Published in FEMS Yeast Res on June 01, 2003
Why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A (2005) 6.19
The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res (2005) 5.87
Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. Proc Natl Acad Sci U S A (2005) 3.58
Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol (2004) 2.81
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci U S A (2009) 2.51
Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet (2009) 2.32
Yeast evolutionary genomics. Nat Rev Genet (2010) 2.27
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci U S A (2009) 2.25
Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proc Natl Acad Sci U S A (2007) 2.24
Comparative genomics of protoploid Saccharomycetaceae. Genome Res (2009) 1.96
Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae. Eukaryot Cell (2005) 1.95
Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus. Appl Environ Microbiol (2008) 1.94
Evolution of the MAT locus and its Ho endonuclease in yeast species. Proc Natl Acad Sci U S A (2004) 1.90
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda) (2011) 1.86
Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication. Genetics (2005) 1.59
Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. Nucleic Acids Res (2006) 1.49
Evolution and diversification of RNA silencing proteins in fungi. J Mol Evol (2006) 1.44
Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. J Clin Microbiol (2004) 1.38
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database (Oxford) (2014) 1.36
Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts. Mol Genet Genomics (2004) 1.32
Molecular-genetic biodiversity in a natural population of the yeast Saccharomyces cerevisiae from "Evolution Canyon": microsatellite polymorphism, ploidy and controversial sexual status. Genetics (2006) 1.31
Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication. PLoS Biol (2012) 1.27
Pyrosequencing reveals regional differences in fruit-associated fungal communities. Environ Microbiol (2014) 1.19
Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand. ISME J (2011) 1.18
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. Bioinformatics (2008) 1.17
Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage. PLoS Biol (2015) 1.15
Comparative genomics and genome evolution in yeasts. Philos Trans R Soc Lond B Biol Sci (2006) 1.15
Candida bracarensis detected among isolates of Candida glabrata by peptide nucleic acid fluorescence in situ hybridization: susceptibility data and documentation of presumed infection. J Clin Microbiol (2007) 1.15
Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Rep (2014) 1.13
Towards an integrated phylogenetic classification of the Tremellomycetes. Stud Mycol (2016) 1.10
Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex. Genome Res (2004) 1.10
New universal rules of eukaryotic translation initiation fidelity. PLoS Comput Biol (2013) 1.09
Sequencing-based analysis of the bacterial and fungal composition of kefir grains and milks from multiple sources. PLoS One (2013) 1.07
Rapid identification of ascomycetous yeasts from clinical specimens by a molecular method based on flow cytometry and comparison with identifications from phenotypic assays. J Clin Microbiol (2006) 1.07
Relaxation of yeast mitochondrial functions after whole-genome duplication. Genome Res (2008) 1.06
Yeast "make-accumulate-consume" life strategy evolved as a multi-step process that predates the whole genome duplication. PLoS One (2013) 1.06
Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting. Proc Natl Acad Sci U S A (2005) 1.05
A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae. FEMS Yeast Res (2008) 1.04
Review: Diversity of Microorganisms in Global Fermented Foods and Beverages. Front Microbiol (2016) 1.02
Rapid identification of Candida species and other clinically important yeast species by flow cytometry. J Clin Microbiol (2005) 1.01
Polyphasic re-examination of Debaryomyces hansenii strains and reinstatement of D. hansenii, D. fabryi and D. subglobosus. Persoonia (2008) 0.99
Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis. J Ind Microbiol Biotechnol (2009) 0.98
Expansion of hexose transporter genes was associated with the evolution of aerobic fermentation in yeasts. Mol Biol Evol (2010) 0.98
Chromosomal G + C content evolution in yeasts: systematic interspecies differences, and GC-poor troughs at centromeres. Genome Biol Evol (2010) 0.95
Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom. BMC Evol Biol (2007) 0.95
Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited. PLoS One (2011) 0.94
Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. G3 (Bethesda) (2011) 0.94
Why, when, and how did yeast evolve alcoholic fermentation? FEMS Yeast Res (2014) 0.94
Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales. J Mol Evol (2006) 0.94
Readers of PCNA modifications. Chromosoma (2013) 0.93
Comparative analyses of classical phenotypic method and ribosomal RNA gene sequencing for identification of medically relevant Candida species. Mem Inst Oswaldo Cruz (2013) 0.93
Combined phylogeny and neighborhood analysis of the evolution of the ABC transporters conferring multiple drug resistance in hemiascomycete yeasts. BMC Genomics (2009) 0.91
A surprisingly large RNase P RNA in Candida glabrata. RNA (2005) 0.90
Co-evolutionary networks of genes and cellular processes across fungal species. Genome Biol (2009) 0.89
Novel features of ARS selection in budding yeast Lachancea kluyveri. BMC Genomics (2011) 0.88
Rapid differentiation of phenotypically similar yeast species by single-strand conformation polymorphism analysis of ribosomal DNA. Appl Environ Microbiol (2008) 0.88
Molecular identification of closely related Candida species using two ribosomal intergenic spacer fingerprinting methods. J Mol Diagn (2010) 0.88
The Ty1 Retrotransposon Restriction Factor p22 Targets Gag. PLoS Genet (2015) 0.87
Occurrence and identification of yeast species in fermented liquid feed for piglets. Microb Ecol (2010) 0.87
Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species. Curr Genet (2010) 0.86
A novel method to prepare L-arabinose from xylose mother liquor by yeast-mediated biopurification. Microb Cell Fact (2011) 0.85
Evolution of ecological dominance of yeast species in high-sugar environments. Evolution (2015) 0.85
On the complexity of the Saccharomyces bayanus taxon: hybridization and potential hybrid speciation. PLoS One (2014) 0.85
Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics (2008) 0.83
A study on the fundamental mechanism and the evolutionary driving forces behind aerobic fermentation in yeast. PLoS One (2015) 0.83
The evolution of 5S ribosomal RNA genes linked to the rDNA units of fungal species. Curr Genet (2008) 0.83
Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities. ISME J (2015) 0.82
Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event? Biol Direct (2007) 0.81
Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi. PLoS One (2011) 0.81
Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast. Proc Biol Sci (2009) 0.81
Bio-ethanol production by a novel autochthonous thermo-tolerant yeast isolated from wastewater. J Environ Health Sci Eng (2014) 0.80
Computing the Internode Certainty and Related Measures from Partial Gene Trees. Mol Biol Evol (2016) 0.79
Post-zygotic sterility and cytonuclear compatibility limits in S. cerevisiae xenomitochondrial cybrids. Front Genet (2015) 0.79
Reconstruction of the evolutionary history of Saccharomyces cerevisiae x S. kudriavzevii hybrids based on multilocus sequence analysis. PLoS One (2012) 0.79
Molecular determinants of sporulation in Ashbya gossypii. Genetics (2013) 0.79
Primers for fourteen protein-coding genes and the deep phylogeny of the true yeasts. FEMS Yeast Res (2013) 0.79
Sos7, an essential component of the conserved Schizosaccharomyces pombe Ndc80-MIND-Spc7 complex, identifies a new family of fungal kinetochore proteins. Mol Cell Biol (2012) 0.79
Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda) (2016) 0.78
Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis. BMC Genomics (2014) 0.78
Catheter-Associated Rhodotorula mucilaginosa Fungemia in an Immunocompetent Host. Infect Chemother (2013) 0.78
Use of non-conventional yeast improves the wine aroma profile of Ribolla Gialla. J Ind Microbiol Biotechnol (2015) 0.78
Fungal garden making inside bamboos by a non-social fungus-growing beetle. PLoS One (2013) 0.78
Saccharomyces cerevisiae Forms d-2-Hydroxyglutarate and Couples Its Degradation to d-Lactate Formation via a Cytosolic Transhydrogenase. J Biol Chem (2016) 0.78
Combining substrate specificity analysis with support vector classifiers reveals feruloyl esterase as a phylogenetically informative protein group. PLoS One (2010) 0.77
Understanding the effect of secondary structures and aggregation on human protein folding class evolution. J Mol Evol (2010) 0.77
Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes in Ascomycota. RNA (2014) 0.77
Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions. Genome Biol Evol (2014) 0.76
Ancient gene duplication provided a key molecular step for anaerobic growth of Baker's yeast. Mol Biol Evol (2011) 0.76
The GAL10 gene is located 40 kbp away from the GAL7-GAL1 region in the yeast Kazachstania naganishii. Curr Microbiol (2011) 0.76
A phylogenetic analysis of macroevolutionary patterns in fermentative yeasts. Ecol Evol (2016) 0.75
Genetic Polymorphism in Wine Yeasts: Mechanisms and Methods for Its Detection. Front Microbiol (2017) 0.75
Molecular phylogenetic analysis reveals the new genus Hemisphaericaspora of the family Debaryomycetaceae. PLoS One (2014) 0.75
Scaffold Protein Ahk1, Which Associates with Hkr1, Sho1, Ste11, and Pbs2, Inhibits Cross Talk Signaling from the Hkr1 Osmosensor to the Kss1 Mitogen-Activated Protein Kinase. Mol Cell Biol (2016) 0.75
Crystal Structure of Saccharomyces cerevisiae ECM4, a Xi-Class Glutathione Transferase that Reacts with Glutathionyl-(hydro)quinones. PLoS One (2016) 0.75
Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage. BMC Microbiol (2017) 0.75
Reclassification of Saccharomycodes sinensis, Proposal of Yueomyces sinensis gen. nov., comb. nov. within Saccharomycetaceae (Saccharomycetales, Saccharomycotina). PLoS One (2015) 0.75
Use of yeast (Pichia kudriavzevii) as a novel feed additive to ameliorate the effects of aflatoxin B1 on broiler chicken performance. Mycotoxin Res (2017) 0.75
Glycolytic functions are conserved in the genome of the wine yeast Hanseniaspora uvarum and pyruvate kinase limits its capacity for alcoholic fermentation. Appl Environ Microbiol (2017) 0.75
Speciation in the yeast Lachancea thermotolerans: molecular genetic evidence. Dokl Biol Sci (2006) 0.75
Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res (2003) 2.33
Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res (2008) 1.63
Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species. FEMS Yeast Res (2012) 1.04
Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen. nov. and 14 new species combinations. FEMS Yeast Res (2007) 0.92
Systematics of methanol assimilating yeasts and neighboring taxa from multigene sequence analysis and the proposal of Peterozyma gen. nov., a new member of the Saccharomycetales. FEMS Yeast Res (2010) 0.83
Alloascoidea hylecoeti gen. nov., comb. nov., Alloascoidea africana comb. nov., Ascoidea tarda sp. nov., and Nadsonia starkeyi-henricii comb. nov., new members of the Saccharomycotina (Ascomycota). FEMS Yeast Res (2013) 0.82
Occultifur kilbournensis f.a. sp. nov., a new member of the Cystobasidiales associated with maize (Zea mays) cultivation. Antonie Van Leeuwenhoek (2015) 0.78
Saitoella coloradoensis sp. nov., a new species of the Ascomycota, subphylum Taphrinomycotina. Antonie Van Leeuwenhoek (2012) 0.76
Description of Kuraishia piskuri f.a., sp. nov., a new methanol assimilating yeast and transfer of phylogenetically related Candida species to the genera Kuraishia and Nakazawaea as new combinations. FEMS Yeast Res (2014) 0.75
Three new anascosporic genera of the Saccharomycotina: Danielozyma gen. nov., Deakozyma gen. nov. and Middelhovenomyces gen. nov. Antonie Van Leeuwenhoek (2014) 0.75