Erick Denamur

Author PubWeight™ 123.64‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 2009 8.51
2 Stress-induced mutagenesis in bacteria. Science 2003 4.44
3 The population genetics of commensal Escherichia coli. Nat Rev Microbiol 2010 3.78
4 A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli. Mol Biol Evol 2004 3.12
5 Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains. J Antimicrob Chemother 2009 2.85
6 The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ Microbiol Rep 2012 2.84
7 The CTX-M-15-producing Escherichia coli diffusing clone belongs to a highly virulent B2 phylogenetic subgroup. J Antimicrob Chemother 2008 2.66
8 Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 2008 2.51
9 Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method. Environ Microbiol 2008 2.48
10 Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Mol Biol Evol 2007 2.44
11 Large-scale population structure of human commensal Escherichia coli isolates. Appl Environ Microbiol 2004 2.29
12 Airway fungal colonization compromises the immune system allowing bacterial pneumonia to prevail. Crit Care Med 2013 2.05
13 The evolutionary history of Shigella and enteroinvasive Escherichia coli revised. J Mol Evol 2003 1.99
14 Experimental mouse lethality of Escherichia coli isolates, in relation to accessory traits, phylogenetic group, and ecological source. J Infect Dis 2006 1.92
15 Genetic background of Escherichia coli and extended-spectrum beta-lactamase type. Emerg Infect Dis 2005 1.81
16 The enemy within us: lessons from the 2011 European Escherichia coli O104:H4 outbreak. EMBO Mol Med 2012 1.75
17 Virulence of Escherichia coli clinical isolates in a murine sepsis model in relation to sequence type ST131 status, fluoroquinolone resistance, and virulence genotype. Infect Immun 2012 1.74
18 Candida albicans impairs macrophage function and facilitates Pseudomonas aeruginosa pneumonia in rat. Crit Care Med 2009 1.68
19 Replicon typing of plasmids in Escherichia coli producing extended-spectrum beta-lactamases. J Antimicrob Chemother 2008 1.59
20 Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Environ Microbiol 2006 1.58
21 Effect of human vicinity on antimicrobial resistance and integrons in animal faecal Escherichia coli. J Antimicrob Chemother 2006 1.57
22 CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection. J Bacteriol 2011 1.54
23 The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Infect Immun 2009 1.53
24 Efficacy and toxicity of intravenous iron in a mouse model of critical care anemia*. Crit Care Med 2012 1.50
25 Analysis of virulence plasmid gene expression defines three classes of effectors in the type III secretion system of Shigella flexneri. Microbiology 2005 1.46
26 Molecular characterization of addiction systems of plasmids encoding extended-spectrum beta-lactamases in Escherichia coli. J Antimicrob Chemother 2010 1.45
27 Yersinia high-pathogenicity island contributes to virulence in Escherichia coli causing extraintestinal infections. Infect Immun 2002 1.41
28 Determination of Escherichia coli O types by allele-specific polymerase chain reaction: application to the O types involved in human septicemia. Diagn Microbiol Infect Dis 2006 1.40
29 Single-nucleotide polymorphism phylotyping of Escherichia coli. Appl Environ Microbiol 2005 1.36
30 Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species. PLoS Pathog 2009 1.35
31 Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization. J Bacteriol 2010 1.32
32 Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study. Mol Phylogenet Evol 2004 1.27
33 Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain. J Clin Microbiol 2010 1.27
34 Animal and human pathogenic Escherichia coli strains share common genetic backgrounds. Infect Genet Evol 2011 1.23
35 Integron-associated antibiotic resistance and phylogenetic grouping of Escherichia coli isolates from healthy subjects free of recent antibiotic exposure. Antimicrob Agents Chemother 2005 1.22
36 Rifampin-resistant RNA polymerase mutants of Chlamydia trachomatis remain susceptible to the ansamycin rifalazil. Antimicrob Agents Chemother 2005 1.22
37 Mutator phenotype confers advantage in Escherichia coli chronic urinary tract infection pathogenesis. FEMS Immunol Med Microbiol 2005 1.19
38 The CTX-M-15-producing Escherichia coli clone O25b: H4-ST131 has high intestine colonization and urinary tract infection abilities. PLoS One 2012 1.19
39 Evidence for a human-specific Escherichia coli clone. Environ Microbiol 2008 1.19
40 The FimH A27V mutation is pathoadaptive for urovirulence in Escherichia coli B2 phylogenetic group isolates. Infect Immun 2003 1.18
41 Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131. J Clin Microbiol 2014 1.18
42 Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog 2010 1.18
43 Core and panmetabolism in Escherichia coli. J Bacteriol 2011 1.16
44 Emergence and dissemination of extended-spectrum beta-lactamase-producing Escherichia coli in the community: lessons from the study of a remote and controlled population. J Infect Dis 2010 1.16
45 Evolutionary significance of stress-induced mutagenesis in bacteria. Trends Microbiol 2004 1.15
46 Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli. Microbes Infect 2006 1.14
47 Host factors and portal of entry outweigh bacterial determinants to predict the severity of Escherichia coli bacteremia. J Clin Microbiol 2010 1.11
48 Characterization of the cryptic Escherichia lineages: rapid identification and prevalence. Environ Microbiol 2011 1.10
49 A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7. J Bacteriol 2007 1.10
50 A carbon monoxide-releasing molecule (CORM-3) exerts bactericidal activity against Pseudomonas aeruginosa and improves survival in an animal model of bacteraemia. FASEB J 2008 1.06
51 Selection acts on DNA secondary structures to decrease transcriptional mutagenesis. PLoS Genet 2006 1.04
52 From grazing resistance to pathogenesis: the coincidental evolution of virulence factors. PLoS One 2010 1.01
53 Probable intrafamily transmission of a highly virulent CTX-M-3-producing Escherichia coli belonging to the emerging phylogenetic subgroup D2 O102-ST405 clone. J Antimicrob Chemother 2010 1.00
54 Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure. Environ Microbiol Rep 2012 1.00
55 Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species. Genome Res 2005 1.00
56 Changes in urine composition after trauma facilitate bacterial growth. BMC Infect Dis 2012 0.97
57 Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain. Antimicrob Agents Chemother 2010 0.97
58 Differential antibacterial activity against Pseudomonas aeruginosa by carbon monoxide-releasing molecules. Antioxid Redox Signal 2011 0.97
59 A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A. Antimicrob Agents Chemother 2009 0.97
60 Real-time PCR for detection of the O25b-ST131 clone of Escherichia coli and its CTX-M-15-like extended-spectrum beta-lactamases. Int J Antimicrob Agents 2010 0.95
61 Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp. Appl Environ Microbiol 2011 0.94
62 Characteristics of human intestinal Escherichia coli with changing environments. Environ Microbiol 2008 0.93
63 Influence of hydrological conditions on the Escherichia coli population structure in the water of a creek on a rural watershed. BMC Microbiol 2010 0.93
64 Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology 2012 0.92
65 Screening of Escherichia coli species biodiversity reveals new biofilm-associated antiadhesion polysaccharides. MBio 2011 0.92
66 A new family of highly variable proteins in the Chlamydophila pneumoniae genome. Nucleic Acids Res 2002 0.91
67 Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups. Appl Environ Microbiol 2013 0.90
68 Prevalence and phylogenetic history of the TcpC virulence determinant in Escherichia coli. Int J Med Microbiol 2010 0.90
69 Multiple acquisitions of CTX-M plasmids in the rare D2 genotype of Escherichia coli provide evidence for convergent evolution. Microbiology 2009 0.90
70 Bacteriophage PhiX174's ecological niche and the flexibility of its Escherichia coli lipopolysaccharide receptor. Appl Environ Microbiol 2010 0.89
71 Effects of single and multiple pathogenicity island deletions on uropathogenic Escherichia coli strain 536 intrinsic extra-intestinal virulence. Int J Med Microbiol 2010 0.89
72 Small variable segments constitute a major type of diversity of bacterial genomes at the species level. Genome Biol 2010 0.85
73 Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli. DNA Repair (Amst) 2003 0.85
74 Relative fecal abundance of extended-spectrum-β-lactamase-producing Escherichia coli strains and their occurrence in urinary tract infections in women. Antimicrob Agents Chemother 2013 0.85
75 Escherichia coli bacteremia in children: age and portal of entry are the main predictors of severity. Pediatr Infect Dis J 2014 0.84
76 Role of CD14 in responses to clinical isolates of Escherichia coli: effects of K1 capsule expression. Infect Immun 2007 0.83
77 Characterization of fecal extended-spectrum-β-lactamase-producing Escherichia coli in a remote community during a long time period. Antimicrob Agents Chemother 2013 0.82
78 Fitness, stress resistance, and extraintestinal virulence in Escherichia coli. Infect Immun 2013 0.81
79 aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species. BMC Microbiol 2009 0.81
80 Variation in endogenous oxidative stress in Escherichia coli natural isolates during growth in urine. BMC Microbiol 2012 0.81
81 The interaction between a non-pathogenic and a pathogenic strain synergistically enhances extra-intestinal virulence in Escherichia coli. Microbiology 2010 0.81
82 Integrons and antibiotic resistance in phylogenetic group B2 Escherichia coli. Microb Drug Resist 2009 0.80
83 Immunosuppressive treatment alters secretion of ileal antimicrobial peptides and gut microbiota, and favors subsequent colonization by uropathogenic Escherichia coli. Transplantation 2016 0.80
84 Pathophysiology of Escherichia coli ventilator-associated pneumonia: implication of highly virulent extraintestinal pathogenic strains. Intensive Care Med 2012 0.78
85 Complexity of Escherichia coli bacteremia pathophysiology evidenced by comparison of isolates from blood and portal of entry within single patients. Int J Med Microbiol 2013 0.78
86 Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds. Nucleic Acids Res 2011 0.78
87 WT1 splice site mutation in a 46,XX female with minimal-change nephrotic syndrome and Wilms' tumour. Nephrol Dial Transplant 2003 0.75
88 The authors reply. Crit Care Med 2014 0.75
89 Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1. Nat Microbiol 2016 0.75
90 Population Phylogenomics of Extraintestinal Pathogenic Escherichia coli. Microbiol Spectr 2016 0.75
91 Effects of Proanthocyanidins on Adhesion, Growth, and Virulence of Highly Virulent Extraintestinal Pathogenic Escherichia coli Argue for Its Use to Treat Oropharyngeal Colonization and Prevent Ventilator-Associated Pneumonia. Crit Care Med 2015 0.75
92 [Urinary tract infections in diabetic patients]. Rev Prat 2014 0.75
93 [Genetic adaptation of bacteria]. Med Sci (Paris) 2012 0.75