Published in Anal Chem on January 01, 2005
Dissociation of disulfide-intact somatostatin ions: the roles of ion type and dissociation method. Rapid Commun Mass Spectrom (2009) 0.96
Flexible xxx-asp/asn and gly-xxx residues of equine cytochrome C in matrix-assisted laser desorption/ionization in-source decay mass spectrometry. Mass Spectrom (Tokyo) (2012) 0.87
Cleavage of Multiple Disulfide Bonds in Insulin via Gold Cationization and Collision-induced Dissociation. Int J Mass Spectrom (2011) 0.83
MALDI-ISD Mass Spectrometry Analysis of Hemoglobin Variants: a Top-Down Approach to the Characterization of Hemoglobinopathies. J Am Soc Mass Spectrom (2015) 0.78
Matrix effect on in-source decay products of peptides in matrix-assisted laser desorption/ionization. Mass Spectrom (Tokyo) (2012) 0.78
An unusual subtilisin-like serine protease is essential for biogenesis of quinohemoprotein amine dehydrogenase. J Biol Chem (2012) 0.77
Access of hydrogen-radicals to the peptide-backbone as a measure for estimating the flexibility of proteins using matrix-assisted laser desorption/ionization mass spectrometry. Int J Mol Sci (2014) 0.77
The carboxyl-terminal amino acids render pro-human LC3B migration similar to lipidated LC3B in SDS-PAGE. PLoS One (2013) 0.76
5-nitrosalicylic Acid as a novel matrix for in-source decay in matrix-assisted laser desorption/ionization mass spectrometry. Mass Spectrom (Tokyo) (2013) 0.75
Photochemical Reactions of Aminonaphthols Caused by Laser Desorption/Ionization. Mass Spectrom (Tokyo) (2016) 0.75
In-Source Decay and Pseudo-MS(3) of Peptide and Protein Ions Using Liquid AP-MALDI. J Am Soc Mass Spectrom (2016) 0.75
MALDI In-Source Decay of Protein: The Mechanism of c-Ion Formation. Mass Spectrom (Tokyo) (2016) 0.75
In-Source Decay Characterization of Isoaspartate and β-Peptides. Int J Mass Spectrom (2015) 0.75
The hemK gene in Escherichia coli encodes the N(5)-glutamine methyltransferase that modifies peptide release factors. EMBO J (2002) 2.37
Antibodies to several citrullinated antigens are enriched in the joints of rheumatoid arthritis patients. Arthritis Rheum (2010) 2.27
ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures. Mol Cell Proteomics (2006) 2.03
De novo peptide sequencing and identification with precision mass spectrometry. J Proteome Res (2007) 1.95
Proteomics-grade de novo sequencing approach. J Proteome Res (2005) 1.76
Structure and pathogenicity of antibodies specific for citrullinated collagen type II in experimental arthritis. J Exp Med (2009) 1.68
Extent of modifications in human proteome samples and their effect on dynamic range of analysis in shotgun proteomics. Mol Cell Proteomics (2006) 1.65
Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry. Mol Cell Proteomics (2005) 1.52
Development of autoantibodies against muscle-specific FHL1 in severe inflammatory myopathies. J Clin Invest (2015) 1.51
Humoral immune response to citrullinated collagen type II determinants in early rheumatoid arthritis. Eur J Immunol (2005) 1.51
Sequence and specificity of two antibacterial proteins involved in insect immunity. Nature 292: 246-248. 1981. J Immunol (2009) 1.49
Electron capture dissociation of polypeptides in a three-dimensional quadrupole ion trap: Implementation and first results. J Am Soc Mass Spectrom (2005) 1.47
Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL. Blood (2011) 1.47
Demonstration of long-range interactions in a PDZ domain by NMR, kinetics, and protein engineering. Structure (2006) 1.41
Electron capture dissociation proceeds with a low degree of intramolecular migration of peptide amide hydrogens. J Am Chem Soc (2008) 1.40
Epitope-specific recognition of type II collagen by rheumatoid arthritis antibodies is shared with recognition by antibodies that are arthritogenic in collagen-induced arthritis in the mouse. Arthritis Rheum (2002) 1.39
Reassessing a sparse energetic network within a single protein domain. Proc Natl Acad Sci U S A (2008) 1.33
Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides. J Am Soc Mass Spectrom (2006) 1.33
Prodynorphin mutations cause the neurodegenerative disorder spinocerebellar ataxia type 23. Am J Hum Genet (2010) 1.27
New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques. Mol Cell Proteomics (2005) 1.23
C alpha-C backbone fragmentation dominates in electron detachment dissociation of gas-phase polypeptide polyanions. Chemistry (2005) 1.22
Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides. Electrophoresis (2010) 1.22
Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis. Ann Rheum Dis (2013) 1.18
Electron ionization dissociation of singly and multiply charged peptides. J Am Chem Soc (2009) 1.18
Side-chain losses in electron capture dissociation to improve peptide identification. Anal Chem (2007) 1.17
Rapid and deep human proteome analysis by single-dimension shotgun proteomics. Mol Cell Proteomics (2013) 1.16
In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models. Mol Cell Proteomics (2013) 1.14
Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins. Proc Natl Acad Sci U S A (2008) 1.10
Human ADA2 belongs to a new family of growth factors with adenosine deaminase activity. Biochem J (2005) 1.10
Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database. Anal Chem (2008) 1.10
Letter: the diagnostic value of amino acid side-chain losses in electron capture dissociation of polypeptides. Comment on: "Can the (M(.)-X) region in electron capture dissociation provide reliable information on amino acid composition of polypeptides?", Eur. J. Mass Spectrom. 8, 461-469 (2002). Eur J Mass Spectrom (Chichester, Eng) (2003) 1.08
Distinguishing of Ile/Leu amino acid residues in the PP3 protein by (hot) electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem (2003) 1.07
Facile disulfide bond cleavage in gaseous peptide and protein cations by ultraviolet photodissociation at 157 nm. Angew Chem Int Ed Engl (2005) 1.05
Complete characterization of posttranslational modification sites in the bovine milk protein PP3 by tandem mass spectrometry with electron capture dissociation as the last stage. Anal Chem (2003) 1.05
Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels. Microb Cell Fact (2013) 1.04
A sequential binding mechanism in a PDZ domain. Biochemistry (2009) 1.03
The kinetics of PDZ domain-ligand interactions and implications for the binding mechanism. J Biol Chem (2005) 1.03
MS analysis of rheumatoid arthritic synovial tissue identifies specific citrullination sites on fibrinogen. Proteomics Clin Appl (2010) 1.02
Toward proteome-scale identification and quantification of isoaspartyl residues in biological samples. J Proteome Res (2009) 1.01
Proteomic pathway analysis reveals inflammation increases myeloid-derived suppressor cell resistance to apoptosis. Mol Cell Proteomics (2010) 1.01
Electron capture dissociation distinguishes a single D-amino acid in a protein and probes the tertiary structure. J Am Soc Mass Spectrom (2004) 1.01
Two conserved residues govern the salt and pH dependencies of the binding reaction of a PDZ domain. J Biol Chem (2006) 1.00
The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins. Mol Biol Cell (2009) 0.99
Bifurcating fragmentation behavior of gas-phase tryptic peptide dications in collisional activation. J Am Soc Mass Spectrom (2008) 0.98
SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides. J Proteome Res (2007) 0.97
Chronic development of collagen-induced arthritis is associated with arthritogenic antibodies against specific epitopes on type II collagen. Arthritis Res Ther (2005) 0.96
Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations. Angew Chem Int Ed Engl (2006) 0.95
Structural basis of SUFU-GLI interaction in human Hedgehog signalling regulation. Acta Crystallogr D Biol Crystallogr (2013) 0.95
Ionization energies of multiply protonated polypeptides obtained by tandem ionization in Fourier transform mass spectrometers. J Mass Spectrom (2002) 0.94
Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography. PLoS One (2013) 0.93
On studying protein phosphorylation patterns using bottom-up LC-MS/MS: the case of human alpha-casein. Analyst (2007) 0.92
PhosTShunter: a fast and reliable tool to detect phosphorylated peptides in liquid chromatography Fourier transform tandem mass spectrometry data sets. J Proteome Res (2006) 0.92
Association between protein tyrosine phosphatase 22 variant R620W in conjunction with the HLA-DRB1 shared epitope and humoral autoimmunity to an immunodominant epitope of cartilage-specific type II collagen in early rheumatoid arthritis. Arthritis Rheum (2006) 0.91
Electron capture dissociation of weakly bound polypeptide polycationic complexes. Rapid Commun Mass Spectrom (2002) 0.90
Dissociation of peptide ions by fast atom bombardment in a quadrupole ion trap. Rapid Commun Mass Spectrom (2005) 0.89
Distinguishing and quantifying peptides and proteins containing D-amino acids by tandem mass spectrometry. Anal Chem (2005) 0.88
The transition state of coupled folding and binding for a flexible β-finger. J Mol Biol (2012) 0.88
C57BL/6 mice need MHC class II Aq to develop collagen-induced arthritis dependent on autoreactive T cells. Ann Rheum Dis (2012) 0.88
Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction. Anal Chem (2006) 0.88
Zwitterionic states in gas-phase polypeptide ions revealed by 157-nm ultra-violet photodissociation. Chemistry (2006) 0.87
Alzheimer's disease and mild cognitive impairment are associated with elevated levels of isoaspartyl residues in blood plasma proteins. J Alzheimers Dis (2011) 0.87
Immunoaffinity enrichments followed by mass spectrometric detection for studying global protein tyrosine phosphorylation. J Proteome Res (2008) 0.86
De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda. Rapid Commun Mass Spectrom (2008) 0.86
The coding ECP 434(G>C) gene polymorphism determines the cytotoxicity of ECP but has minor effects on fibroblast-mediated gel contraction and no effect on RNase activity. J Immunol (2009) 0.85
Toward a comprehensive characterization of the phosphotyrosine proteome. Cell Signal (2011) 0.85
Two dimensional mass mapping as a general method of data representation in comprehensive analysis of complex molecular mixtures. Anal Chem (2009) 0.85
Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal? J Am Soc Mass Spectrom (2011) 0.84
The human eosinophil proteome. Changes induced by birch pollen allergy. J Proteome Res (2009) 0.84
Blood plasma IgG Fc glycans are significantly altered in Alzheimer's disease and progressive mild cognitive impairment. J Alzheimers Dis (2014) 0.83
Retracted Dominant suppression of inflammation by glycan-hydrolyzed IgG. Proc Natl Acad Sci U S A (2013) 0.83
Drug target identification from protein dynamics using quantitative pathway analysis. J Proteome Res (2011) 0.83
Opposite effects of PDGF-BB and prostaglandin E1 on cell-motility related processes are paralleled by modifications of distinct actin-binding proteins. Exp Cell Res (2009) 0.83
The effects of 5-fluorouracil on the proteome of colon cancer cells. J Proteome Res (2013) 0.82
Tissue transglutaminase enhances collagen type II-induced arthritis and modifies the immunodominant T-cell epitope CII260-270. Eur J Immunol (2009) 0.82
Sequence scrambling in shotgun proteomics is negligible. J Am Soc Mass Spectrom (2011) 0.82
Tolerance of protein folding to a circular permutation in a PDZ domain. PLoS One (2012) 0.82
A direct comparison of protein structure in the gas and solution phase: the Trp-cage. J Phys Chem B (2007) 0.82
Binding of Pro-Gly-Pro at the active site of leukotriene A4 hydrolase/aminopeptidase and development of an epoxide hydrolase selective inhibitor. Proc Natl Acad Sci U S A (2014) 0.82
Electron capture dissociation of polypeptides using a 3 Tesla Fourier transform ion cyclotron resonance mass spectrometer. Rapid Commun Mass Spectrom (2002) 0.81
Selective interaction of megalin with postsynaptic density-95 (PSD-95)-like membrane-associated guanylate kinase (MAGUK) proteins. Biochem J (2003) 0.81
Empirical approach to false discovery rate estimation in shotgun proteomics. Rapid Commun Mass Spectrom (2010) 0.81
N-glycans of human protein C inhibitor: tissue-specific expression and function. PLoS One (2011) 0.80
Room-temperature infrared spectroscopy combined with mass spectrometry distinguishes gas-phase protein isomers. Angew Chem Int Ed Engl (2009) 0.80
Synthesis of cyclic beta-glucan using laminarinase 16A glycosynthase mutant from the basidiomycete Phanerochaete chrysosporium. J Am Chem Soc (2010) 0.80
High-performance liquid chromatography--mass spectrometry and electron-capture dissociation tandem mass spectrometry of osteocalcin. Determination of gamma-carboxyglutamic acid residues. J Chromatogr A (2002) 0.80
Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding. Angew Chem Int Ed Engl (2007) 0.79
N-glycans and the N terminus of protein C inhibitor affect the cofactor-enhanced rates of thrombin inhibition. J Biol Chem (2008) 0.79
Chemosensory proteins, major salivary factors in caterpillar mandibular glands. Insect Biochem Mol Biol (2012) 0.79
Separation of polypeptides by isoelectric point focusing in electrospray-friendly solution using a multiple-junction capillary fractionator. Anal Chem (2012) 0.79
Coaxial multi-electrode cell ('O-trap') for high-sensitivity detection at a multiple frequency in Fourier transform ion cyclotron resonance mass spectrometry: main design and modeling results. Rapid Commun Mass Spectrom (2006) 0.79
Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD). Rapid Commun Mass Spectrom (2014) 0.79
Characterization of an N-acylated glucagon-like peptide-1 derivative by electron capture dissociation. J Am Soc Mass Spectrom (2005) 0.78
Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation. J Proteome Res (2007) 0.78
Physicochemical properties determining the detection probability of tryptic peptides in Fourier transform mass spectrometry. A correlation study. Anal Chem (2004) 0.78
Shotgun brain proteomics reveals early molecular signature in presymptomatic mouse model of Alzheimer's disease. J Alzheimers Dis (2013) 0.78
Antianaerobic activity of a cecropin---melittin peptide. Clin Microbiol Infect (1998) 0.78
Introducing an Asp-Pro linker in the synthesis of random one-bead-one-compound hexapeptide libraries compatible with ESI-MS analysis. ACS Comb Sci (2012) 0.78
Cytotoxic and Pro-inflammatory Effects of Metal-based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches. J Proteome Res (2016) 0.78