Published in BMC Bioinformatics on October 25, 2004
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The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS Biol (2004) 3.33
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The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis. J Mol Biol (2003) 2.59
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics (2006) 2.53
Modeling within-motif dependence for transcription factor binding site predictions. Bioinformatics (2004) 2.29
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HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics (2004) 1.86
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Decoding human regulatory circuits. Genome Res (2004) 1.70
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Bayesian inference of spatial organizations of chromosomes. PLoS Comput Biol (2013) 1.66
A Bayesian partition method for detecting pleiotropic and epistatic eQTL modules. PLoS Comput Biol (2010) 1.66
Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. Am J Hum Genet (2004) 1.66
Statistical resynchronization and Bayesian detection of periodically expressed genes. Nucleic Acids Res (2004) 1.64
Clustering analysis of SAGE data using a Poisson approach. Genome Biol (2004) 1.58
Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis. Proc Natl Acad Sci U S A (2010) 1.56
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Gene expression profiling of human breast tissue samples using SAGE-Seq. Genome Res (2010) 1.41
Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification. J Comput Biol (2004) 1.40
Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Nat Biotechnol (2003) 1.38
Bayesian inference of protein-protein interactions from biological literature. Bioinformatics (2009) 1.35
A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res (2004) 1.29
Defining a centromere-like element in Bacillus subtilis by Identifying the binding sites for the chromosome-anchoring protein RacA. Mol Cell (2005) 1.29
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Genetic variation in XPD, sun exposure, and risk of skin cancer. Cancer Epidemiol Biomarkers Prev (2005) 1.24
RSIR: regularized sliced inverse regression for motif discovery. Bioinformatics (2005) 1.23
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol (2014) 1.22
Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms. Genome Res (2003) 1.21
Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases. Genome Res (2003) 1.20
Bayesian models for pooling microarray studies with multiple sources of replications. BMC Bioinformatics (2006) 1.14
Bayesian biclustering of gene expression data. BMC Genomics (2008) 1.14
Predicting gene expression from sequence: a reexamination. PLoS Comput Biol (2007) 1.08
MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data. Genome Biol (2011) 1.07
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On side-chain conformational entropy of proteins. PLoS Comput Biol (2006) 1.05
Detecting and understanding combinatorial mutation patterns responsible for HIV drug resistance. Proc Natl Acad Sci U S A (2010) 1.05
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinformatics (2014) 1.05
Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. Bioinformatics (2005) 1.04
Extracting sequence features to predict protein-DNA interactions: a comparative study. Nucleic Acids Res (2008) 1.04
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Monte Carlo sampling of near-native structures of proteins with applications. Proteins (2007) 1.00
Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae. Genome Biol (2006) 0.99
A coalescence-guided hierarchical Bayesian method for haplotype inference. Am J Hum Genet (2006) 0.98
CORRELATION PURSUIT: FORWARD STEPWISE VARIABLE SELECTION FOR INDEX MODELS. J R Stat Soc Series B Stat Methodol (2012) 0.96
Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo. J Chem Phys (2007) 0.94
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinformatics (2011) 0.94
Ventral midbrain correlation between genetic variation and expression of the dopamine transporter gene in cocaine-abusing versus non-abusing subjects. Addict Biol (2011) 0.94
A Bayesian method for classification of images from electron micrographs. J Struct Biol (2002) 0.92
Tmod: toolbox of motif discovery. Bioinformatics (2009) 0.91
Selective promoter recognition by chlamydial sigma28 holoenzyme. J Bacteriol (2006) 0.90
BLOCK-BASED BAYESIAN EPISTASIS ASSOCIATION MAPPING WITH APPLICATION TO WTCCC TYPE 1 DIABETES DATA. Ann Appl Stat (2011) 0.89
Molecular classification of liver cirrhosis in a rat model by proteomics and bioinformatics. Proteomics (2004) 0.89
Bayesian models for detecting epistatic interactions from genetic data. Ann Hum Genet (2010) 0.88
Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers. Bioinformatics (2013) 0.84
Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature. PLoS One (2012) 0.83
Systems-level analysis and evolution of the phototransduction network in Drosophila. Proc Natl Acad Sci U S A (2007) 0.83
A database of annotated promoters of genes associated with common respiratory and related diseases. Am J Respir Cell Mol Biol (2012) 0.81
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Rasch models of aphasic performance on syntactic comprehension tests. Cogn Neuropsychol (2010) 0.80
Bayesian functional data clustering for temporal microarray data. Int J Plant Genomics (2008) 0.80
Integrated bio-entity network: a system for biological knowledge discovery. PLoS One (2011) 0.80
Genome-wide analysis of regions similar to promoters of histone genes. BMC Syst Biol (2010) 0.79
Fast and Accurate Approximation to Significance Tests in Genome-Wide Association Studies. J Am Stat Assoc (2011) 0.78
PIMiner: a web tool for extraction of protein interactions from biomedical literature. Int J Data Min Bioinform (2013) 0.77
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinformatics (2014) 0.76
Transposon identification using profile HMMs. BMC Genomics (2010) 0.75
The emerging genomics and systems biology research lead to systems genomics studies. BMC Genomics (2014) 0.75
Erratum to: A data-adaptive Bayesian regression approach for polygenic risk prediction. Bioinformatics (2022) 0.75
Discovering herbal functional groups of traditional Chinese medicine. Stat Med (2011) 0.75