Published in Nucleic Acids Res on January 01, 2003
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics (2004) 50.89
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res (2005) 44.08
A high-resolution map of active promoters in the human genome. Nature (2005) 24.35
Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A (2003) 16.58
Ensembl 2005. Nucleic Acids Res (2005) 15.13
ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res (2005) 11.90
Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res (2004) 9.85
A combined computational-experimental approach predicts human microRNA targets. Genes Dev (2004) 9.82
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res (2004) 9.18
The functional landscape of mouse gene expression. J Biol (2004) 5.65
RTCGD: retroviral tagged cancer gene database. Nucleic Acids Res (2004) 4.41
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res (2005) 4.15
Sequence biases in large scale gene expression profiling data. Nucleic Acids Res (2006) 3.83
Gene indexing: characterization and analysis of NLM's GeneRIFs. AMIA Annu Symp Proc (2003) 3.69
Direct isolation and identification of promoters in the human genome. Genome Res (2005) 3.68
A multigene predictor of outcome in glioblastoma. Neuro Oncol (2009) 3.57
A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array. Nucleic Acids Res (2005) 3.45
Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol (2004) 3.17
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res (2005) 2.80
Genome-scale functional profiling of the mammalian AP-1 signaling pathway. Proc Natl Acad Sci U S A (2003) 2.45
Genetic analysis of the cytoplasmic dynein subunit families. PLoS Genet (2006) 2.35
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proc Natl Acad Sci U S A (2005) 2.35
prot4EST: translating expressed sequence tags from neglected genomes. BMC Bioinformatics (2004) 2.07
The use of edge-betweenness clustering to investigate biological function in protein interaction networks. BMC Bioinformatics (2005) 1.97
Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice. Proc Natl Acad Sci U S A (2008) 1.97
Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips. BMC Genomics (2005) 1.91
G2D: a tool for mining genes associated with disease. BMC Genet (2005) 1.85
National center for biotechnology information viral genomes project. J Virol (2004) 1.84
PromoSer: A large-scale mammalian promoter and transcription start site identification service. Nucleic Acids Res (2003) 1.68
A multi-template combination algorithm for protein comparative modeling. BMC Struct Biol (2008) 1.62
ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes. BMC Bioinformatics (2006) 1.54
Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing. Genome Res (2004) 1.51
Herpesvirus systematics. Vet Microbiol (2010) 1.43
Comparison of splice sites in mammals and chicken. Genome Res (2004) 1.40
A biomedically enriched collection of 7000 human ORF clones. PLoS One (2008) 1.39
ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Res (2006) 1.39
SMART amplification combined with cDNA size fractionation in order to obtain large full-length clones. BMC Genomics (2004) 1.37
Identifying secretomes in people, pufferfish and pigs. Nucleic Acids Res (2004) 1.35
Noncoding DNA, isochores and gene expression: nucleosome formation potential. Nucleic Acids Res (2005) 1.27
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis. Genes Dev (2013) 1.27
DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants. Nucleic Acids Res (2005) 1.27
The Mouse SAGE Site: database of public mouse SAGE libraries. Nucleic Acids Res (2004) 1.21
A nomenclature for all signal recognition particle RNAs. RNA (2005) 1.20
The G protein-coupled receptor subset of the chicken genome. PLoS Comput Biol (2006) 1.20
Identification of the translocation breakpoints in the Ts65Dn and Ts1Cje mouse lines: relevance for modeling Down syndrome. Mamm Genome (2011) 1.19
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. Nucleic Acids Res (2006) 1.17
CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer. Mol Oncol (2008) 1.16
Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics (2005) 1.14
Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay. BMC Biol (2009) 1.11
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning. BMC Bioinformatics (2011) 1.08
Protein kinases associated with the yeast phosphoproteome. BMC Bioinformatics (2006) 1.06
Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta. BMC Genomics (2008) 1.05
Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria. Nucleic Acids Res (2013) 1.04
ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences. Nucleic Acids Res (2004) 1.02
Analytical model of peptide mass cluster centres with applications. Proteome Sci (2006) 1.00
A dynamic view of domain-motif interactions. PLoS Comput Biol (2012) 0.98
Involvement of histone demethylase LSD1 in short-time-scale gene expression changes during cell cycle progression in embryonic stem cells. Mol Cell Biol (2012) 0.94
siRNAdb: a database of siRNA sequences. Nucleic Acids Res (2005) 0.91
Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression. BMC Genomics (2004) 0.90
Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants. BMC Bioinformatics (2005) 0.88
Deletion in a (T)8 microsatellite abrogates expression regulation by 3'-UTR. Nucleic Acids Res (2003) 0.88
An integrative method for identifying the over-annotated protein-coding genes in microbial genomes. DNA Res (2011) 0.88
VCGDB: a dynamic genome database of the Chinese population. BMC Genomics (2014) 0.82
New insights into the Plasmodium vivax transcriptome using RNA-Seq. Sci Rep (2016) 0.82
Merging mouse transcriptome analyses with Parkinson's disease linkage studies. DNA Res (2007) 0.81
EMQN/CMGS best practice guidelines for the molecular genetic testing of Huntington disease. Eur J Hum Genet (2012) 0.78
Tools for Sequence-Based miRNA Target Prediction: What to Choose? Int J Mol Sci (2016) 0.78
Mining core histone sequences from public protein databases. Methods Enzymol (2004) 0.75
The FlyBase database of the Drosophila Genome Projects and community literature. Nucleic Acids Res (1999) 26.10
The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group. Nucleic Acids Res (2000) 20.44
Introducing RefSeq and LocusLink: curated human genome resources at the NCBI. Trends Genet (2000) 19.33
Complete genomes in WWW Entrez: data representation and analysis. Bioinformatics (1999) 19.31
Zebrafish informatics and the ZFIN database. Methods Cell Biol (1999) 16.45
Online Mendelian Inheritance in Man (OMIM). Hum Mutat (2000) 7.54
Guidelines for human gene nomenclature (1997). HUGO Nomenclature Committee. Genomics (1997) 6.44
Rat Genome Database (RGD): mapping disease onto the genome. Nucleic Acids Res (2002) 4.04
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2006) 48.10
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2005) 37.39
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res (2008) 26.04
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2005) 22.98
Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2005) 22.62
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2007) 22.53
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2008) 21.36
Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2006) 20.92
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.85
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.84
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res (2009) 14.90
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res (2011) 14.04
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51
Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature (2005) 11.99
The influenza virus resource at the National Center for Biotechnology Information. J Virol (2007) 11.33
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2010) 10.97
The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res (2008) 10.64
ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res (2013) 9.31
Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2010) 9.09
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2011) 8.62
RefSeq: an update on mammalian reference sequences. Nucleic Acids Res (2013) 7.29
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res (2011) 6.69
Splign: algorithms for computing spliced alignments with identification of paralogs. Biol Direct (2008) 5.03
ClinGen--the Clinical Genome Resource. N Engl J Med (2015) 4.45
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Locus Reference Genomic sequences: an improved basis for describing human DNA variants. Genome Med (2010) 4.19
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome. J Bacteriol (2007) 3.62
Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res (2008) 3.54
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
Concept of sample in OMICS technology. OMICS (2006) 2.74
A web-based genotyping resource for viral sequences. Nucleic Acids Res (2004) 2.68
Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes. FEMS Microbiol Lett (2002) 2.37
The NIH genetic testing registry: a new, centralized database of genetic tests to enable access to comprehensive information and improve transparency. Nucleic Acids Res (2012) 2.35
Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence variants. Nucleic Acids Res (2013) 2.18
FLAN: a web server for influenza virus genome annotation. Nucleic Acids Res (2007) 2.11
Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification. Arch Virol (2014) 2.09
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
What everybody should know about the rat genome and its online resources. Nat Genet (2008) 1.94
National center for biotechnology information viral genomes project. J Virol (2004) 1.84
Improving gene annotation of complete viral genomes. Nucleic Acids Res (2003) 1.80
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. OMICS (2008) 1.66
Cataloguing the HIV type 1 human protein interaction network. AIDS Res Hum Retroviruses (2008) 1.61
Solving the Problem: Genome Annotation Standards before the Data Deluge. Stand Genomic Sci (2011) 1.54
Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24
The Chicken Gene Nomenclature Committee report. BMC Genomics (2009) 1.15
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9. Stand Genomic Sci (2010) 1.10
PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses. Viruses (2012) 1.09
Clone DB: an integrated NCBI resource for clone-associated data. Nucleic Acids Res (2012) 1.09
Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses (2010) 0.97
eGenomics: Cataloguing our Complete Genome Collection. Comp Funct Genomics (2005) 0.93
Mining the NCBI influenza sequence database: adaptive grouping of BLAST results using precalculated neighbor indexing. PLoS Curr (2009) 0.91
Plant genome resources at the national center for biotechnology information. Plant Physiol (2005) 0.82
Getting ready for the Human Phenome Project: the 2012 forum of the Human Variome Project. Hum Mutat (2013) 0.82
Cryptic splice sites and split genes. Nucleic Acids Res (2011) 0.80
Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard. Appl Clin Inform (2016) 0.76
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010. Stand Genomic Sci (2010) 0.76