Published in Proc Natl Acad Sci U S A on July 24, 2001
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
SNP discovery via 454 transcriptome sequencing. Plant J (2007) 5.92
Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A (2002) 5.85
Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell (2009) 4.59
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics (2005) 4.19
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet (2009) 3.88
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Single-nucleotide polymorphisms in soybean. Genetics (2003) 3.73
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics (2003) 3.57
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci U S A (2006) 3.23
SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet (2002) 3.23
Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A (2002) 3.20
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS One (2009) 3.17
Recombinational landscape and population genomics of Caenorhabditis elegans. PLoS Genet (2009) 3.14
A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics (2005) 2.97
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc Natl Acad Sci U S A (2003) 2.85
Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics (2003) 2.58
The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics (2007) 2.56
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell (2005) 2.50
Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. Proc Natl Acad Sci U S A (2005) 2.46
Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. Plant Cell (2003) 2.43
Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet (2011) 2.42
Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet (2011) 2.34
Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci U S A (2007) 2.31
Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics (2006) 2.29
Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc Natl Acad Sci U S A (2002) 2.29
Estimating the time since the fixation of a beneficial allele. Genetics (2003) 2.29
Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell (2004) 2.27
Effects of inbreeding on the genetic diversity of populations. Philos Trans R Soc Lond B Biol Sci (2003) 2.26
Nucleotide diversity and linkage disequilibrium in loblolly pine. Proc Natl Acad Sci U S A (2004) 2.23
Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc Natl Acad Sci U S A (2006) 2.20
Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics (2005) 2.13
Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proc Natl Acad Sci U S A (2004) 2.11
Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol (2003) 2.05
The lowdown on linkage disequilibrium. Plant Cell (2003) 1.92
Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]. Genetics (2006) 1.88
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. BMC Genomics (2007) 1.86
Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One (2007) 1.80
Genome-wide association studies for agronomical traits in a world wide spring barley collection. BMC Plant Biol (2012) 1.79
Molecular markers from the transcribed/expressed region of the genome in higher plants. Funct Integr Genomics (2004) 1.75
An integrated high-density linkage map of soybean with RFLP, SSR, STS, and AFLP markers using A single F2 population. DNA Res (2008) 1.73
Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics (2007) 1.71
High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei. Genetics (2006) 1.66
Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics (2005) 1.64
Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.]. Genetics (2004) 1.63
Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res (2006) 1.62
Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Plant Physiol (2005) 1.61
Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiol (2006) 1.61
Patterns of diversity and recombination along chromosome 1 of maize (Zea mays ssp. mays L.). Genetics (2002) 1.60
Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor. Genetics (2004) 1.58
Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. Proc Natl Acad Sci U S A (2009) 1.55
High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L. BMC Genomics (2013) 1.51
Historical divergence and gene flow in the genus Zea. Genetics (2009) 1.43
Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir. Genetics (2005) 1.41
Application of association mapping to understanding the genetic diversity of plant germplasm resources. Int J Plant Genomics (2008) 1.40
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize. Plant Cell (2007) 1.39
Reduced variation on the chicken Z chromosome. Genetics (2004) 1.39
Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers. Genetics (2006) 1.36
An analysis of genetic diversity across the maize genome using microsatellites. Genetics (2005) 1.35
The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics (2005) 1.33
Marker density and read depth for genotyping populations using genotyping-by-sequencing. Genetics (2013) 1.32
Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor. Genetics (2005) 1.30
Short read alignment with populations of genomes. Bioinformatics (2013) 1.30
Sequence polymorphism in polyploid wheat and their d-genome diploid ancestor. Genetics (2004) 1.30
Extent and structure of linkage disequilibrium in canola quality winter rapeseed (Brassica napus L.). Theor Appl Genet (2009) 1.30
EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Funct Integr Genomics (2007) 1.23
Comparative cross-species alternative splicing in plants. Plant Physiol (2007) 1.21
Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice. Plant Methods (2008) 1.20
High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics (2009) 1.19
Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics (2008) 1.19
Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis). Genetics (2002) 1.16
Recombination rate variation in closely related species. Heredity (Edinb) (2011) 1.16
National Science Foundation-sponsored workshop report. Draft plan for soybean genomics. Plant Physiol (2004) 1.15
Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics (2007) 1.14
Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica (2008) 1.13
Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize. PLoS One (2011) 1.13
The influence of linkage and inbreeding on patterns of nucleotide sequence diversity at duplicate alcohol dehydrogenase loci in wild barley (Hordeum vulgare ssp. spontaneum). Genetics (2002) 1.12
Molecular population genetics of the Arabidopsis CLAVATA2 region. The genomic scale of variation and selection in a selfing species. Genetics (2003) 1.12
Gene-based sequence diversity analysis of field pea (Pisum). Genetics (2007) 1.10
Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity. Genetics (2006) 1.10
Entering the second century of maize quantitative genetics. Heredity (Edinb) (2013) 1.09
Genomic screening for artificial selection during domestication and improvement in maize. Ann Bot (2007) 1.09
Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight. BMC Plant Biol (2010) 1.07
Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes in Lolium perenne. BMC Plant Biol (2007) 1.07
Identification of single nucleotide polymorphisms and analysis of linkage disequilibrium in sunflower elite inbred lines using the candidate gene approach. BMC Plant Biol (2008) 1.06
Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics (2008) 1.05
Tagging the signatures of domestication in common bean (Phaseolus vulgaris) by means of pooled DNA samples. Ann Bot (2007) 1.04
Editor's choice: Crop genome plasticity and its relevance to food and feed safety of genetically engineered breeding stacks. Plant Physiol (2012) 1.04
Genetic basis and detection of unintended effects in genetically modified crop plants. Transgenic Res (2015) 1.04
Population genetics of foxtail millet and its wild ancestor. BMC Genet (2010) 1.02
Epistatic interactions between Opaque2 transcriptional activator and its target gene CyPPDK1 control kernel trait variation in maize. Plant Physiol (2009) 1.02
A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.). BMC Plant Biol (2010) 1.02
Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels. Theor Appl Genet (2011) 1.02
Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L. PLoS Genet (2013) 1.01
DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol (2007) 0.99
Flexible and scalable genotyping-by-sequencing strategies for population studies. BMC Genomics (2014) 0.98
Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiol (2007) 0.97
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
The future of genetic studies of complex human diseases. Science (1996) 64.76
Evolutionary relationship of DNA sequences in finite populations. Genetics (1983) 40.67
The hitch-hiking effect of a favourable gene. Genet Res (1974) 34.74
Adaptive protein evolution at the Adh locus in Drosophila. Nature (1991) 31.65
Properties of a neutral allele model with intragenic recombination. Theor Popul Biol (1983) 28.09
A test of neutral molecular evolution based on nucleotide data. Genetics (1987) 24.44
Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat Genet (1999) 24.24
Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics (1985) 20.92
The effect of deleterious mutations on neutral molecular variation. Genetics (1993) 20.07
Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis. Nat Genet (1999) 17.09
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature (1992) 15.49
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics (1999) 14.86
Linkage disequilibrium in finite populations. Theor Appl Genet (1968) 12.55
The evolution of apical dominance in maize. Nature (1997) 9.37
The limits of selection during maize domestication. Nature (1999) 8.14
Properties of statistical tests of neutrality for DNA polymorphism data. Genetics (1995) 7.62
Estimating the recombination parameter of a finite population model without selection. Genet Res (1987) 7.37
Intraspecific nuclear DNA variation in Drosophila. Mol Biol Evol (1996) 6.29
Deleterious background selection with recombination. Genetics (1995) 4.45
Adjusting the focus on human variation. Trends Genet (2000) 4.44
Genetics of dominant gibberellin-insensitive dwarfism in maize. Genetics (1989) 3.16
Two sites in the Delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster. Genetics (1998) 3.05
DNA variability and recombination rates at X-linked loci in humans. Genetics (1998) 3.01
From teosinte to maize: the catastrophic sexual transmutation. Science (1983) 3.00
A scan for linkage disequilibrium across the human genome. Genetics (1999) 2.79
Nonuniform recombination within the human beta-globin gene cluster. Am J Hum Genet (1986) 2.78
The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome. Proc Natl Acad Sci U S A (1994) 2.63
Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. Genetics (1996) 2.59
Optimal sequencing strategies for surveying molecular genetic diversity. Genetics (1996) 2.47
Patterns of genetic variation in Mendelian and complex traits. Annu Rev Genomics Hum Genet (2000) 2.37
Meiotic drive of chromosomal knobs reshaped the maize genome. Genetics (1999) 2.36
DNA polymorphism in lycopersicon and crossing-over per physical length. Genetics (1998) 2.34
A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map. Genetics (1999) 2.33
Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing aegilops species. Genetics (1998) 2.29
Molecular evolution of the Adh1 locus in the genus Zea. Proc Natl Acad Sci U S A (1993) 2.26
The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics (1999) 1.97
Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene. Genetics (1998) 1.97
Genetic and germ plasm stocks worth conserving. J Hered (1990) 1.41
Characterization of a meiotic crossover in maize identified by a restriction fragment length polymorphism-based method. Genetics (1996) 1.28
Relationships among maize inbred lines and populations from European and North-American origins as estimated using RFLP markers. Theor Appl Genet (1999) 0.89
A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. Bioinformatics (2001) 16.47
Gene duplication and evolution. Science (2001) 11.26
The paleontology of intergene retrotransposons of maize. Nat Genet (1998) 8.55
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol (1994) 7.55
DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci U S A (1997) 7.08
Convergent domestication of cereal crops by independent mutations at corresponding genetic Loci. Science (1995) 5.52
Investigation of the bottleneck leading to the domestication of maize. Proc Natl Acad Sci U S A (1998) 4.29
Evolution of genes and taxa: a primer. Plant Mol Biol (2000) 3.46
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J Biol Chem (2000) 3.32
Naturally occurring variation in bristle number and DNA polymorphisms at the scabrous locus of Drosophila melanogaster. Science (1994) 3.05
Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell (1998) 2.83
Genetic architecture of thermal adaptation in Escherichia coli. Proc Natl Acad Sci U S A (2001) 2.61
Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. Genetics (1996) 2.59
Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell (1998) 2.43
Meiotic drive of chromosomal knobs reshaped the maize genome. Genetics (1999) 2.36
Single-strand conformation polymorphism analysis coupled with stratified DNA sequencing reveals reduced sequence variation in the su(s) and su(wa) regions of the Drosophila melanogaster X chromosome. Proc Natl Acad Sci U S A (1994) 2.31
Maize as a model for the evolution of plant nuclear genomes. Proc Natl Acad Sci U S A (2000) 2.29
Rates and patterns of chloroplast DNA evolution. Proc Natl Acad Sci U S A (1994) 2.06
The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics (1999) 1.97
Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene. Genetics (1998) 1.97
Zea diploperennis (Gramineae): A New Teosinte from Mexico. Science (1979) 1.67
Correlated rates of synonymous site evolution across plant genomes. Mol Biol Evol (1997) 1.57
Hypoxia enhances phosphorylation of eukaryotic initiation factor 4A in maize root tips. J Biol Chem (1991) 1.47
Genetic analysis of complex diseases. Science (1997) 1.38
Evolution of alcohol dehydrogenase genes in the palm and grass families. Proc Natl Acad Sci U S A (1996) 1.34
Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test. Genetics (1997) 1.30
Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet (2010) 1.19
Sequence diversity in the tetraploid Zea perennis and the closely related diploid Z. diploperennis: insights from four nuclear loci. Genetics (2001) 1.10
The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli. J Mol Evol (2001) 1.07
Molecular evolution of the wound-induced serine protease inhibitor wip1 in Zea and related genera. Mol Biol Evol (2001) 1.04
Statistical detection of chromosomal homology using shared-gene density alone. Bioinformatics (2004) 1.04
Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission. Mol Biol Evol (1998) 1.04
Neutral and nonneutral mitochondrial genetic variation in deep-sea clams from the family vesicomyidae. J Mol Evol (2000) 0.95
A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. J Mol Evol (2001) 0.92
Geographic variation in Drosophila: From molecules to morphology and back. Trends Ecol Evol (1992) 0.83
Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time. Theor Appl Genet (2012) 0.79
The influence of pH on the buccal absorption and plasma and renal elimination of acebutolol. Br J Clin Pharmacol (1976) 0.79