Published in J Mol Biol on July 14, 2000
Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res (2002) 25.06
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res (2001) 22.33
A probabilistic model of local sequence alignment that simplifies statistical significance estimation. PLoS Comput Biol (2008) 5.12
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches. Nucleic Acids Res (2001) 4.71
The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Res (2001) 3.61
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches. Nucleic Acids Res (2006) 1.81
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria. Genome Biol (2002) 1.72
Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res (2002) 1.44
Protein structure prediction for the male-specific region of the human Y chromosome. Proc Natl Acad Sci U S A (2004) 1.43
The extracellular matrix gene Frem1 is essential for the normal adhesion of the embryonic epidermis. Proc Natl Acad Sci U S A (2004) 1.41
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches. BMC Struct Biol (2007) 1.33
Structural characterization of the human proteome. Genome Res (2002) 1.24
The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment. Nucleic Acids Res (2005) 1.07
The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold. BMC Bioinformatics (2003) 0.97
The membrane mucin Msb2 regulates invasive growth and plant infection in Fusarium oxysporum. Plant Cell (2011) 0.97
ESTIMATING THE GUMBEL SCALE PARAMETER FOR LOCAL ALIGNMENT OF RANDOM SEQUENCES BY IMPORTANCE SAMPLING WITH STOPPING TIMES. Ann Stat (2009) 0.95
ProtRepeatsDB: a database of amino acid repeats in genomes. BMC Bioinformatics (2006) 0.93
Protectome analysis: a new selective bioinformatics tool for bacterial vaccine candidate discovery. Mol Cell Proteomics (2014) 0.88
The proteome: structure, function and evolution. Philos Trans R Soc Lond B Biol Sci (2006) 0.87
Island method for estimating the statistical significance of profile-profile alignment scores. BMC Bioinformatics (2009) 0.87
PSimScan: algorithm and utility for fast protein similarity search. PLoS One (2013) 0.86
Statistical distributions of optimal global alignment scores of random protein sequences. BMC Bioinformatics (2005) 0.85
A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis. Plant Physiol (2015) 0.85
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. BMC Bioinformatics (2009) 0.85
Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power. BMC Bioinformatics (2012) 0.75
Transcriptomic investigation of wound healing and regeneration in the cnidarian Calliactis polypus. Sci Rep (2017) 0.75
Identification and analysis of novel amino-acid sequence repeats in Bacillus anthracis str. Ames proteome using computational tools. Comp Funct Genomics (2007) 0.75