Published in RNA on March 01, 2004
RNA-binding domain proteins in Kinetoplastids: a comparative analysis. Eukaryot Cell (2005) 1.52
A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells. Nucleic Acids Res (2008) 1.46
Opposing effects of polyadenylation on the stability of edited and unedited mitochondrial RNAs in Trypanosoma brucei. Mol Cell Biol (2005) 1.32
The 3' untranslated region of sindbis virus represses deadenylation of viral transcripts in mosquito and Mammalian cells. J Virol (2007) 1.18
Nematode m7GpppG and m3(2,2,7)GpppG decapping: activities in Ascaris embryos and characterization of C. elegans scavenger DcpS. RNA (2004) 1.13
The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation. RNA (2011) 1.13
The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation. RNA (2013) 1.02
Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes. BMC Mol Biol (2008) 0.95
Functional characterization of three leishmania poly(a) binding protein homologues with distinct binding properties to RNA and protein partners. Eukaryot Cell (2010) 0.91
Inhibition of mRNA maturation in trypanosomes causes the formation of novel foci at the nuclear periphery containing cytoplasmic regulators of mRNA fate. J Cell Sci (2012) 0.90
PolyA-specific ribonuclease (PARN-1) function in stage-specific mRNA turnover in Trypanosoma brucei. Eukaryot Cell (2011) 0.87
Inhibition of tristetraprolin deadenylation by poly(A) binding protein. Am J Physiol Gastrointest Liver Physiol (2008) 0.87
Kiss your tail goodbye: the role of PARN, Nocturnin, and Angel deadenylases in mRNA biology. Biochim Biophys Acta (2012) 0.84
RNA Granules Living a Post-transcriptional Life: the Trypanosomes' Case. Curr Chem Biol (2011) 0.82
The protein Zfand5 binds and stabilizes mRNAs with AU-rich elements in their 3'-untranslated regions. J Biol Chem (2012) 0.79
mRNA stability in mammalian cells. Microbiol Rev (1995) 8.78
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell (2001) 7.79
The cap-to-tail guide to mRNA turnover. Nat Rev Mol Cell Biol (2001) 6.67
Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell (1998) 6.47
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell (2001) 5.86
Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast. Genes Dev (1995) 4.15
Life without transcriptional control? From fly to man and back again. EMBO J (2002) 4.14
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J (2002) 4.13
Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res (2001) 3.88
Functional link between the mammalian exosome and mRNA decapping. Cell (2001) 3.65
ELAV proteins stabilize deadenylated intermediates in a novel in vitro mRNA deadenylation/degradation system. Genes Dev (1999) 3.45
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae. EMBO J (2002) 3.10
CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. EMBO J (2002) 2.97
The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res (2001) 2.76
Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae. Annu Rev Biochem (2000) 2.66
Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation. Mol Cell Biol (1998) 2.61
Tristetraprolin and its family members can promote the cell-free deadenylation of AU-rich element-containing mRNAs by poly(A) ribonuclease. Mol Cell Biol (2003) 2.61
The yin and yang of the exosome. Trends Cell Biol (2002) 2.59
An mRNA stability complex functions with poly(A)-binding protein to stabilize mRNA in vitro. Mol Cell Biol (1999) 2.57
The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes. EMBO J (1998) 2.49
The exosome of Trypanosoma brucei. EMBO J (2001) 2.48
Poly(A) tail shortening by a mammalian poly(A)-specific 3'-exoribonuclease. J Biol Chem (1997) 2.38
PAN3 encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae. Mol Cell Biol (1996) 2.30
Control of gene expression in trypanosomes. Microbiol Rev (1995) 2.06
mRNA turnover. Curr Opin Cell Biol (2001) 1.98
Cap-dependent deadenylation of mRNA. EMBO J (2000) 1.96
Functionally unrelated signalling proteins contain a fold similar to Mg2+-dependent endonucleases. Trends Biochem Sci (2000) 1.85
Interaction between a poly(A)-specific ribonuclease and the 5' cap influences mRNA deadenylation rates in vitro. Mol Cell (2000) 1.75
The poly(A) tail inhibits the assembly of a 3'-to-5' exonuclease in an in vitro RNA stability system. Mol Cell Biol (1997) 1.71
Messenger RNA degradation: beginning at the end. Curr Biol (2002) 1.71
Poly(A)-binding proteins regulate both mRNA deadenylation and decapping in yeast cytoplasmic extracts. RNA (2001) 1.59
AU-rich elements in the 3'-untranslated region of a new mucin-type gene family of Trypanosoma cruzi confers mRNA instability and modulates translation efficiency. J Biol Chem (2000) 1.49
The roles of intersubunit interactions in exosome stability. J Biol Chem (2003) 1.43
Properties of a HeLa cell 3' exonuclease specific for degrading poly(A) tails of mammalian mRNA. J Biol Chem (1992) 1.43
An in vitro system using HeLa cytoplasmic extracts that reproduces regulated mRNA stability. Methods (1999) 1.36
TcUBP-1, a developmentally regulated U-rich RNA-binding protein involved in selective mRNA destabilization in trypanosomes. J Biol Chem (2001) 1.19
Detection in HeLa cell extracts of a 7-methyl guanosine specific enzyme activity that cleaves m7GpppNm. Cell (1975) 1.19
The mRNA cap structure stimulates rate of poly(A) removal and amplifies processivity of degradation. J Biol Chem (2001) 1.17
Expression of the human RNA-binding protein HuR in Trypanosoma brucei increases the abundance of mRNAs containing AU-rich regulatory elements. Nucleic Acids Res (2002) 1.15
Structure of a regulatory 3' untranslated region from Trypanosoma brucei. RNA (1999) 1.03
RNA-binding proteins and mRNA turnover in trypanosomes. Trends Parasitol (2003) 0.99
Identification of mRNA decapping activities and an ARE-regulated 3' to 5' exonuclease activity in trypanosome extracts. Nucleic Acids Res (2002) 0.98
RNA recognition motif-type RNA-binding proteins in Trypanosoma cruzi form a family involved in the interaction with specific transcripts in vivo. J Biol Chem (2003) 0.97
Poly(A)-binding protein I of Leishmania: functional analysis and localisation in trypanosomatid parasites. Nucleic Acids Res (2000) 0.96
Inhibition of Klenow DNA polymerase and poly(A)-specific ribonuclease by aminoglycosides. RNA (2002) 0.84
The highways and byways of mRNA decay. Nat Rev Mol Cell Biol (2007) 8.42
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J (2002) 4.13
Dengue virus type 2 infections of Aedes aegypti are modulated by the mosquito's RNA interference pathway. PLoS Pathog (2009) 3.09
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. RNA (2005) 3.08
Bringing the role of mRNA decay in the control of gene expression into focus. Trends Genet (2004) 2.98
The RNA-binding protein CUGBP1 regulates stability of tumor necrosis factor mRNA in muscle cells: implications for myotonic dystrophy. J Biol Chem (2008) 2.60
Aedes aegypti uses RNA interference in defense against Sindbis virus infection. BMC Microbiol (2008) 2.33
C6/36 Aedes albopictus cells have a dysfunctional antiviral RNA interference response. PLoS Negl Trop Dis (2010) 2.29
Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals. Nucleic Acids Res (2002) 2.00
CUG-BP binds to RNA substrates and recruits PARN deadenylase. RNA (2006) 1.78
Gene transcription in trypanosomes. Mol Biochem Parasitol (2006) 1.61
Eukaryotic Lsm proteins: lessons from bacteria. Nat Struct Mol Biol (2005) 1.60
Upstream elements present in the 3'-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals. J Biol Chem (2002) 1.58
Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells. PLoS One (2010) 1.49
Efficient in vitro amplification of chronic wasting disease PrPRES. J Virol (2007) 1.42
Trypanosomal TBP functions with the multisubunit transcription factor tSNAP to direct spliced-leader RNA gene expression. Mol Cell Biol (2005) 1.35
A noncoding RNA produced by arthropod-borne flaviviruses inhibits the cellular exoribonuclease XRN1 and alters host mRNA stability. RNA (2012) 1.32
RNA recognition by 3'-to-5' exonucleases: the substrate perspective. Biochim Biophys Acta (2007) 1.27
RNA structures that resist degradation by Xrn1 produce a pathogenic Dengue virus RNA. Elife (2014) 1.25
Sindbis virus usurps the cellular HuR protein to stabilize its transcripts and promote productive infections in mammalian and mosquito cells. Cell Host Microbe (2010) 1.22
New ways to meet your (3') end oligouridylation as a step on the path to destruction. Genes Dev (2008) 1.19
RNA polymerase II-dependent transcription in trypanosomes is associated with a SNAP complex-like transcription factor. Proc Natl Acad Sci U S A (2002) 1.18
The 3' untranslated region of sindbis virus represses deadenylation of viral transcripts in mosquito and Mammalian cells. J Virol (2007) 1.18
The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production. Science (2014) 1.14
Biochemical characterization of Trypanosoma brucei RNA polymerase II. Mol Biochem Parasitol (2006) 1.11
Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome. RNA (2006) 1.06
Lsm proteins and Hfq: Life at the 3' end. RNA Biol (2013) 1.05
Selective translation of eukaryotic mRNAs: functional molecular analysis of GRSF-1, a positive regulator of influenza virus protein synthesis. J Virol (2002) 1.04
Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei. RNA (2006) 1.03
A divergent transcription factor TFIIB in trypanosomes is required for RNA polymerase II-dependent spliced leader RNA transcription and cell viability. Eukaryot Cell (2006) 1.02
Spliced-leader RNA silencing: a novel stress-induced mechanism in Trypanosoma brucei. EMBO Rep (2007) 1.02
Lsm proteins bind and stabilize RNAs containing 5' poly(A) tracts. Nat Struct Mol Biol (2007) 1.02
The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts. PLoS Genet (2012) 1.00
The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism. RNA (2012) 0.99
Picornavirus modification of a host mRNA decay protein. MBio (2012) 0.98
RNA polymerase transcription machinery in trypanosomes. Eukaryot Cell (2007) 0.98
Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells. Genome Res (2012) 0.98
Identification of mRNA decapping activities and an ARE-regulated 3' to 5' exonuclease activity in trypanosome extracts. Nucleic Acids Res (2002) 0.98
O'nyong nyong virus molecular determinants of unique vector specificity reside in non-structural protein 3. PLoS Negl Trop Dis (2013) 0.95
Nucleophosmin is selectively deposited on mRNA during polyadenylation. Nat Struct Mol Biol (2006) 0.95
Dephosphorylation of HuR protein during alphavirus infection is associated with HuR relocalization to the cytoplasm. J Biol Chem (2012) 0.93
Changes in cellular mRNA stability, splicing, and polyadenylation through HuR protein sequestration by a cytoplasmic RNA virus. Cell Rep (2013) 0.91
RADAR: a web server for RNA data analysis and research. Nucleic Acids Res (2007) 0.91
Analysis of the products of mRNA decapping and 3'-to-5' decay by denaturing gel electrophoresis. RNA (2002) 0.90
Serum-deprivation stimulates cap-binding by PARN at the expense of eIF4E, consistent with the observed decrease in mRNA stability. Nucleic Acids Res (2005) 0.90
The 3' untranslated region of the rabies virus glycoprotein mRNA specifically interacts with cellular PCBP2 protein and promotes transcript stability. PLoS One (2012) 0.89
Messenger RNA decay in mammalian cells: the exonuclease perspective. Cell Biochem Biophys (2004) 0.89
Nucleophosmin deposition during mRNA 3' end processing influences poly(A) tail length. EMBO J (2011) 0.88
HuR-SIRT: the hairy world of posttranscriptional control. Mol Cell (2007) 0.88
Genetic regulation of protein synthesis in trypanosomes. Curr Mol Med (2004) 0.87
Cytoplasmic viruses: rage against the (cellular RNA decay) machine. PLoS Pathog (2013) 0.87
The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei. PLoS One (2009) 0.87
PolyA-specific ribonuclease (PARN-1) function in stage-specific mRNA turnover in Trypanosoma brucei. Eukaryot Cell (2011) 0.87
A cell-free mRNA stability assay reveals conservation of the enzymes and mechanisms of mRNA decay between mosquito and mammalian cell lines. Insect Biochem Mol Biol (2005) 0.85
Strategies for viral RNA stability: live long and prosper. Trends Genet (2011) 0.85
Kiss your tail goodbye: the role of PARN, Nocturnin, and Angel deadenylases in mRNA biology. Biochim Biophys Acta (2012) 0.84
HuR and translation--the missing linc(RNA). Mol Cell (2012) 0.83
Predicting consensus structures for RNA alignments via pseudo-energy minimization. Bioinform Biol Insights (2009) 0.83
Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei. Proc Natl Acad Sci U S A (2009) 0.83
Inhibition and avoidance of mRNA degradation by RNA viruses. Curr Opin Microbiol (2012) 0.82
The preparation and applications of cytoplasmic extracts from mammalian cells for studying aspects of mRNA decay. Methods Enzymol (2008) 0.82
Virus-mediated mRNA decay by hyperadenylation. Genome Biol (2009) 0.82
Polyadenylation: alternative lifestyles of the A-rich (and famous?). EMBO J (2010) 0.81
The relationship between the prothrombin upstream sequence element and the G20210A polymorphism: the influence of a competitive environment for mRNA 3'-end formation. Nucleic Acids Res (2005) 0.80
In vivo transcription analysis utilizing chromatin immunoprecipation reveals a role for trypanosome transcription factor PBP-1 in RNA polymerase III-dependent transcription. Mol Biochem Parasitol (2004) 0.80
Transcription and mRNA stability: parental guidance suggested. Cell (2011) 0.79
Translational symphony in (hnRNP) C major for APP. Nat Struct Mol Biol (2010) 0.79
RNA stability: is it the endo' the world as we know it? Nat Struct Mol Biol (2009) 0.79
Consequences of mRNA wardrobe malfunctions. Cell (2010) 0.79
Viruses: overturning RNA turnover. RNA Biol (2006) 0.79
Development of an in vitro mRNA decay system in insect cells. Methods Mol Biol (2008) 0.79
A DIStinctively novel exoribonuclease that really likes U. EMBO J (2013) 0.78
Detecting conserved secondary structures in RNA molecules using constrained structural alignment. Comput Biol Chem (2008) 0.77
Chapter 5. In vivo analysis of the decay of transcripts generated by cytoplasmic RNA viruses. Methods Enzymol (2008) 0.76
trans Regulation: do mRNAs have a herd mentality? Dev Cell (2010) 0.76
Assessing messenger RNA decapping in cellular extracts. Methods Mol Biol (2004) 0.76
Chromatin immunoprecipitation and microarray analysis reveal that TFIIB occupies the SL RNA gene promoter region in Trypanosoma brucei chromosomes. Mol Biochem Parasitol (2012) 0.75
Ring around the Ro-sie: RNA-mediated alterations of PNPase activity. Cell (2013) 0.75
Methods in molecular biology. Preface. Methods Mol Biol (2008) 0.75
In vitro transcription of modified RNAs. Methods Mol Biol (2012) 0.75
Analysis of RNA exonucleolytic activities in cellular extracts. Methods Mol Biol (2004) 0.75