PubRank

Xiuqing Zhang

Author PubWeight™ 319.15‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The diploid genome sequence of an Asian individual. Nature 2008 46.29
2 A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010 43.63
3 A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 2002 42.78
4 International network of cancer genome projects. Nature 2010 20.35
5 The sequence and de novo assembly of the giant panda genome. Nature 2009 15.76
6 Sequencing of 50 human exomes reveals adaptation to high altitude. Science 2010 11.27
7 The genome of the cucumber, Cucumis sativus L. Nat Genet 2009 8.19
8 Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 2010 7.51
9 Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol 2010 6.07
10 Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat Genet 2011 5.73
11 Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 2012 5.62
12 Building the sequence map of the human pan-genome. Nat Biotechnol 2009 5.53
13 Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet 2010 5.44
14 Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 2012 5.16
15 Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol 2011 4.84
16 Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study. BMJ 2011 4.50
17 The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol 2010 4.25
18 Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 2010 4.06
19 Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation. Nat Genet 2013 3.87
20 Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma. Nat Genet 2011 3.66
21 Clinical application of massively parallel sequencing-based prenatal noninvasive fetal trisomy test for trisomies 21 and 18 in 11,105 pregnancies with mixed risk factors. Prenat Diagn 2012 3.54
22 Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 2010 3.34
23 Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science 2009 2.68
24 Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly. Nat Biotechnol 2011 2.45
25 Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat Biotechnol 2011 2.37
26 Noninvasive prenatal diagnosis of fetal trisomy 18 and trisomy 13 by maternal plasma DNA sequencing. PLoS One 2011 2.29
27 Whole genome DNA methylation analysis based on high throughput sequencing technology. Methods 2010 2.17
28 Comprehensive comparison of three commercial human whole-exome capture platforms. Genome Biol 2011 2.15
29 Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol 2010 2.03
30 A comparison of rice chloroplast genomes. Plant Physiol 2004 1.85
31 Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinoma. PLoS One 2010 1.82
32 A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res 2005 1.71
33 DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation. J Bacteriol 2004 1.52
34 High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization. Am J Hum Genet 2005 1.51
35 Noninvasive Fetal Trisomy (NIFTY) test: an advanced noninvasive prenatal diagnosis methodology for fetal autosomal and sex chromosomal aneuploidies. BMC Med Genomics 2012 1.45
36 Noninvasive prenatal diagnosis of common fetal chromosomal aneuploidies by maternal plasma DNA sequencing. J Matern Fetal Neonatal Med 2012 1.38
37 Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias. Cancer Res 2009 1.35
38 Microarray analysis of temperature-induced transcriptome of Yersinia pestis. Microbiol Immunol 2004 1.28
39 An atlas of DNA methylomes in porcine adipose and muscle tissues. Nat Commun 2012 1.28
40 The YH database: the first Asian diploid genome database. Nucleic Acids Res 2009 1.22
41 A method for noninvasive detection of fetal large deletions/duplications by low coverage massively parallel sequencing. Prenat Diagn 2013 1.22
42 Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing. BMC Genomics 2013 1.18
43 Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. Gigascience 2012 1.18
44 The etiology of multiple sclerosis: genetic evidence for the involvement of the human endogenous retrovirus HERV-Fc1. PLoS One 2011 1.17
45 Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis. Genome Biol 2012 1.16
46 A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing. PLoS One 2013 1.15
47 Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events. PLoS One 2011 1.15
48 Prenatal detection of aneuploidy and imbalanced chromosomal arrangements by massively parallel sequencing. PLoS One 2012 1.06
49 A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China. Genomics Proteomics Bioinformatics 2003 1.06
50 Systematic assessment of reduced representation bisulfite sequencing to human blood samples: A promising method for large-sample-scale epigenomic studies. J Biotechnol 2011 1.05
51 HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics 2013 1.02
52 Detecting novel low-abundant transcripts in Drosophila. RNA 2005 1.02
53 Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome. Genomics Proteomics Bioinformatics 2003 0.95
54 Polymorphisms of DNA repair genes: ADPRT, XRCC1, and XPD and cancer risk in genetic epidemiology. Methods Mol Biol 2009 0.95
55 Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics 2008 0.95
56 An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines. BMC Genomics 2009 0.95
57 High resolution profiling of human exon methylation by liquid hybridization capture-based bisulfite sequencing. BMC Genomics 2011 0.94
58 Linkage disequilibrium mapping of a breast cancer susceptibility locus near RAI/PPP1R13L/iASPP. BMC Med Genet 2008 0.92
59 A systematic analysis on DNA methylation and the expression of both mRNA and microRNA in bladder cancer. PLoS One 2011 0.91
60 Rapid detection of aneuploidies on a benchtop sequencing platform. Prenat Diagn 2013 0.87
61 Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell carcinoma. Int J Cancer 2013 0.86
62 High-performance single-chip exon capture allows accurate whole exome sequencing using the Illumina Genome Analyzer. Sci China Life Sci 2011 0.86
63 Deep sequencing reveals small RNA characterization of invasive micropapillary carcinomas of the breast. Breast Cancer Res Treat 2012 0.85
64 Rare inborn errors associated with chronic hepatitis B virus infection. Hepatology 2012 0.84
65 A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies. Hum Mutat 2013 0.84
66 Comprehensive evaluation of SNP identification with the Restriction Enzyme-based Reduced Representation Library (RRL) method. BMC Genomics 2012 0.82
67 3D genome tuner: compare multiple circular genomes in a 3D context. Genomics Proteomics Bioinformatics 2009 0.82
68 Paired-end sequencing of long-range DNA fragments for de novo assembly of large, complex Mammalian genomes by direct intra-molecule ligation. PLoS One 2012 0.82
69 High hydrostatic pressure treatment of porcine oocytes before handmade cloning improves developmental competence and cryosurvival. Cloning Stem Cells 2008 0.81
70 Depletion of GRIM-19 accelerates hepatocellular carcinoma invasion via inducing EMT and loss of contact inhibition. J Cell Physiol 2012 0.80
71 DNA copy number aberrations in breast cancer by array comparative genomic hybridization. Genomics Proteomics Bioinformatics 2009 0.80
72 Non-invasive fetal sex determination by maternal plasma sequencing and application in X-linked disorder counseling. J Matern Fetal Neonatal Med 2014 0.80
73 HLA-A gene polymorphism defined by high-resolution sequence-based typing in 161 Northern Chinese Han people. Genomics Proteomics Bioinformatics 2003 0.80
74 Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma. Genome Biol 2014 0.80
75 Gene expression profiling in rice young panicle and vegetative organs and identification of panicle-specific genes through known gene functions. Mol Genet Genomics 2005 0.80
76 Identification of somatic alterations in stage I lung adenocarcinomas by next-generation sequencing. Genes Chromosomes Cancer 2014 0.79
77 A novel approach for identifying the heme-binding proteins from mouse tissues. Genomics Proteomics Bioinformatics 2003 0.79
78 A novel strategy of natural plant ferritin to protect DNA from oxidative damage during iron oxidation. Free Radic Biol Med 2012 0.79
79 Piglets born from vitrified cloned blastocysts produced with a simplified method of delipation and nuclear transfer. Cloning Stem Cells 2007 0.78
80 The DNA sequence, annotation and analysis of human chromosome 3. Nature 2006 0.78
81 Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls. PLoS One 2011 0.78
82 Osmotic stress induced by sodium chloride, sucrose or trehalose improves cryotolerance and developmental competence of porcine oocytes. Reprod Fertil Dev 2009 0.78
83 The novel antimicrobial peptides from skin of Chinese broad-folded frog, Hylarana latouchii (Anura:Ranidae). Peptides 2008 0.76
84 Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions. Sci China C Life Sci 2009 0.75
85 Aseptic minimum volume vitrification technique for porcine parthenogenetically activated blastocyst. Cryo Letters 2011 0.75
86 [Correlations between atopy and airway hyperresponsiveness]. Wei Sheng Yan Jiu 2002 0.75
87 Flow-through pretreatment with strongly acidic electrolyzed water for hemicellulose removal and enzymatic hydrolysis of corn stover. Bioresour Technol 2012 0.75
88 Identification of prostate cancer hub genes and therapeutic agents using bioinformatics approach. Cancer Biomark 2017 0.75
89 Mesoscopic simulation studies on micellar phases of Pluronic P103 solution. J Mol Model 2008 0.75
90 Replication study of RAD54B and GREB1 polymorphisms and risk of PCOS in Han Chinese. Reprod Biomed Online 2013 0.75
91 DNA methylation in peripheral blood cells of pigs cloned by somatic cell nuclear transfer. Cell Reprogram 2011 0.75
92 High hydrostatic pressure treatment of porcine oocytes induces parthenogenetic activation. Cell Reprogram 2010 0.75
93 Elevated NaCl concentration improves cryotolerance and developmental competence of porcine oocytes. Reprod Biomed Online 2009 0.75