Published in FEBS Lett on August 27, 2004
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Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science (2013) 1.62
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Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes. Genome Biol (2006) 1.44
Gene expression profiling identifies molecular pathways associated with collagen VI deficiency and provides novel therapeutic targets. PLoS One (2013) 1.44
Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. Genes Dev (2006) 1.41
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IGF1 is a common target gene of Ewing's sarcoma fusion proteins in mesenchymal progenitor cells. PLoS One (2008) 1.38
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Profiling early lung immune responses in the mouse model of tuberculosis. PLoS One (2011) 1.36
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Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis. Plant Physiol (2011) 1.34
Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. Plant Cell (2007) 1.31
The key sigma factor of transition phase, SigH, controls sporulation, metabolism, and virulence factor expression in Clostridium difficile. J Bacteriol (2011) 1.30
The genetic requirements for fast and slow growth in mycobacteria. PLoS One (2009) 1.29
Expression of the Epstein-Barr virus-encoded Epstein-Barr virus nuclear antigen 1 in Hodgkin's lymphoma cells mediates Up-regulation of CCL20 and the migration of regulatory T cells. Am J Pathol (2008) 1.29
Differentially expressed RNA from public microarray data identifies serum protein biomarkers for cross-organ transplant rejection and other conditions. PLoS Comput Biol (2010) 1.27
A weighted average difference method for detecting differentially expressed genes from microarray data. Algorithms Mol Biol (2008) 1.27
Selecting control genes for RT-QPCR using public microarray data. BMC Bioinformatics (2009) 1.26
Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays. BMC Genomics (2008) 1.25
Target analysis by integration of transcriptome and ChIP-seq data with BETA. Nat Protoc (2013) 1.24
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. Algorithms Mol Biol (2009) 1.24
A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network. PLoS One (2012) 1.23
Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiol (2010) 1.22
Dual roles of reactive oxygen species and NADPH oxidase RBOHD in an Arabidopsis-Alternaria pathosystem. Plant Physiol (2009) 1.22
A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves. Plant Physiol (2009) 1.22
The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. BMC Genomics (2008) 1.22
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Metabolomics to unveil and understand phenotypic diversity between pathogen populations. PLoS Negl Trop Dis (2010) 1.21
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Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome Biol (2012) 1.20
Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs. Proc Natl Acad Sci U S A (2010) 1.20
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The plant cuticle is required for osmotic stress regulation of abscisic acid biosynthesis and osmotic stress tolerance in Arabidopsis. Plant Cell (2011) 1.18
Gene expression profiling in whole blood of patients with coronary artery disease. Clin Sci (Lond) (2010) 1.17
Human endometrial side population cells exhibit genotypic, phenotypic and functional features of somatic stem cells. PLoS One (2010) 1.17
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst Biol (2011) 1.17
Adaptive strategies and pathogenesis of Clostridium difficile from in vivo transcriptomics. Infect Immun (2013) 1.17
Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Mol Syst Biol (2009) 1.17
The light responsive transcriptome of the zebrafish: function and regulation. PLoS One (2011) 1.16
Digital gene expression analysis of two life cycle stages of the human-infective parasite, Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes. BMC Genomics (2010) 1.16
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The protein kinase A pathway-regulated transcriptome of endometrial stromal fibroblasts reveals compromised differentiation and persistent proliferative potential in endometriosis. Endocrinology (2010) 1.15
Enhancing nucleotide metabolism protects against mitochondrial dysfunction and neurodegeneration in a PINK1 model of Parkinson's disease. Nat Cell Biol (2014) 1.15
The F-box protein ACRE189/ACIF1 regulates cell death and defense responses activated during pathogen recognition in tobacco and tomato. Plant Cell (2008) 1.15
FGF signaling regulates otic placode induction and refinement by controlling both ectodermal target genes and hindbrain Wnt8a. Dev Biol (2010) 1.15
LL5beta: a regulator of postsynaptic differentiation identified in a screen for synaptically enriched transcripts at the neuromuscular junction. J Cell Biol (2005) 1.15
Genome-wide assessment of AU-rich elements by the AREScore algorithm. PLoS Genet (2012) 1.15
Gene regulatory networks mediating canonical Wnt signal-directed control of pluripotency and differentiation in embryo stem cells. Stem Cells (2013) 1.14
The control of human mesenchymal cell differentiation using nanoscale symmetry and disorder. Nat Mater (2007) 6.86
Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. BMC Bioinformatics (2004) 3.57
A UV-B-specific signaling component orchestrates plant UV protection. Proc Natl Acad Sci U S A (2005) 2.79
EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture. Plant J (2008) 2.43
Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data. J Bioinform Comput Biol (2005) 2.13
The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol (2004) 2.02
Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant J (2003) 1.93
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Res (2011) 1.90
The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science (2008) 1.80
Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing. J Virol (2010) 1.75
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell (2012) 1.74
High-resolution human cytomegalovirus transcriptome. Proc Natl Acad Sci U S A (2011) 1.67
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Scanning peptide array analyses identify overlapping binding sites for the signalling scaffold proteins, beta-arrestin and RACK1, in cAMP-specific phosphodiesterase PDE4D5. Biochem J (2006) 1.46
Function-informed transcriptome analysis of Drosophila renal tubule. Genome Biol (2004) 1.43
FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster. Nucleic Acids Res (2012) 1.37
From the soil to the seeds: the long journey of nitrate in plants. J Exp Bot (2010) 1.37
Thellungiella halophila, a salt-tolerant relative of Arabidopsis thaliana, has specific root ion-channel features supporting K+/Na+ homeostasis under salinity stress. Plant J (2006) 1.31
Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis. Plant Cell Environ (2008) 1.30
Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biol (2013) 1.30
Systems dynamic modeling of the stomatal guard cell predicts emergent behaviors in transport, signaling, and volume control. Plant Physiol (2012) 1.28
Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol (2009) 1.26
Arabidopsis thaliana cyclic nucleotide gated channel 3 forms a non-selective ion transporter involved in germination and cation transport. J Exp Bot (2006) 1.18
Identification of bacterial target proteins for the salicylidene acylhydrazide class of virulence-blocking compounds. J Biol Chem (2011) 1.15
N-glycan production in the endoplasmic reticulum of plants. Trends Plant Sci (2009) 1.15
Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei. Proteomics (2008) 1.15
Rapid disruption of axon-glial integrity in response to mild cerebral hypoperfusion. J Neurosci (2011) 1.13
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OnGuard, a computational platform for quantitative kinetic modeling of guard cell physiology. Plant Physiol (2012) 1.11
The effect of potassium nutrition on pest and disease resistance in plants. Physiol Plant (2008) 1.11
The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J Exp Bot (2012) 1.10
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The role of microtopography in cellular mechanotransduction. Biomaterials (2012) 1.02
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Natural variation of Arabidopsis root architecture reveals complementing adaptive strategies to potassium starvation. Plant Physiol (2013) 1.00
Divergent routes to oral cancer. Cancer Res (2006) 0.99
Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. Plant Cell (2012) 0.99
Metal selectivity determinants in a family of transition metal transporters. J Biol Chem (2011) 0.94
Coronatine-insensitive 1 (COI1) mediates transcriptional responses of Arabidopsis thaliana to external potassium supply. Mol Plant (2010) 0.92
Potassium channels in barley: cloning, functional characterization and expression analyses in relation to leaf growth and development. Plant Cell Environ (2009) 0.92
A minimal cysteine motif required to activate the SKOR K+ channel of Arabidopsis by the reactive oxygen species H2O2. J Biol Chem (2010) 0.92
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A gene signature for post-infectious chronic fatigue syndrome. BMC Med Genomics (2009) 0.90
Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up? Planta (2004) 0.90
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