Published in Nucleic Acids Res on January 01, 2000
The human genome browser at UCSC. Genome Res (2002) 168.23
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
The generic genome browser: a building block for a model organism system database. Genome Res (2002) 42.64
WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res (2001) 18.52
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res (2002) 6.71
Strategies and tools for whole-genome alignments. Genome Res (2003) 4.86
Finding signals that regulate alternative splicing in the post-genomic era. Genome Biol (2002) 4.73
The UCSC genome browser and associated tools. Brief Bioinform (2012) 3.29
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. PLoS Biol (2007) 3.22
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res (2003) 3.21
Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5. Nucleic Acids Res (2001) 2.89
Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans. Genes Dev (2000) 2.52
Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast. Nucleic Acids Res (2000) 2.35
Regulation of sex-specific differentiation and mating behavior in C. elegans by a new member of the DM domain transcription factor family. Genes Dev (2002) 1.91
Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome. Nucleic Acids Res (2001) 1.85
AsMamDB: an alternative splice database of mammals. Nucleic Acids Res (2001) 1.85
Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol (2004) 1.81
PALS db: Putative Alternative Splicing database. Nucleic Acids Res (2002) 1.68
Intronic alternative splicing regulators identified by comparative genomics in nematodes. PLoS Comput Biol (2006) 1.59
The UCSC Genome Browser. Curr Protoc Bioinformatics (2009) 1.59
Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans. Genetics (2006) 1.48
Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res (2002) 1.44
EASED: Extended Alternatively Spliced EST Database. Nucleic Acids Res (2004) 1.31
The HMG-domain protein BAP111 is important for the function of the BRM chromatin-remodeling complex in vivo. Proc Natl Acad Sci U S A (2001) 1.27
Multiple subunits of the Caenorhabditis elegans anaphase-promoting complex are required for chromosome segregation during meiosis I. Genetics (2002) 1.19
Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing. Nucleic Acids Res (2002) 1.06
SpliceDisease database: linking RNA splicing and disease. Nucleic Acids Res (2011) 1.05
The UCSC Genome Browser. Curr Protoc Hum Genet (2011) 1.04
Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data. BMC Genomics (2007) 0.83
In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans. RNA (2011) 0.80
Alternative Splicing Regulation of Cancer-Related Pathways in Caenorhabditis elegans: An In Vivo Model System with a Powerful Reverse Genetics Toolbox. Int J Cell Biol (2013) 0.76
Comparative evaluation of intron prediction methods and detection of plant genome annotation using intron length distributions. Genomics Inform (2012) 0.75
Caenorhabditis elegans operons contain a higher proportion of genes with multiple transcripts and use 3' splice sites differentially. PLoS One (2010) 0.75
11th Intelligent Systems for Molecular Biology 2003 (ISMB 2003). Comp Funct Genomics (2003) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Genome sequence of the nematode C. elegans: a platform for investigating biology. Science (1998) 61.48
ACeDB and macace. Methods Cell Biol (1995) 10.64
Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation. Annu Rev Genet (1998) 7.15
Finding splice sites within a wilderness of RNA. RNA (1995) 4.35
A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucleic Acids Res (1997) 4.22
Directing alternative splicing: cast and scenarios. Trends Genet (1996) 3.67
ASDB: database of alternatively spliced genes. Nucleic Acids Res (1999) 3.56
Identification of Prp40, a novel essential yeast splicing factor associated with the U1 small nuclear ribonucleoprotein particle. Mol Cell Biol (1996) 2.65
Functional genomics. Proc Natl Acad Sci U S A (1999) 2.29
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res (2000) 10.40
A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J Cell Biol (1991) 4.80
A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol (1995) 3.18
hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J (1999) 3.04
Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing. Proc Natl Acad Sci U S A (1992) 2.66
Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family. J Biol Chem (2001) 2.46
Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. RNA (1998) 1.00
The allele-specific suppressor sup-39 alters use of cryptic splice sites in Caenorhabditis elegans. Genetics (2000) 0.94
Tale of a tail kinase. Nat Struct Biol (2001) 0.75