Published in BMC Bioinformatics on April 07, 2005
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A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Bioinformatics (2004) 1.35
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Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc Natl Acad Sci U S A (2009) 5.13
Mutant p53 disrupts mammary tissue architecture via the mevalonate pathway. Cell (2012) 4.09
Biased alternative polyadenylation in human tissues. Genome Biol (2005) 3.96
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. RNA (2005) 3.08
Reprogramming of 3' untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types. PLoS One (2009) 2.64
Characterization of the mouse IFN-lambda ligand-receptor system: IFN-lambdas exhibit antitumor activity against B16 melanoma. Cancer Res (2006) 2.34
Avibactam is a covalent, reversible, non-β-lactam β-lactamase inhibitor. Proc Natl Acad Sci U S A (2012) 2.27
PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. Nucleic Acids Res (2007) 2.22
Isolation and characterization of tumorigenic extrahepatic cholangiocarcinoma cells with stem cell-like properties. Int J Cancer (2011) 2.12
Repetitive ischemia by coronary stenosis induces a novel window of ischemic preconditioning. Circulation (2008) 2.09
PolyA_DB: a database for mammalian mRNA polyadenylation. Nucleic Acids Res (2005) 1.99
Kinetics of avibactam inhibition against Class A, C, and D β-lactamases. J Biol Chem (2013) 1.89
Design of HIV vectors for efficient gene delivery into human hematopoietic cells. Mol Ther (2002) 1.85
Prediction of mRNA polyadenylation sites by support vector machine. Bioinformatics (2006) 1.82
Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing. Nat Methods (2012) 1.80
Endogenous muscle atrophy F-box mediates pressure overload-induced cardiac hypertrophy through regulation of nuclear factor-kappaB. Circ Res (2011) 1.79
A charge-driven molecular water pump. Nat Nanotechnol (2007) 1.76
A current sensor based on the giant magnetoresistance effect: design and potential smart grid applications. Sensors (Basel) (2012) 1.74
Alternative polyadenylation of cyclooxygenase-2. Nucleic Acids Res (2005) 1.61
Distinct roles of GSK-3alpha and GSK-3beta phosphorylation in the heart under pressure overload. Proc Natl Acad Sci U S A (2008) 1.58
Role of long non-coding RNA HULC in cell proliferation, apoptosis and tumor metastasis of gastric cancer: a clinical and in vitro investigation. Oncol Rep (2013) 1.56
Loss of collectrin, an angiotensin-converting enzyme 2 homolog, uncouples endothelial nitric oxide synthase and causes hypertension and vascular dysfunction. Circulation (2013) 1.54
The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods. Nat Commun (2013) 1.50
Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Mol Cell Biol (2005) 1.50
Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells. PLoS One (2010) 1.49
A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence. EMBO J (2010) 1.49
Association between gene expression profile and tumor invasion in oral squamous cell carcinoma. Cancer Genet Cytogenet (2004) 1.45
Fc-fusion proteins: new developments and future perspectives. EMBO Mol Med (2012) 1.44
MicroRNA-17-5p promotes chemotherapeutic drug resistance and tumour metastasis of colorectal cancer by repressing PTEN expression. Oncotarget (2014) 1.44
Transcriptional activity regulates alternative cleavage and polyadenylation. Mol Syst Biol (2011) 1.41
Mediator complex regulates alternative mRNA processing via the MED23 subunit. Mol Cell (2012) 1.41
Stable liquid water droplet on a water monolayer formed at room temperature on ionic model substrates. Phys Rev Lett (2009) 1.41
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J Am Med Inform Assoc (2011) 1.40
PTEN loss increases PD-L1 protein expression and affects the correlation between PD-L1 expression and clinical parameters in colorectal cancer. PLoS One (2013) 1.39
Quantitative analysis of redox-sensitive proteome with DIGE and ICAT. J Proteome Res (2008) 1.37
Roles for the human ATP-dependent Lon protease in mitochondrial DNA maintenance. J Biol Chem (2007) 1.34
Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes. Nucleic Acids Res (2008) 1.33
STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown. Genes Dev (2013) 1.32
Increased oxidative stress in the nucleus caused by Nox4 mediates oxidation of HDAC4 and cardiac hypertrophy. Circ Res (2012) 1.30
A peptide motif consisting of glycine, alanine, and valine is required for the fibrillization and cytotoxicity of human alpha-synuclein. Biochemistry (2003) 1.30
Solid-state NMR and MD simulations of the antiviral drug amantadine solubilized in DMPC bilayers. Biophys J (2007) 1.29
Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom. BMC Bioinformatics (2009) 1.29
Loss of polyadenylation protein tauCstF-64 causes spermatogenic defects and male infertility. Proc Natl Acad Sci U S A (2007) 1.29
An intronic polyadenylation site in human and mouse CstF-77 genes suggests an evolutionarily conserved regulatory mechanism. Gene (2005) 1.24
Sex-specific regulation of gene expression in the aging monkey aorta. Physiol Genomics (2007) 1.23
Cleavage site selection within a folded substrate by the ATP-dependent lon protease. J Biol Chem (2005) 1.16
Intrinsic spin Seebeck effect in Au/YIG. Phys Rev Lett (2013) 1.15
Nuclei and subnuclei gene expression profiling in mammalian brain. Brain Res (2002) 1.15
Acute toxicity of berberine and its correlation with the blood concentration in mice. Food Chem Toxicol (2010) 1.14
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Distinctive nicotinic acetylcholine receptor functional phenotypes of rat ventral tegmental area dopaminergic neurons. J Physiol (2008) 1.14
beta-Amyloid directly inhibits human alpha4beta2-nicotinic acetylcholine receptors heterologously expressed in human SH-EP1 cells. J Biol Chem (2004) 1.14
Two gamma interferon-activated site-like elements in the human cytomegalovirus major immediate-early promoter/enhancer are important for viral replication. J Virol (2005) 1.13
A Protocol for the secure linking of registries for HPV surveillance. PLoS One (2012) 1.13
Conductometric chemical sensor based on individual CuO nanowires. Nanotechnology (2010) 1.11
Identification of differentially expressed proteins in experimental autoimmune encephalomyelitis (EAE) by proteomic analysis of the spinal cord. J Proteome Res (2007) 1.11
Analysis of RF heating and sample stability in aligned static solid-state NMR spectroscopy. J Magn Reson (2006) 1.10
A secure protocol for protecting the identity of providers when disclosing data for disease surveillance. J Am Med Inform Assoc (2011) 1.10
Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes. Biochem Soc Trans (2013) 1.10
H11 kinase/heat shock protein 22 deletion impairs both nuclear and mitochondrial functions of STAT3 and accelerates the transition into heart failure on cardiac overload. Circulation (2011) 1.09
PPARα-Sirt1 complex mediates cardiac hypertrophy and failure through suppression of the ERR transcriptional pathway. Cell Metab (2011) 1.08
Bridging small-gap peripheral nerve defects using acellular nerve allograft implanted with autologous bone marrow stromal cells in primates. Brain Res (2007) 1.08
Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays. Appl Bioinformatics (2006) 1.08
(S)-Ethyl 2-[4-(6-chloro-quinoxalin-2-yl-oxy)phen-oxy]propanoate. Acta Crystallogr Sect E Struct Rep Online (2009) 1.07
Mutual effects of Pb(II) and humic acid adsorption on multiwalled carbon nanotubes/polyacrylamide composites from aqueous solutions. Environ Sci Technol (2011) 1.07
Thioredoxin1 upregulates mitochondrial proteins related to oxidative phosphorylation and TCA cycle in the heart. Antioxid Redox Signal (2006) 1.04
Prevention of metastasis in a 4T1 murine breast cancer model by doxorubicin carried by folate conjugated pH sensitive polymeric micelles. J Control Release (2011) 1.04
Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq. Nucleic Acids Res (2012) 1.04
Roles of nicotinic acetylcholine receptor beta subunits in function of human alpha4-containing nicotinic receptors. J Physiol (2006) 1.04
Alignment of osteoblast-like cells and cell-produced collagen matrix induced by nanogrooves. Tissue Eng (2005) 1.01
Multiple frequencies sequential coding for SSVEP-based brain-computer interface. PLoS One (2012) 1.01
Glioma-initiating cells: a predominant role in microglia/macrophages tropism to glioma. J Neuroimmunol (2010) 1.01
MicroRNA-146a feedback suppresses T cell immune function by targeting Stat1 in patients with chronic hepatitis B. J Immunol (2013) 1.00
A DNA-Origami chip platform for label-free SNP genotyping using toehold-mediated strand displacement. Small (2010) 1.00
The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts. PLoS Genet (2012) 1.00
Identification of mRNA polyadenylation sites in genomes using cDNA sequences, expressed sequence tags, and Trace. Methods Mol Biol (2008) 1.00
[An analysis of resistance of nosocomial infection pathogens isolated from 13 teaching hospitals in 2011]. Zhonghua Nei Ke Za Zhi (2013) 1.00
Comparative analysis of mRNA isoform expression in cardiac hypertrophy and development reveals multiple post-transcriptional regulatory modules. PLoS One (2011) 0.99
Predicting coaxial helical stacking in RNA junctions. Nucleic Acids Res (2011) 0.99
Generating aptamers by cell-SELEX for applications in molecular medicine. Int J Mol Sci (2012) 0.99
Candida antarctica lipase B chemically immobilized on epoxy-activated micro- and nanobeads: catalysts for polyester synthesis. Biomacromolecules (2008) 0.99
Inhibition of alpha-synuclein fibrillization by dopamine analogs via reaction with the amino groups of alpha-synuclein. Implication for dopaminergic neurodegeneration. FEBS J (2005) 0.98
Positive and negative feedback loops in the p53 and mRNA 3' processing pathways. Proc Natl Acad Sci U S A (2013) 0.98
α7 nicotinic acetylcholine receptor-mediated neuroprotection against dopaminergic neuron loss in an MPTP mouse model via inhibition of astrocyte activation. J Neuroinflammation (2012) 0.98
Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells. Genome Res (2012) 0.98
Adsorption of Ni(II) on oxidized multi-walled carbon nanotubes: effect of contact time, pH, foreign ions and PAA. J Hazard Mater (2008) 0.98
A cancer-recognizable MRI contrast agents using pH-responsive polymeric micelle. Biomaterials (2013) 0.97
The evolution and expression of the snaR family of small non-coding RNAs. Nucleic Acids Res (2010) 0.97
Removal of induced nanobubbles from water/graphite interfaces by partial degassing. Langmuir (2006) 0.97
Nanoparticle PCR: nanogold-assisted PCR with enhanced specificity. Angew Chem Int Ed Engl (2005) 0.96
Moxibustion and other acupuncture point stimulation methods to treat breech presentation: a systematic review of clinical trials. Chin Med (2009) 0.96
Nanotopographical guidance of C6 glioma cell alignment and oriented growth. Biomaterials (2004) 0.96
Star-PAP control of BIK expression and apoptosis is regulated by nuclear PIPKIα and PKCδ signaling. Mol Cell (2012) 0.96
A multiplexed proteomics approach to differentiate neurite outgrowth patterns. J Neurosci Methods (2006) 0.96
Activation of the hypothalamus characterizes the response to acupuncture stimulation in heroin addicts. Neurosci Lett (2007) 0.95
Tid1, a cochaperone of the heat shock 70 protein and the mammalian counterpart of the Drosophila tumor suppressor l(2)tid, is critical for early embryonic development and cell survival. Mol Cell Biol (2004) 0.95