Interaction of translation initiation factor 3 with the 30S ribosomal subunit.

PubWeight™: 2.34‹?› | Rank: Top 2%

🔗 View Article (PMID 11684020)

Published in Mol Cell on October 01, 2001

Authors

A Dallas1, H F Noller

Author Affiliations

1: Center for Molecular Biology of RNA, Sinsheimer Laboratories, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.

Articles citing this

The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev (2002) 4.96

Initiation of protein synthesis in bacteria. Microbiol Mol Biol Rev (2005) 3.78

Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. Genes Dev (2004) 2.88

Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. Genes Dev (2003) 2.77

Recycling of eukaryotic posttermination ribosomal complexes. Cell (2007) 2.57

Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol Mol Biol Rev (2011) 2.51

The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH. EMBO J (2005) 1.96

How initiation factors tune the rate of initiation of protein synthesis in bacteria. EMBO J (2006) 1.67

Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing. Nucleic Acids Res (2009) 1.61

GTP hydrolysis by IF2 guides progression of the ribosome into elongation. Mol Cell (2009) 1.59

The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity. RNA (2006) 1.53

Activities of Ligatin and MCT-1/DENR in eukaryotic translation initiation and ribosomal recycling. Genes Dev (2010) 1.52

Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy. Structure (2016) 1.42

The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli. PLoS Biol (2011) 1.35

IRES-induced conformational changes in the ribosome and the mechanism of translation initiation by internal ribosomal entry. Biochim Biophys Acta (2009) 1.34

Position of eukaryotic initiation factor eIF5B on the 80S ribosome mapped by directed hydroxyl radical probing. EMBO J (2007) 1.31

Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation. J Mol Biol (2005) 1.31

The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits. RNA (2005) 1.29

Mechanism of protein biosynthesis in mammalian mitochondria. Biochim Biophys Acta (2011) 1.26

Functional elements in initiation factors 1, 1A, and 2β discriminate against poor AUG context and non-AUG start codons. Mol Cell Biol (2011) 1.22

The translational fidelity function of IF3 during transition from the 30 S initiation complex to the 70 S initiation complex. J Mol Biol (2007) 1.19

Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli. EMBO J (2008) 1.17

Complementary roles of initiation factor 1 and ribosome recycling factor in 70S ribosome splitting. EMBO J (2008) 1.17

Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation. RNA (2007) 1.14

Interaction of SmpB with ribosome from directed hydroxyl radical probing. Nucleic Acids Res (2007) 1.13

Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis. BMC Mol Biol (2005) 1.10

Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA. Mol Microbiol (2009) 1.10

Definition of bases in 23S rRNA essential for ribosomal subunit association. RNA (2004) 1.10

A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res (2008) 1.08

Analysis of structural dynamics in the ribosome by TLS crystallographic refinement. J Mol Biol (2007) 1.06

Yeast initiator tRNA identity elements cooperate to influence multiple steps of translation initiation. RNA (2006) 1.06

Ribosomal localization of translation initiation factor IF2. RNA (2003) 1.05

Evidence for an active role of IF3mt in the initiation of translation in mammalian mitochondria. Biochemistry (2009) 1.03

Multiple defects in translation associated with altered ribosomal protein L4. Nucleic Acids Res (2004) 1.03

The interaction of mammalian mitochondrial translational initiation factor 3 with ribosomes: evolution of terminal extensions in IF3mt. Nucleic Acids Res (2007) 0.96

Crucial contribution of the multiple copies of the initiator tRNA genes in the fidelity of tRNA(fMet) selection on the ribosomal P-site in Escherichia coli. Nucleic Acids Res (2010) 0.96

Conformational selection of translation initiation factor 3 signals proper substrate selection. Nat Struct Mol Biol (2013) 0.95

Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor. RNA (2011) 0.95

In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proc Natl Acad Sci U S A (2015) 0.95

Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs. Mol Genet Genomics (2009) 0.94

Mutations in conserved helix 69 of 23S rRNA of Thermus thermophilus that affect capreomycin resistance but not posttranscriptional modifications. J Bacteriol (2008) 0.93

Inhibition of antiassociation activity of translation initiation factor 3 by paromomycin. Antimicrob Agents Chemother (2006) 0.92

Role of the N- and C-terminal extensions on the activity of mammalian mitochondrial translational initiation factor 3. Nucleic Acids Res (2005) 0.92

Eukaryotic initiator tRNA: finely tuned and ready for action. FEBS Lett (2010) 0.92

Why is start codon selection so precise in eukaryotes? Translation (Austin) (2014) 0.92

Initiation of mRNA translation in bacteria: structural and dynamic aspects. Cell Mol Life Sci (2015) 0.92

Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. J Mol Biol (2007) 0.90

Role of helix 44 of 16S rRNA in the fidelity of translation initiation. RNA (2012) 0.89

The aminoglycoside resistance methyltransferases from the ArmA/Rmt family operate late in the 30S ribosomal biogenesis pathway. RNA (2010) 0.88

Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining. J Mol Biol (2014) 0.88

Comprehensive analysis of phosphorylated proteins of Escherichia coli ribosomes. J Proteome Res (2009) 0.88

The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc Natl Acad Sci U S A (2011) 0.87

Translation initiation complex formation in the crenarchaeon Sulfolobus solfataricus. RNA (2009) 0.87

70S-scanning initiation is a novel and frequent initiation mode of ribosomal translation in bacteria. Proc Natl Acad Sci U S A (2016) 0.86

Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1. Proc Natl Acad Sci U S A (2011) 0.86

Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation. Mol Microbiol (2013) 0.85

Interaction between the ribosomal subunits: 16S rRNA suppressors of the lethal DeltaA1916 mutation in the 23S rRNA of Escherichia coli. Mol Genet Genomics (2007) 0.84

Roles of the N- and C-terminal domains of mammalian mitochondrial initiation factor 3 in protein biosynthesis. J Mol Biol (2008) 0.84

Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit. Biochim Biophys Acta (2011) 0.82

Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proc Natl Acad Sci U S A (2016) 0.80

Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell (2016) 0.79

Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3. Mol Microbiol (2008) 0.79

A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity. RNA Biol (2015) 0.79

Directional transition from initiation to elongation in bacterial translation. Nucleic Acids Res (2015) 0.78

Is the cellular initiation of translation an exclusive property of the initiator tRNAs? RNA Biol (2015) 0.78

Roles of helix H69 of 23S rRNA in translation initiation. Proc Natl Acad Sci U S A (2015) 0.78

The emerging role of rectified thermal fluctuations in initiator aa-tRNA- and start codon selection during translation initiation. Biochimie (2015) 0.77

Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b. BMC Genomics (2016) 0.77

Intersubunit Bridges of the Bacterial Ribosome. J Mol Biol (2016) 0.77

Detecting protein-protein interactions in the intact cell of Bacillus subtilis (ATCC 6633). J Bacteriol (2003) 0.76

tRNA/mRNA Mimicry by tmRNA and SmpB in Trans-Translation. J Nucleic Acids (2011) 0.76

A Possible Role of the Full-Length Nascent Protein in Post-Translational Ribosome Recycling. PLoS One (2017) 0.75

Conformational Response of 30S-bound IF3 to A-Site Binders Streptomycin and Kanamycin. Antibiotics (Basel) (2016) 0.75

A Mutation in the 16S rRNA Decoding Region Attenuates the Virulence of Mycobacterium tuberculosis. Infect Immun (2016) 0.75

Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways. Nucleic Acids Res (2016) 0.75

Initiation factor 2 stabilizes the ribosome in a semirotated conformation. Proc Natl Acad Sci U S A (2015) 0.75

Articles by these authors

(truncated to the top 100)

Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A (1978) 32.65

Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol (1981) 29.04

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiol Rev (1983) 23.08

Crystal structure of the ribosome at 5.5 A resolution. Science (2001) 18.21

Comparative anatomy of 16-S-like ribosomal RNA. Prog Nucleic Acid Res Mol Biol (1985) 16.21

X-ray crystal structures of 70S ribosome functional complexes. Science (1999) 10.51

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res (1980) 9.50

Structure of ribosomal RNA. Annu Rev Biochem (1984) 9.44

Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli. Plasmid (1981) 9.00

Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature (1987) 8.96

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J Mol Biol (1986) 7.87

Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A (1980) 7.80

Intermediate states in the movement of transfer RNA in the ribosome. Nature (1989) 7.30

Secondary structure model for 23S ribosomal RNA. Nucleic Acids Res (1981) 7.12

Secondary structure of 16S ribosomal RNA. Science (1981) 6.52

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol (1988) 6.38

Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites. Cell (1989) 5.79

Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes. J Mol Biol (1977) 5.66

The path of messenger RNA through the ribosome. Cell (2001) 5.65

Mechanism of ribosomal subunit association: discrimination of specific sites in 16 S RNA essential for association activity. J Mol Biol (1979) 4.88

rII cistrons of bacteriophage T4. DNA sequence around the intercistronic divide and positions of genetic landmarks. J Mol Biol (1981) 4.76

Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell (1986) 4.65

A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome. Nature (1995) 4.59

Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA. Nature (1988) 4.53

Chloramphenicol, erythromycin, carbomycin and vernamycin B protect overlapping sites in the peptidyl transferase region of 23S ribosomal RNA. Biochimie (1987) 4.47

The nucleotide sequence of a rat 18 S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18 S ribosomal ribonucleic acid. J Biol Chem (1984) 4.00

Ribosomes and translation. Annu Rev Biochem (1997) 3.87

A functional pseudoknot in 16S ribosomal RNA. EMBO J (1991) 3.59

Identification of an RNA-protein bridge spanning the ribosomal subunit interface. Science (1999) 3.31

Model for the three-dimensional folding of 16 S ribosomal RNA. J Mol Biol (1988) 3.24

A "bulged" double helix in a RNA-protein contact site. Proc Natl Acad Sci U S A (1981) 3.16

RNA-protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA. Science (1989) 2.97

Higher order structure in ribosomal RNA. EMBO J (1986) 2.97

Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J Mol Biol (1990) 2.90

Functional modification of 16S ribosomal RNA by kethoxal. Proc Natl Acad Sci U S A (1972) 2.74

Topography of 16S RNA in 30S ribosomal subunits. Nucleotide sequences and location of sites of reaction with kethoxal. Biochemistry (1974) 2.67

Mutations in 16S ribosomal RNA disrupt antibiotic--RNA interactions. EMBO J (1989) 2.54

Altered topography of 16S RNA in the inactive form of Escherichia coli 30S ribosomal subunits. Biochemistry (1978) 2.44

Amino-acid sequence of glyceraldehyde 3-phosphate dehydrogenase from lobster muscle. Nature (1967) 2.40

Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA. Proc Natl Acad Sci U S A (1991) 2.34

The structure of the RNA binding site of ribosomal proteins S8 and S15. J Biol Chem (1979) 2.24

Identification of a site on 23S ribosomal RNA located at the peptidyl transferase center. Proc Natl Acad Sci U S A (1984) 2.22

Nucleotide sequence of the 3' terminus of E. coli 16S ribosomal RNA. Mol Biol Rep (1974) 2.13

A fragment of 23S RNA containing a nucleotide sequence complementary to a region of 5S RNA. FEBS Lett (1975) 2.07

Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit. Proc Natl Acad Sci U S A (2001) 2.06

Aminoacyl esterase activity of the Tetrahymena ribozyme. Science (1992) 2.06

Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing. Cell (1998) 2.06

Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits. J Mol Biol (1993) 2.02

A cold-sensitive mutation in 16S rRNA provides evidence for helical switching in ribosome assembly. Genes Dev (1993) 2.00

Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA. RNA (1995) 1.98

Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA. J Mol Biol (1986) 1.97

Interaction of antibiotics with A- and P-site-specific bases in 16S ribosomal RNA. EMBO J (1991) 1.96

Mutations in ribosomal proteins S4 and S12 influence the higher order structure of 16 S ribosomal RNA. J Mol Biol (1989) 1.94

Dominant lethal mutations in a conserved loop in 16S rRNA. Proc Natl Acad Sci U S A (1990) 1.91

Footprinting the sites of interaction of antibiotics with catalytic group I intron RNA. Science (1993) 1.90

In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function. RNA (1996) 1.85

Footprinting mRNA-ribosome complexes with chemical probes. EMBO J (1994) 1.84

Localization of the binding site for protein S4 on 16 S ribosomal RNA by chemical and enzymatic probing and primer extension. J Mol Biol (1986) 1.83

Isolation of temperature-sensitive mutants of 16 S rRNA in Escherichia coli. J Mol Biol (1989) 1.82

Protection of specific sites in 23 S and 5 S RNA from chemical modification by association of 30 S and 50 S ribosomes. J Mol Biol (1979) 1.82

Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA. EMBO J (1994) 1.76

Specific protection of 16 S rRNA by translational initiation factors. J Mol Biol (1995) 1.76

Molecular basis of tetracycline action: identification of analogs whose primary target is not the bacterial ribosome. Antimicrob Agents Chemother (1991) 1.69

EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome. EMBO J (1998) 1.68

Structure of 5 S ribosomal RNA from Escherichia coli: identification of kethoxal-reactive sites in the A and B conformations. J Mol Biol (1979) 1.66

Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA. Genes Dev (1995) 1.66

Interaction of ribosomal proteins S5, S6, S11, S12, S18 and S21 with 16 S rRNA. J Mol Biol (1988) 1.63

Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. RNA (1999) 1.60

Defining the structural requirements for a helix in 23 S ribosomal RNA that confers erythromycin resistance. J Mol Biol (1989) 1.57

Molecular movement inside the translational engine. Cell (1998) 1.53

Alteration of polynucleotide secondary structure by ribosomal protein S1. Proc Natl Acad Sci U S A (1976) 1.49

Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA. Biochemistry (1999) 1.47

Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site. Science (1995) 1.46

Structures of complexes of 5S RNA with ribosomal proteins L5, L18 and L25 from Escherichia coli: identification of kethoxal-reactive sites on the 5S RNA. J Mol Biol (1979) 1.45

Independent in vitro assembly of a ribonucleoprotein particle containing the 3' domain of 16S rRNA. Proc Natl Acad Sci U S A (1994) 1.43

Mutations at nucleotides G2251 and U2585 of 23 S rRNA perturb the peptidyl transferase center of the ribosome. J Mol Biol (1997) 1.34

Hydroxyl radical cleavage of tRNA in the ribosomal P site. Proc Natl Acad Sci U S A (1992) 1.34

Protection of ribosomal RNA from kethoxal in polyribosomes. Implication of specific sites in ribosome function. J Mol Biol (1983) 1.33

Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits. J Mol Biol (1999) 1.32

Mapping the inside of the ribosome with an RNA helical ruler. Science (1997) 1.31

Interaction of proteins S16, S17 and S20 with 16 S ribosomal RNA. J Mol Biol (1988) 1.29

In vitro reconstitution of 30S ribosomal subunits using complete set of recombinant proteins. Methods Enzymol (2000) 1.29

Probing the conformation of 18S rRNA in yeast 40S ribosomal subunits with kethoxal. Biochemistry (1984) 1.28

Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA. Science (1998) 1.27

Directed hydroxyl radical probing of 16S rRNA using Fe(II) tethered to ribosomal protein S4. Proc Natl Acad Sci U S A (1995) 1.27

Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol (2000) 1.26

Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA. J Mol Biol (1988) 1.26

Complete nucleotide sequence of a 23S ribosomal RNA gene from Bacillus stearothermophilus. DNA (1984) 1.25

Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA. Nucleic Acids Res (1982) 1.24

Identification of a ribosomal protein essential for peptidyl transferase activity. Proc Natl Acad Sci U S A (1975) 1.24

Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12. J Mol Biol (1994) 1.24

Mapping the rRNA neighborhood of the acceptor end of tRNA in the ribosome. EMBO J (1996) 1.22

Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits. J Mol Biol (1999) 1.21

Isolation and restriction mapping of plasmids containing ribosomal DNA sequences from the rrn B cistron of E. coli. Mol Gen Genet (1979) 1.20

Probing the assembly of the 3' major domain of 16 S ribosomal RNA. Quaternary interactions involving ribosomal proteins S7, S9 and S19. J Mol Biol (1988) 1.19

Nucleotide sequences of accessible regions of 23S RNA in 50S ribosomal subunits. Biochemistry (1978) 1.18

Characterization of functionally active subribosomal particles from Thermus aquaticus. Proc Natl Acad Sci U S A (1999) 1.15

Evidence for functional interaction between domains II and V of 23S ribosomal RNA from an erythromycin-resistant mutant. Proc Natl Acad Sci U S A (1985) 1.13

Evidence for functional interaction between elongation factor Tu and 16S ribosomal RNA. Proc Natl Acad Sci U S A (1993) 1.13

Identification of 2'-hydroxyl groups required for interaction of a tRNA anticodon stem-loop region with the ribosome. RNA (1997) 1.11