Auto-validation of fluorescent primer extension genotyping assay using signal clustering and neural networks.

PubWeight™: 0.76‹?›

🔗 View Article (PMC 406493)

Published in BMC Bioinformatics on April 02, 2004

Authors

Ching Yu Austin Huang1, Joel Studebaker, Anton Yuryev, Jianping Huang, Kathryn E Scott, Jennifer Kuebler, Shobha Varde, Steven Alfisi, Craig A Gelfand, Mark Pohl, Michael T Boyce-Jacino

Author Affiliations

1: Center for Pharmacogenomics and Complex Disease Research, Newark, NJ 07101, USA. austin.huang@umdnj.edu

Articles by these authors

Large-scale genotyping of complex DNA. Nat Biotechnol (2003) 10.00

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol (2010) 7.08

Cutting edge: persistence of transferred lymphocyte clonotypes correlates with cancer regression in patients receiving cell transfer therapy. J Immunol (2004) 4.73

Extracting human protein interactions from MEDLINE using a full-sentence parser. Bioinformatics (2004) 4.14

Telomere length of transferred lymphocytes correlates with in vivo persistence and tumor regression in melanoma patients receiving cell transfer therapy. J Immunol (2005) 4.10

HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples. Proteomics (2005) 2.71

SNPstream UHT: ultra-high throughput SNP genotyping for pharmacogenomics and drug discovery. Biotechniques (2002) 2.25

beta-Adrenergic receptor polymorphisms and responses during titration of metoprolol controlled release/extended release in heart failure. Clin Pharmacol Ther (2005) 2.20

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature (2007) 2.12

Binding properties and evolution of homodimers in protein-protein interaction networks. Nucleic Acids Res (2005) 2.10

Human effector CD8+ T cells derived from naive rather than memory subsets possess superior traits for adoptive immunotherapy. Blood (2010) 2.01

Kalirin, a multifunctional Rho guanine nucleotide exchange factor, is necessary for maintenance of hippocampal pyramidal neuron dendrites and dendritic spines. J Neurosci (2003) 1.60

Quantitative, spatial resolution of the epigenetic field effect in prostate cancer. Prostate (2008) 1.46

Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics (2013) 1.35

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks. BMC Bioinformatics (2007) 1.30

High-density single-nucleotide polymorphism maps of the human genome. Genomics (2005) 1.27

Prevalence and determinants of metabolic syndrome among women in Chinese rural areas. PLoS One (2012) 1.20

Pharmacokinetics and CYP2D6 genotypes do not predict metoprolol adverse events or efficacy in hypertension. Clin Pharmacol Ther (2004) 1.20

Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma. J Proteome Res (2007) 1.17

Pathway analysis software as a tool for drug target selection, prioritization and validation of drug mechanism. Expert Opin Ther Targets (2007) 1.12

Predicting the success of primer extension genotyping assays using statistical modeling. Nucleic Acids Res (2002) 1.07

Molecular networks in microarray analysis. J Bioinform Comput Biol (2007) 1.04

Computational approaches for drug repositioning and combination therapy design. J Bioinform Comput Biol (2010) 1.00

Development of a multiplexed urine assay for prostate cancer diagnosis. Clin Chem (2008) 0.99

Preparation of novel aza-1,7-annulated indoles and their conversion to potent indolocarbazole kinase inhibitors. Bioorg Med Chem Lett (2004) 0.97

Intrinsic peptidase activity causes a sequential multi-step reaction (SMSR) in digestion of human plasma peptides. J Proteome Res (2008) 0.95

Region-specific detection of neuroblastoma loss of heterozygosity at multiple loci simultaneously using a SNP-based tag-array platform. Genome Res (2005) 0.95

The thermodynamics of template-directed DNA synthesis: base insertion and extension enthalpies. Proc Natl Acad Sci U S A (2003) 0.93

Induction of lamellipodia by Kalirin does not require its guanine nucleotide exchange factor activity. Exp Cell Res (2005) 0.93

Custom CGH array profiling of copy number variations (CNVs) on chromosome 6p21.32 (HLA locus) in patients with venous malformations associated with multiple sclerosis. BMC Med Genet (2010) 0.92

Mutations in NPHS2 in sporadic steroid-resistant nephrotic syndrome in Chinese children. Nephrol Dial Transplant (2005) 0.92

Pathway analysis for design of promiscuous drugs and selective drug mixtures. Curr Drug Discov Technol (2006) 0.91

Reactions of Chinese adults to warning labels on cigarette packages: a survey in Jiangsu Province. BMC Public Health (2011) 0.89

A simple and practical dictionary-based approach for identification of proteins in Medline abstracts. J Am Med Inform Assoc (2004) 0.88

The role of soluble CD40L in immunosuppression. Oncoimmunology (2013) 0.88

Atlas of signaling for interpretation of microarray experiments. PLoS One (2010) 0.87

Diethyl 4,4'-(diazenediyl)dibenzoate. Acta Crystallogr Sect E Struct Rep Online (2011) 0.87

Primer design and marker clustering for multiplex SNP-IT primer extension genotyping assay using statistical modeling. Bioinformatics (2004) 0.86

The effect of fresh bone marrow cells on reconstruction of mouse calvarial defect combined with calvarial osteoprogenitor cells and collagen-apatite scaffold. J Tissue Eng Regen Med (2012) 0.86

Facial pain with localized and widespread manifestations: separate pathways of vulnerability. Pain (2013) 0.86

Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium. Stand Genomic Sci (2012) 0.85

Bone tissue engineering with a collagen-hydroxyapatite scaffold and culture expanded bone marrow stromal cells. J Biomed Mater Res B Appl Biomater (2014) 0.84

Experimental validation of data mined single nucleotide polymorphisms from several databases and consecutive dbSNP builds. Pharmacogenet Genomics (2006) 0.83

Minimizing preanalytical variation of plasma samples by proper blood collection and handling. Methods Mol Biol (2011) 0.82

Top-down proteomics on a high-field Fourier transform ion cyclotron resonance mass spectrometer. Methods Mol Biol (2009) 0.82

Free-flow electrophoresis for top-down proteomics by Fourier transform ion cyclotron resonance mass spectrometry. Proteomics (2008) 0.82

Surgical management of gynecomastia under endoscope. J Laparoendosc Adv Surg Tech A (2008) 0.82

Visualizing osteogenesis in vivo within a cell-scaffold construct for bone tissue engineering using two-photon microscopy. Tissue Eng Part C Methods (2013) 0.81

pH-Responsive Gas-Water-Solid Interface for Multiphase Catalysis. J Am Chem Soc (2015) 0.81

Thrombin induces broad spectrum proteolysis in human serum samples. Clin Chem Lab Med (2009) 0.80

WT1 gene mutations in Chinese children with early onset nephrotic syndrome. Pediatr Res (2010) 0.79

Glucocorticoid-induced osteoporosis in growing rats. Calcif Tissue Int (2014) 0.79

Synthesis of polyfunctionalized biphenyls as intermediates for a new class of liquid crystals. J Org Chem (2003) 0.79

Prediction of protein-protein interactions on the basis of evolutionary conservation of protein functions. Evol Bioinform Online (2007) 0.78

Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi. J Integr Bioinform (2010) 0.78

[Analysis of glucocorticoid receptor gene polymorphisms by denaturing high-performance liquid chromatography]. Beijing Da Xue Xue Bao (2003) 0.77

Genetic variations of the NR3C1 gene in children with sporadic nephrotic syndrome. Biochem Biophys Res Commun (2006) 0.77

Prediction of skin sensitization with a particle swarm optimized support vector machine. Int J Mol Sci (2009) 0.77

A novel mutation of NPHS2 identified in a Chinese family. Pediatr Nephrol (2004) 0.77

The effects of atorvastatin on the prevention of osteoporosis and dyslipidemia in the high-fat-fed ovariectomized rats. Calcif Tissue Int (2015) 0.76

Clinical efficacy and sEMG analysis of a new traditional Chinese medicine therapy in the treatment of spasticity following apoplectic hemiparalysis. Acta Neurol Belg (2014) 0.76

Application of free flow electrophoresis to the analysis of the urine proteome. Methods Mol Biol (2010) 0.76

Resolution of adiponectin oligomers in human plasma using free flow electrophoresis. Arch Physiol Biochem (2009) 0.76

1,7-annulated indolocarbazoles as cyclin-dependent kinase inhibitors. Bioorg Med Chem Lett (2004) 0.76

Investigation of peptide biomarker stability in plasma samples using time-course MS analysis. Methods Mol Biol (2011) 0.76

Tetra-μ(2)-acetato-diaqua-bis-(μ(2)-2-{[1,3-dihy-droxy-2-(oxidometh-yl)propan-2-yl]imino-meth-yl}phenolato)trimanganese(II,III) acetonitrile disolvate dihydrate. Acta Crystallogr Sect E Struct Rep Online (2011) 0.75

(Ferrocene-carboxyl-ato-κO)triphenyl-tin(IV). Acta Crystallogr Sect E Struct Rep Online (2010) 0.75

Advanced computational techniques for re-sequencing DNA with polymerase signaling assay arrays. Nucleic Acids Res (2003) 0.75

A quicker degradation rate is yielded by a novel kind of transgenic silk fibroin consisting of shortened silk fibroin heavy chains fused with matrix metalloproteinase cleavage sites. J Mater Sci Mater Med (2014) 0.75

Using thin-film piezoelectret to detect tactile and slip signals for restoring sensation of prosthetic hands. Conf Proc IEEE Eng Med Biol Soc (2014) 0.75

Automated detection of cloud and aerosol features with SACOL micro-pulse lidar in northwest China. Opt Express (2017) 0.75

Targeting transcription factors in cell regulation. Expert Opin Ther Targets (2006) 0.75

[Trends and forecast of hepatocellular carcinoma in Nantong, China: mortality rates from 1999 to 2011]. Zhonghua Gan Zang Bing Za Zhi (2015) 0.75

Discriminating multiplexed GFP reporters in primary articular chondrocyte cultures using image cytometry. J Fluoresc (2014) 0.75

Henoch-Schönlein purpura associated with antiphospholipid syndrome. Pediatr Nephrol (2009) 0.75

The depolarization-attenuated backscatter relationship for dust plumes. Opt Express (2013) 0.75

Successful treatment and clearing of circulating CD19-positive cells by rituximab in a child with idiopathic membranous nephropathy. Pediatr Nephrol (2010) 0.75

Transition metal-mediated C═O and C═C bond-forming reactions: a regioselective strategy for the synthesis of imidazo[1,2-a]pyridines and imidazo[1,2-a]pyrazines. J Org Chem (2014) 0.75

Using wavelet analysis to reveal the muscle functional recovery following nerve reinnervation in a rat model. Conf Proc IEEE Eng Med Biol Soc (2014) 0.75

Silver-Containing α-MnO2 Nanorods: Electrochemistry in Na-Based Battery Systems. ACS Appl Mater Interfaces (2016) 0.75

Determination of DNA by Rayleigh light scattering enhancement of molecular "light switches". Analyst (2003) 0.75

Developing a statistical model for primer design. Methods Mol Biol (2007) 0.75