In vivo topography of Rap1p-DNA complex at Saccharomyces cerevisiae TEF2 UAS(RPG) during transcriptional regulation.

PubWeight™: 0.95‹?› | Rank: Top 15%

🔗 View Article (PMID 12051841)

Published in J Mol Biol on April 26, 2002

Authors

Veronica De Sanctis1, Sabrina La Terra, Alessandro Bianchi, David Shore, Luciano Burderi, Ernesto Di Mauro, Rodolfo Negri

Author Affiliations

1: Fondazione "Istituto Pasteur-Fondazione Cenci-Bolognetti", c/o Dipartimento di Genetica e Biologia Molecolare, Università di Roma, La Sapienza, Rome, Italy.

Articles by these authors

Formamide and the origin of life. Phys Life Rev (2011) 5.56

Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. Nature (2004) 2.51

Cell cycle progression and de novo centriole assembly after centrosomal removal in untransformed human cells. J Cell Biol (2007) 2.15

Growth control and ribosome biogenesis. Curr Opin Cell Biol (2009) 2.11

How telomerase reaches its end: mechanism of telomerase regulation by the telomeric complex. Mol Cell (2008) 1.97

Delivery of yeast telomerase to a DNA break depends on the recruitment functions of Cdc13 and Est1. Mol Cell (2004) 1.96

Anticheckpoint pathways at telomeres in yeast. Nat Struct Mol Biol (2012) 1.81

Pol12, the B subunit of DNA polymerase alpha, functions in both telomere capping and length regulation. Genes Dev (2004) 1.67

The centromere geometry essential for keeping mitosis error free is controlled by spindle forces. Nature (2007) 1.64

Increased association of telomerase with short telomeres in yeast. Genes Dev (2007) 1.62

Fine-structure analysis of ribosomal protein gene transcription. Mol Cell Biol (2006) 1.61

Distinct roles for yeast Stn1 in telomere capping and telomerase inhibition. EMBO J (2008) 1.56

Telomere length regulation: coupling DNA end processing to feedback regulation of telomerase. EMBO J (2009) 1.49

Role of histone acetylation in the control of gene expression. Biochem Cell Biol (2005) 1.46

DNA breaks are masked by multiple Rap1 binding in yeast: implications for telomere capping and telomerase regulation. Genes Dev (2007) 1.45

Key signalling nodes in mammary gland development and cancer. Mitogen-activated protein kinase signalling in experimental models of breast cancer progression and in mammary gland development. Breast Cancer Res (2009) 1.40

Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing. Genes Dev (2005) 1.34

Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling. Mol Cell (2009) 1.30

Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila. PLoS Genet (2009) 1.30

Guanine, adenine, and hypoxanthine production in UV-irradiated formamide solutions: relaxation of the requirements for prebiotic purine nucleobase formation. Chembiochem (2010) 1.29

Early replication of short telomeres in budding yeast. Cell (2007) 1.29

Restoration of silencing in Saccharomyces cerevisiae by tethering of a novel Sir2-interacting protein, Esc8. Genetics (2002) 1.27

Plasminogen alleles influence susceptibility to invasive aspergillosis. PLoS Genet (2008) 1.25

Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions. EMBO J (2002) 1.23

Laser microsurgery in fission yeast; role of the mitotic spindle midzone in anaphase B. Curr Biol (2004) 1.22

Histone acetylation in gene regulation. Brief Funct Genomic Proteomic (2006) 1.21

A chemostat array enables the spatio-temporal analysis of the yeast proteome. Proc Natl Acad Sci U S A (2013) 1.10

Genetics first or metabolism first? The formamide clue. Chem Soc Rev (2012) 1.08

Formamide chemistry and the origin of informational polymers. Chem Biodivers (2007) 1.08

The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Mol Cell (2010) 1.07

A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms. Nat Struct Mol Biol (2011) 1.06

Nucleoside phosphorylation by phosphate minerals. J Biol Chem (2007) 1.04

Generation of long RNA chains in water. J Biol Chem (2009) 1.01

The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization. Mol Microbiol (2006) 1.01

Gene expression waves. Cell cycle independent collective dynamics in cultured cells. FEBS J (2007) 1.00

Global DNA methylation and one-carbon metabolism gene polymorphisms and the risk of breast cancer in the Sister Study. Carcinogenesis (2013) 0.99

Nucleosome depletion activates poised RNA polymerase III at unconventional transcription sites in Saccharomyces cerevisiae. J Biol Chem (2006) 0.98

Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions. Cell (2013) 0.97

HMGB1 induces the overexpression of miR-222 and miR-221 and increases growth and motility in papillary thyroid cancer cells. Oncol Rep (2012) 0.97

The DNA sequence-dependence of nucleosome positioning in vivo and in vitro. J Biomol Struct Dyn (2010) 0.96

Origin of informational polymers: differential stability of phosphoester bonds in ribomonomers and ribooligomers. J Biol Chem (2006) 0.95

Meteorites as catalysts for prebiotic chemistry. Chemistry (2013) 0.95

H4 acetylation does not replace H3 acetylation in chromatin remodelling and transcription activation of Adr1-dependent genes. Mol Microbiol (2006) 0.94

A translational signature for nucleosome positioning in vivo. Nucleic Acids Res (2009) 0.94

Nonenzymatic RNA ligation in water. J Biol Chem (2008) 0.94

Massively parallel measurements of molecular interaction kinetics on a microfluidic platform. Proc Natl Acad Sci U S A (2012) 0.93

One-pot TiO2-catalyzed synthesis of nucleic bases and acyclonucleosides from formamide: implications for the origin of life. Chembiochem (2003) 0.93

Direct effects of polymyxin B on human dendritic cells maturation. The role of IkappaB-alpha/NF-kappaB and ERK1/2 pathways and adhesion. J Biol Chem (2005) 0.93

Synthesis and degradation of nucleobases and nucleic acids by formamide in the presence of montmorillonites. Chembiochem (2004) 0.93

Cardiac magnetic resonance and the need for routine cardiac catheterization in single ventricle patients prior to Fontan: a comparison of 3 groups: pre-Fontan CMR versus cath evaluation. J Am Coll Cardiol (2012) 0.91

Promoter architectures in the yeast ribosomal expression program. Transcription (2011) 0.91

Gcn5 and sirtuins regulate acetylation of the ribosomal protein transcription factor Ifh1. Curr Biol (2013) 0.91

Generation of RNA molecules by a base-catalysed click-like reaction. Chembiochem (2012) 0.90

Hair dye use and risk of adult acute leukemia. Am J Epidemiol (2004) 0.89

Regulation of telomere addition at DNA double-strand breaks. Chromosoma (2013) 0.88

Common chromatin architecture, common chromatin remodeling, and common transcription kinetics of Adr1-dependent genes in Saccharomyces cerevisiae. Biochemistry (2004) 0.88

Nucleosome positioning--what do we really know? Mol Biosyst (2009) 0.88

Arsenic toxicity to Saccharomyces cerevisiae is a consequence of inhibition of the TORC1 kinase combined with a chronic stress response. Mol Biol Cell (2008) 0.86

About a formamide-based origin of informational polymers: syntheses of nucleobases and favourable thermodynamic niches for early polymers. Orig Life Evol Biosph (2006) 0.86

Human recombinant heat shock protein 70 affects the maturation pathways of dendritic cells in vitro and has an in vivo adjuvant activity. J Leukoc Biol (2008) 0.85

Canine distemper epizootic among red foxes, Italy, 2009. Emerg Infect Dis (2010) 0.85

HUVEC respond to radiation by inducing the expression of pro-angiogenic microRNAs. Radiat Res (2011) 0.85

Transcriptional response of human umbilical vein endothelial cells to low doses of ionizing radiation. J Radiat Res (2005) 0.85

Distinct DNA elements contribute to Rap1p affinity for its binding sites. J Mol Biol (2004) 0.85

Is family history of breast cancer a marker of susceptibility to exposures in the incidence of de novo adult acute leukemia? Cancer Epidemiol Biomarkers Prev (2003) 0.85

DNA-end capping by the budding yeast transcription factor and subtelomeric binding protein Tbf1. EMBO J (2011) 0.85

Formamide as the main building block in the origin of nucleic acids. BMC Evol Biol (2007) 0.85

From the one-carbon amide formamide to RNA all the steps are prebiotically possible. Biochimie (2012) 0.85

Origin of informational polymers. Differential stability of 3'- and 5'-phosphoester bonds in deoxy monomers and oligomers. J Biol Chem (2005) 0.84

Synthesis and degradation of nucleic acid components by formamide and iron sulfur minerals. J Am Chem Soc (2008) 0.83

Parapoxvirus infections of red deer, Italy. Emerg Infect Dis (2011) 0.83

Molecular complexity favors the evolution of ribopolymers. Biochemistry (2008) 0.83

Histone Methylation and microRNA-dependent Regulation of Epigenetic Activities in Neural Progenitor Self-Renewal and Differentiation. Curr Top Med Chem (2017) 0.82

The KEOPS complex: a rosetta stone for telomere regulation? Cell (2006) 0.82

Untemplated nonenzymatic polymerization of 3',5'cGMP: a plausible route to 3',5'-linked oligonucleotides in primordia. J Phys Chem B (2015) 0.81

Origin of informational polymers: The concurrent roles of formamide and phosphates. Chembiochem (2006) 0.81

Low-dose ionizing radiation stimulates transcription and production of endothelin by human vein endothelial cells. Radiat Res (2007) 0.81

The SUMO E3 ligase Siz2 exerts a locus-dependent effect on gene silencing in Saccharomyces cerevisiae. Eukaryot Cell (2012) 0.81

Gene expression pathways induced by axotomy and decentralization of rat superior cervical ganglion neurons. Eur J Neurosci (2006) 0.81

Ljungan virus detected in bank voles (Myodes glareolus) and yellow-necked mice (Apodemus flavicollis) from Northern Italy. J Wildl Dis (2010) 0.81

Synthesis and degradation of nucleic Acid components by formamide and cosmic dust analogues. Chembiochem (2005) 0.80

Leptospira spp. infection in wild ruminants: a survey in Central Italian Alps. Vet Ital (2014) 0.80

Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells. Database (Oxford) (2009) 0.79

From formamide to RNA: the roles of formamide and water in the evolution of chemical information. Res Microbiol (2009) 0.79

Differentiated neuroprogenitor cells incubated with human or canine adenovirus, or lentiviral vectors have distinct transcriptome profiles. PLoS One (2013) 0.79

Changes in the optic disc excavation of children affected by cerebral visual impairment: a tomographic analysis. Invest Ophthalmol Vis Sci (2006) 0.79

The COP9 signalosome is involved in the regulation of lipid metabolism and of transition metals uptake in Saccharomyces cerevisiae. FEBS J (2013) 0.78

Genetic remodeling and transcriptional remodeling of subtelomeric heterochromatin are different. Biochemistry (2002) 0.78

Aspects of nucleosomal positional flexibility and fluidity. Chembiochem (2002) 0.78

The effects of borate minerals on the synthesis of nucleic acid bases, amino acids and biogenic carboxylic acids from formamide. Orig Life Evol Biosph (2011) 0.78

Materials for the onset. A story of necessity and chance. Front Biosci (Landmark Ed) (2013) 0.78

Alcohol intake and incidence of de novo adult acute leukemia. Leuk Res (2004) 0.77

Origin of informational polymers and the search for non-terran life: protection of the polymeric state of DNA by phosphate minerals. Astrobiology (2007) 0.77