Published in Development on September 29, 2004
Global analysis of X-chromosome dosage compensation. J Biol (2006) 3.78
Switching of the core transcription machinery during myogenesis. Genes Dev (2007) 3.15
MyoD targets TAF3/TRF3 to activate myogenin transcription. Mol Cell (2008) 2.78
Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet (2010) 2.15
Comparative genomics of Drosophila and human core promoters. Genome Biol (2006) 1.99
Maintenance of spermatogenesis requires TAF4b, a gonad-specific subunit of TFIID. Genes Dev (2005) 1.92
TAF4 nucleates a core subcomplex of TFIID and mediates activated transcription from a TATA-less promoter. Proc Natl Acad Sci U S A (2006) 1.84
Coactivator cross-talk specifies transcriptional output. Genes Dev (2006) 1.79
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Cell Res (2010) 1.64
Shifting players and paradigms in cell-specific transcription. Mol Cell (2009) 1.60
Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis. Genome Biol (2010) 1.38
Promoting developmental transcription. Development (2010) 1.37
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome. Genome Biol (2009) 1.36
Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol Cell Biol (2006) 1.31
Abnormal sperm in mice lacking the Taf7l gene. Mol Cell Biol (2007) 1.30
TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes Dev (2009) 1.27
Cell-type-selective induction of c-jun by TAF4b directs ovarian-specific transcription networks. Proc Natl Acad Sci U S A (2006) 1.24
Discovery of tMAC: a Drosophila testis-specific meiotic arrest complex paralogous to Myb-Muv B. Genes Dev (2007) 1.23
Two isoforms of Drosophila TRF2 are involved in embryonic development, premeiotic chromatin condensation, and proper differentiation of germ cells of both sexes. Mol Cell Biol (2006) 1.20
Accelerated ovarian aging in the absence of the transcription regulator TAF4B in mice. Biol Reprod (2009) 1.18
TAF9b (formerly TAF9L) is a bona fide TAF that has unique and overlapping roles with TAF9. Mol Cell Biol (2005) 1.17
Tombola, a tesmin/TSO1-family protein, regulates transcriptional activation in the Drosophila male germline and physically interacts with always early. Development (2007) 1.17
Alternative splicing of NURF301 generates distinct NURF chromatin remodeling complexes with altered modified histone binding specificities. PLoS Genet (2009) 1.15
Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res (2014) 1.15
Transforming growth factor-beta regulates basal transcriptional regulatory machinery to control cell proliferation and differentiation in cranial neural crest-derived osteoprogenitor cells. J Biol Chem (2009) 1.14
Translational control of meiotic cell cycle progression and spermatid differentiation in male germ cells by a novel eIF4G homolog. Development (2007) 1.08
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Genes Dev (2011) 1.08
Sequential changes at differentiation gene promoters as they become active in a stem cell lineage. Development (2011) 1.05
ATM and ATR pathways signal alternative splicing of Drosophila TAF1 pre-mRNA in response to DNA damage. Mol Cell Biol (2006) 1.05
Selective interaction between Trf3 and Taf3 required for early development and hematopoiesis. Dev Dyn (2009) 1.04
Regulation of male fertility by X-linked genes. J Androl (2009) 1.01
Ovarian granulosa cell survival and proliferation requires the gonad-selective TFIID subunit TAF4b. Dev Biol (2006) 1.00
Evolutionary origin of regulatory regions of retrogenes in Drosophila. BMC Genomics (2008) 0.99
FlyTED: the Drosophila Testis Gene Expression Database. Nucleic Acids Res (2009) 0.98
Specific variants of general transcription factors regulate germ cell development in diverse organisms. Biochim Biophys Acta (2009) 0.98
Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID. Biochim Biophys Acta (2010) 0.97
A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression. Genes Dev (2009) 0.97
A retrocopy of a gene can functionally displace the source gene in evolution. Nucleic Acids Res (2005) 0.96
Transcriptional control of spermatogonial maintenance and differentiation. Semin Cell Dev Biol (2014) 0.93
Drcd-1 related: a positively selected spermatogenesis retrogene in Drosophila. Genetica (2010) 0.92
TBP-related factors: a paradigm of diversity in transcription initiation. Cell Biosci (2011) 0.92
Transcriptional regulation by Modulo integrates meiosis and spermatid differentiation in male germ line. Proc Natl Acad Sci U S A (2006) 0.92
Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression. Dev Biol (2011) 0.91
Core promoter factor TAF9B regulates neuronal gene expression. Elife (2014) 0.91
Taf1 regulates Pax3 protein by monoubiquitination in skeletal muscle progenitors. Mol Cell (2010) 0.90
Analysis of the Drosophila melanogaster testes transcriptome reveals coordinate regulation of paralogous genes. Genetics (2008) 0.89
Message in a nucleus: signaling to the transcriptional machinery. Curr Opin Genet Dev (2008) 0.89
Three levels of regulation lead to protamine and Mst77F expression in Drosophila. Dev Biol (2013) 0.88
Unique aspects of transcription regulation in male germ cells. Cold Spring Harb Perspect Biol (2011) 0.88
Epigenetic regulation of germ cell differentiation. Curr Opin Cell Biol (2010) 0.87
Escargot restricts niche cell to stem cell conversion in the Drosophila testis. Cell Rep (2014) 0.85
The bromodomain-containing protein tBRD-1 is specifically expressed in spermatocytes and is essential for male fertility. Biol Open (2012) 0.85
Gene expression disruptions of organism versus organ in Drosophila species hybrids. PLoS One (2008) 0.85
The bHLH/PAS transcription factor singleminded 2s promotes mammary gland lactogenic differentiation. Development (2010) 0.84
Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells. BMC Dev Biol (2012) 0.84
The polyubiquitin gene Ubi-p63E is essential for male meiotic cell cycle progression and germ cell differentiation in Drosophila. Development (2013) 0.83
The CPEB protein Orb2 has multiple functions during spermatogenesis in Drosophila melanogaster. PLoS Genet (2012) 0.83
Molecular evolution of the testis TAFs of Drosophila. Mol Biol Evol (2009) 0.83
The RNA export factor, Nxt1, is required for tissue specific transcriptional regulation. PLoS Genet (2013) 0.82
Neighbourhood continuity is not required for correct testis gene expression in Drosophila. PLoS Biol (2010) 0.82
Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters. BMC Genomics (2012) 0.82
Gene duplication, tissue-specific gene expression and sexual conflict in stalk-eyed flies (Diopsidae). Philos Trans R Soc Lond B Biol Sci (2012) 0.82
Genome-wide and cell-specific epigenetic analysis challenges the role of polycomb in Drosophila spermatogenesis. PLoS Genet (2013) 0.81
The developmental origins of the mammalian ovarian reserve. Development (2015) 0.81
A novel predicted bromodomain-related protein affects coordination between meiosis and spermiogenesis in Drosophila and is required for male meiotic cytokinesis. DNA Cell Biol (2010) 0.81
Anent the genomics of spermatogenesis in Drosophila melanogaster. PLoS One (2013) 0.81
Relocation facilitates the acquisition of short cis-regulatory regions that drive the expression of retrogenes during spermatogenesis in Drosophila. Mol Biol Evol (2014) 0.81
Molecular characterization of teflon, a gene required for meiotic autosome segregation in male Drosophila melanogaster. Genetics (2006) 0.80
Organization and regulation of sex-specific thioredoxin encoding genes in the genus Drosophila. Dev Genes Evol (2007) 0.78
tBRD-1 selectively controls gene activity in the Drosophila testis and interacts with two new members of the bromodomain and extra-terminal (BET) family. PLoS One (2014) 0.78
Transcriptional regulation during Drosophila spermatogenesis. Spermatogenesis (2012) 0.78
The transcriptional regulator lola is required for stem cell maintenance and germ cell differentiation in the Drosophila testis. Dev Biol (2012) 0.78
Spermatogenesis Drives Rapid Gene Creation and Masculinization of the X Chromosome in Stalk-Eyed Flies (Diopsidae). Genome Biol Evol (2016) 0.78
Recruitment of Mediator Complex by Cell Type and Stage-Specific Factors Required for Tissue-Specific TAF Dependent Gene Activation in an Adult Stem Cell Lineage. PLoS Genet (2015) 0.77
Diversity in TAF proteomics: consequences for cellular differentiation and migration. Int J Mol Sci (2014) 0.76
Integrating the interactome and the transcriptome of Drosophila. BMC Bioinformatics (2014) 0.76
The Drosophila Translational Control Element (TCE) is required for high-level transcription of many genes that are specifically expressed in testes. PLoS One (2012) 0.76
Functional specialization of two paralogous TAF12 variants by their selective association with SAGA and TFIID transcriptional regulatory complexes. J Biol Chem (2017) 0.75
tBRD-1 and tBRD-2 regulate expression of genes necessary for spermatid differentiation. Biol Open (2017) 0.75
Analysis of Drosophila p8 and p52 mutants reveals distinct roles for the maintenance of TFIIH stability and male germ cell differentiation. Open Biol (2016) 0.75
Investigating spermatogenesis in Drosophila melanogaster. Methods (2014) 0.75
Regulation of ALF promoter activity in Xenopus oocytes. PLoS One (2009) 0.75
Polycomb-dependent nucleolus localization of Jumonji/Jarid2 during Drosophila spermatogenesis. Spermatogenesis (2016) 0.75
The piRNA pathway is developmentally regulated during spermatogenesis in Drosophila. RNA (2016) 0.75
mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H(+)-ATPase. Science (2011) 7.55
The microRNA miR-34a inhibits prostate cancer stem cells and metastasis by directly repressing CD44. Nat Med (2011) 6.85
Orientation of asymmetric stem cell division by the APC tumor suppressor and centrosome. Science (2003) 6.72
Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter. Nature (2011) 6.48
BMP4 initiates human embryonic stem cell differentiation to trophoblast. Nat Biotechnol (2002) 6.20
A whole-cell computational model predicts phenotype from genotype. Cell (2012) 5.98
DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival. Cell (2009) 5.97
dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res (2012) 4.91
Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proc Natl Acad Sci U S A (2003) 4.67
Asymmetric inheritance of mother versus daughter centrosome in stem cell division. Science (2007) 4.59
Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome. Genome Res (2010) 3.94
The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status. Am J Pathol (2004) 3.84
The metabolic profile of tumors depends on both the responsible genetic lesion and tissue type. Cell Metab (2012) 3.81
Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer. Cell (2012) 3.77
Directed neural differentiation of human embryonic stem cells via an obligated primitive anterior stage. Stem Cells (2007) 3.71
Centrosome misorientation reduces stem cell division during ageing. Nature (2008) 3.66
A chemical probe selectively inhibits G9a and GLP methyltransferase activity in cells. Nat Chem Biol (2011) 3.60
Multigait soft robot. Proc Natl Acad Sci U S A (2011) 3.57
Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors. Proc Natl Acad Sci U S A (2007) 3.20
Topoisomerase inhibitors unsilence the dormant allele of Ube3a in neurons. Nature (2011) 3.19
Decoding global gene expression programs in liver cancer by noninvasive imaging. Nat Biotechnol (2007) 3.17
[GSDS: a gene structure display server]. Yi Chuan (2007) 3.02
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy. Nat Biotechnol (2012) 2.98
Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time. Science (2005) 2.88
The PSA(-/lo) prostate cancer cell population harbors self-renewing long-term tumor-propagating cells that resist castration. Cell Stem Cell (2012) 2.69
Mitofusin-1 protein is a generally expressed mediator of mitochondrial fusion in mammalian cells. J Cell Sci (2003) 2.68
Cholangiocarcinomas can originate from hepatocytes in mice. J Clin Invest (2012) 2.56
Distinct pathways of genomic progression to benign and malignant tumors of the liver. Proc Natl Acad Sci U S A (2007) 2.56
Follicular T-helper cell recruitment governed by bystander B cells and ICOS-driven motility. Nature (2013) 2.52
Increased lipogenesis, induced by AKT-mTORC1-RPS6 signaling, promotes development of human hepatocellular carcinoma. Gastroenterology (2010) 2.48
Organic cation transporters are determinants of oxaliplatin cytotoxicity. Cancer Res (2006) 2.37
Expression of a functionally active gp91phox-containing neutrophil-type NAD(P)H oxidase in smooth muscle cells from human resistance arteries: regulation by angiotensin II. Circ Res (2002) 2.27
A genome-wide RNA interference screen in Drosophila melanogaster cells for new components of the Hh signaling pathway. Nat Genet (2005) 2.26
c-Jun N-terminal kinases mediate reactivation of Akt and cardiomyocyte survival after hypoxic injury in vitro and in vivo. Circ Res (2005) 2.23
Single ion-channel recordings using glass nanopore membranes. J Am Chem Soc (2007) 2.22
Mesenchymal cells of the intestinal lamina propria. Annu Rev Physiol (2011) 2.18
PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Res (2007) 2.17
PC3 human prostate carcinoma cell holoclones contain self-renewing tumor-initiating cells. Cancer Res (2008) 2.16
MICU1 controls both the threshold and cooperative activation of the mitochondrial Ca²⁺ uniporter. Cell Metab (2013) 2.15
Soft robotics for chemists. Angew Chem Int Ed Engl (2011) 2.14
MSOAR: a high-throughput ortholog assignment system based on genome rearrangement. J Comput Biol (2007) 2.14
Tissue-specific TAFs counteract Polycomb to turn on terminal differentiation. Science (2005) 2.13
S-nitrosylation from GSNOR deficiency impairs DNA repair and promotes hepatocarcinogenesis. Sci Transl Med (2010) 2.13
Rapamycin inhibits differentiation of Th17 cells and promotes generation of FoxP3+ T regulatory cells. Int Immunopharmacol (2007) 2.08
Electrochemical sensing in paper-based microfluidic devices. Lab Chip (2009) 2.06
Mutations of PIK3CA in gastric adenocarcinoma. BMC Cancer (2005) 2.06
Phosphorylation of histone H4 Ser1 regulates sporulation in yeast and is conserved in fly and mouse spermatogenesis. Genes Dev (2006) 2.05
Moesin and its activating kinase Slik are required for cortical stability and microtubule organization in mitotic cells. J Cell Biol (2008) 2.02
MICU2, a paralog of MICU1, resides within the mitochondrial uniporter complex to regulate calcium handling. PLoS One (2013) 1.99
Discovery of β-arrestin-biased dopamine D2 ligands for probing signal transduction pathways essential for antipsychotic efficacy. Proc Natl Acad Sci U S A (2011) 1.98
High incidence of epithelial cancers in mice deficient for DNA polymerase delta proofreading. Proc Natl Acad Sci U S A (2002) 1.95
Discovery of a 2,4-diamino-7-aminoalkoxyquinazoline as a potent and selective inhibitor of histone lysine methyltransferase G9a. J Med Chem (2009) 1.92
Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis. Proc Natl Acad Sci U S A (2002) 1.81
Increasing hyperpolarized spin lifetimes through true singlet eigenstates. Science (2009) 1.76
A role for very-long-chain fatty acids in furrow ingression during cytokinesis in Drosophila spermatocytes. Curr Biol (2008) 1.75
17beta-estradiol reduces cardiomyocyte apoptosis in vivo and in vitro via activation of phospho-inositide-3 kinase/Akt signaling. Circ Res (2004) 1.74
Multipath estimation in urban environments from joint GNSS receivers and LiDAR sensors. Sensors (Basel) (2012) 1.74
Design and evaluation of sifuvirtide, a novel HIV-1 fusion inhibitor. J Biol Chem (2008) 1.74
Impaired heart contractility in Apelin gene-deficient mice associated with aging and pressure overload. Circ Res (2007) 1.74
A misexpression screen reveals effects of bag-of-marbles and TGF beta class signaling on the Drosophila male germ-line stem cell lineage. Genetics (2004) 1.74
Maximal induction of a subset of interferon target genes requires the chromatin-remodeling activity of the BAF complex. Mol Cell Biol (2002) 1.73
3-Methoxy-4-(4-nitro-benz-yloxy)-benzaldehyde. Acta Crystallogr Sect E Struct Rep Online (2008) 1.73
Protein lysine methyltransferase G9a inhibitors: design, synthesis, and structure activity relationships of 2,4-diamino-7-aminoalkoxy-quinazolines. J Med Chem (2010) 1.73
Signaling from germ cells mediated by the rhomboid homolog stet organizes encapsulation by somatic support cells. Development (2002) 1.70
Signaling in stem cell niches: lessons from the Drosophila germline. J Cell Sci (2005) 1.69
Influenza-associated mortality in temperate and subtropical Chinese cities, 2003-2008. Bull World Health Organ (2012) 1.69
Parallels between global transcriptional programs of polarizing Caco-2 intestinal epithelial cells in vitro and gene expression programs in normal colon and colon cancer. Mol Biol Cell (2007) 1.69
Regulatory T cells protect mice against coxsackievirus-induced myocarditis through the transforming growth factor beta-coxsackie-adenovirus receptor pathway. Circulation (2010) 1.66
A germline-specific gap junction protein required for survival of differentiating early germ cells. Development (2002) 1.66
The chromatin-remodeling BAF complex mediates cellular antiviral activities by promoter priming. Mol Cell Biol (2004) 1.64
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Cell Res (2010) 1.64
Gene expression patterns in pancreatic tumors, cells and tissues. PLoS One (2007) 1.61
Array-based comparative genomic hybridization reveals recurrent chromosomal aberrations and Jab1 as a potential target for 8q gain in hepatocellular carcinoma. Carcinogenesis (2005) 1.59
Yes-associated protein up-regulates Jagged-1 and activates the Notch pathway in human hepatocellular carcinoma. Gastroenterology (2013) 1.58
Investigating the hydrogen-bonding model of urea denaturation. J Am Chem Soc (2009) 1.57
A non-cell autonomous role of E(z) to prevent germ cells from turning on a somatic cell marker. Science (2014) 1.55
Germline stem cells. Cold Spring Harb Perspect Biol (2011) 1.53
Stepwise linear approach to catheter ablation of atrial fibrillation. Heart Rhythm (2007) 1.52
IL-33 facilitates oncogene-induced cholangiocarcinoma in mice by an interleukin-6-sensitive mechanism. Hepatology (2015) 1.52
kin-19/casein kinase Iα has dual functions in regulating asymmetric division and terminal differentiation in C. elegans epidermal stem cells. Cell Cycle (2010) 1.49
FragAnchor: a large-scale predictor of glycosylphosphatidylinositol anchors in eukaryote protein sequences by qualitative scoring. Genomics Proteomics Bioinformatics (2007) 1.49
Microprocessor, Setx, Xrn2, and Rrp6 co-operate to induce premature termination of transcription by RNAPII. Cell (2012) 1.49
Genetic dissection of meiotic cytokinesis in Drosophila males. Mol Biol Cell (2004) 1.49
Prevalence and trend of hepatitis C virus infection among blood donors in Chinese mainland: a systematic review and meta-analysis. BMC Infect Dis (2011) 1.48
Cardioprotection induced by hydrogen sulfide preconditioning involves activation of ERK and PI3K/Akt pathways. Pflugers Arch (2007) 1.48
Asymmetric centrosome behavior and the mechanisms of stem cell division. J Cell Biol (2008) 1.48
Fluoxetine synergys with anticancer drugs to overcome multidrug resistance in breast cancer cells. Tumour Biol (2012) 1.47
Optimization of cellular activity of G9a inhibitors 7-aminoalkoxy-quinazolines. J Med Chem (2011) 1.46
The Drosophila Cog5 homologue is required for cytokinesis, cell elongation, and assembly of specialized Golgi architecture during spermatogenesis. Mol Biol Cell (2003) 1.46
Belle is a Drosophila DEAD-box protein required for viability and in the germ line. Dev Biol (2005) 1.45
E-cadherin is required for centrosome and spindle orientation in Drosophila male germline stem cells. PLoS One (2010) 1.43
Development of regulatory T cells requires IL-7Ralpha stimulation by IL-7 or TSLP. Blood (2008) 1.43
Radiogenomic analysis to identify imaging phenotypes associated with drug response gene expression programs in hepatocellular carcinoma. J Vasc Interv Radiol (2007) 1.42
Decrease of plasma N-terminal pro beta-type natriuretic peptide as a predictor of clinical improvement after cardiac resynchronization therapy for heart failure. Chin Med J (Engl) (2009) 1.42
Effects of low dietary magnesium intake on development of hypertension in stroke-prone spontaneously hypertensive rats: role of reactive oxygen species. J Hypertens (2002) 1.42