Published in Mol Cell on November 11, 2005
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Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis. PLoS Pathog (2015) 0.84
Poising of Escherichia coli RNA polymerase and its release from the sigma 38 C-terminal tail for osmY transcription. J Mol Biol (2008) 0.82
A model for sigma factor competition in bacterial cells. PLoS Comput Biol (2014) 0.81
Bacterial RNA polymerase can retain σ70 throughout transcription. Proc Natl Acad Sci U S A (2016) 0.81
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2. BMC Genomics (2013) 0.79
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The TFE-induced transient native-like structure of the intrinsically disordered σ₄⁷⁰ domain of Escherichia coli RNA polymerase. Eur Biophys J (2014) 0.76
σ38-dependent promoter-proximal pausing by bacterial RNA polymerase. Nucleic Acids Res (2016) 0.75
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. Mol Cell (2006) 3.46
Defining the sequence-recognition profile of DNA-binding molecules. Proc Natl Acad Sci U S A (2006) 2.97
TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II. Mol Cell (2009) 2.61
Gene loops enhance transcriptional directionality. Science (2012) 2.50
Regulator trafficking on bacterial transcription units in vivo. Mol Cell (2009) 2.43
A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell (2004) 2.27
Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex. Mol Cell Biol (2004) 2.26
Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. J Bacteriol (2005) 2.06
Chemical-genomic dissection of the CTD code. Nat Struct Mol Biol (2010) 1.76
Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis. Proc Natl Acad Sci U S A (2007) 1.71
The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. J Biol Chem (2005) 1.51
Fingers reach for the genome. Nat Biotechnol (2003) 1.48
Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli. Nucleic Acids Res (2007) 1.42
Specificity landscapes of DNA binding molecules elucidate biological function. Proc Natl Acad Sci U S A (2010) 1.39
Quantitative microarray profiling of DNA-binding molecules. J Am Chem Soc (2007) 1.30
Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination. J Biol Chem (2012) 1.30
A TAD further: exogenous control of gene activation. ACS Chem Biol (2007) 1.27
Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity. Cell Rep (2012) 1.22
Use of an electronic medical record to characterize cases of intermediate statin-induced muscle toxicity. Prev Cardiol (2009) 1.11
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin. Genes Dev (2010) 1.11
Design of artificial transcriptional activators with rigid poly-L-proline linkers. J Am Chem Soc (2002) 1.09
Automethylation of CARM1 allows coupling of transcription and mRNA splicing. Nucleic Acids Res (2010) 1.09
The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally. PLoS Genet (2013) 1.08
Emerging Views on the CTD Code. Genet Res Int (2012) 1.08
Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. Nucleic Acids Res (2009) 1.07
Hsp90 inhibitors block outgrowth of EBV-infected malignant cells in vitro and in vivo through an EBNA1-dependent mechanism. Proc Natl Acad Sci U S A (2010) 1.07
Identification of Sp2 as a transcriptional repressor of carcinoembryonic antigen-related cell adhesion molecule 1 in tumorigenesis. Cancer Res (2004) 1.06
Targeted chemical wedges reveal the role of allosteric DNA modulation in protein-DNA assembly. ACS Chem Biol (2008) 1.06
Elucidating and minimizing the loss by recombinant vaccinia virus of human immunodeficiency virus gene expression resulting from spontaneous mutations and positive selection. J Virol (2009) 1.04
Correlation of immunogenicities and in vitro expression levels of recombinant modified vaccinia virus Ankara HIV vaccines. Vaccine (2007) 1.04
Toward artificial developmental regulators. J Am Chem Soc (2003) 1.02
The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication. PLoS Genet (2009) 0.98
RNA sequences that work as transcriptional activating regions. Nucleic Acids Res (2003) 0.97
Minimization of a protein-DNA dimerizer. J Am Chem Soc (2007) 0.97
The epitope for the polyol-responsive monoclonal antibody 8RB13 is in the flap-domain of the beta-subunit of bacterial RNA polymerase and can be used as an epitope tag for immunoaffinity chromatography. Protein Expr Purif (2011) 0.96
CSI-FID: high throughput label-free detection of DNA binding molecules. Bioorg Med Chem Lett (2009) 0.96
Jarid2 (Jumonji, AT rich interactive domain 2) regulates NOTCH1 expression via histone modification in the developing heart. J Biol Chem (2011) 0.96
Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB. J Biol Chem (2009) 0.93
Expression and purification of full-length mouse CARM1 from transiently transfected HEK293T cells using HaloTag technology. Protein Expr Purif (2010) 0.93
Temperature-sensitive protein-DNA dimerizers. Proc Natl Acad Sci U S A (2005) 0.92
A target essential for the activity of a nonacidic yeast transcriptional activator. Proc Natl Acad Sci U S A (2002) 0.91
Interactions of Sen1, Nrd1, and Nab3 with multiple phosphorylated forms of the Rpb1 C-terminal domain in Saccharomyces cerevisiae. Eukaryot Cell (2012) 0.90
Expression and purification of a single-chain variable fragment antibody derived from a polyol-responsive monoclonal antibody. Protein Expr Purif (2005) 0.90
Key features of σS required for specific recognition by Crl, a transcription factor promoting assembly of RNA polymerase holoenzyme. Proc Natl Acad Sci U S A (2013) 0.89
A fast Western blot procedure improved for quantitative analysis by direct fluorescence labeling of primary antibodies. J Immunol Methods (2003) 0.89
Sequence-specificity and energy landscapes of DNA-binding molecules. Methods Enzymol (2011) 0.89
Luminescence resonance energy transfer-based high-throughput screening assay for inhibitors of essential protein-protein interactions in bacterial RNA polymerase. Appl Environ Microbiol (2003) 0.88
CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data. Nucleic Acids Res (2008) 0.88
Expression, purification of, and monoclonal antibodies to sigma factors from Escherichia coli. Methods Enzymol (2003) 0.88
Identification, production, and use of polyol-responsive monoclonal antibodies for immunoaffinity chromatography. Methods Enzymol (2009) 0.87
Comparative immunogenicity in rhesus monkeys of multi-protein HIV-1 (CRF02_AG) DNA/MVA vaccines expressing mature and immature VLPs. Virology (2005) 0.87
A cross-reactive polyol-responsive monoclonal antibody useful for isolation of core RNA polymerase from many bacterial species. Protein Expr Purif (2003) 0.87
Chemical biology: A Notch above other inhibitors. Nature (2009) 0.87
Conformational flexibility in sigma70 region 2 during transcription initiation. J Biol Chem (2002) 0.87
Overproduction in Escherichia coli and purification of Epstein-Barr virus EBNA-1. Protein Expr Purif (2005) 0.86
Studying the salt dependence of the binding of sigma70 and sigma32 to core RNA polymerase using luminescence resonance energy transfer. PLoS One (2009) 0.86
Phosphorylation sites of Epstein-Barr virus EBNA1 regulate its function. J Gen Virol (2009) 0.86
Cognate Site Identifier analysis reveals novel binding properties of the Sex Inducer homeodomain proteins of Cryptococcus neoformans. Mol Microbiol (2009) 0.84
Mapping E. coli RNA polymerase and associated transcription factors and identifying promoters genome-wide. Methods Enzymol (2011) 0.83
An epitope tag derived from human transcription factor IIB that reacts with a polyol-responsive monoclonal antibody. Protein Expr Purif (2004) 0.83
Determining DNA sequence specificity of natural and artificial transcription factors by cognate site identifier analysis. Methods Mol Biol (2009) 0.83
E. coli expression of a soluble, active single-chain antibody variable fragment containing a nuclear localization signal. Protein Expr Purif (2009) 0.83
Development of an epitope tag for the gentle purification of proteins by immunoaffinity chromatography: application to epitope-tagged green fluorescent protein. Anal Biochem (2003) 0.83
Expanding the specificity of DNA targeting by harnessing cooperative assembly. Biochimie (2008) 0.83
Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding. J Bacteriol (2002) 0.82
Immunoaffinity purification and characterization of RNA polymerase from Shewanella oneidensis. Protein Expr Purif (2007) 0.82
Mapping polyamide-DNA interactions in human cells reveals a new design strategy for effective targeting of genomic sites. Angew Chem Int Ed Engl (2014) 0.82
Antigen-binding properties of monoclonal antibodies reactive with EBNA1 and use in immunoaffinity chromatography. PLoS One (2009) 0.81
Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine. Lab Chip (2011) 0.80
Nucleating the assembly of macromolecular complexes. Chembiochem (2010) 0.80
Expression, purification, and refolding of active Nrf2 transcription factor fused to protein transduction TAT tag. Protein Expr Purif (2010) 0.80
Unraveling the mechanism of a potent transcriptional activator. J Biol Chem (2005) 0.80
LRET-based HTS of a small-compound library for inhibitors of bacterial RNA polymerase. Assay Drug Dev Technol (2007) 0.80
Small-molecule regulators that mimic transcription factors. Biochim Biophys Acta (2010) 0.80
Controlling gene networks and cell fate with precision-targeted DNA-binding proteins and small-molecule-based genome readers. Biochem J (2014) 0.78
Converting inactive peptides into potent transcriptional activators. ACS Chem Biol (2006) 0.78
On-column tris(2-carboxyethyl)phosphine reduction and IC5-maleimide labeling during purification of a RpoC fragment on a nickel-nitrilotriacetic acid Column. Anal Biochem (2002) 0.78
Mirtazapine and its enantiomers differentially modulate acute thermal nociception in rats. Brain Res Bull (2005) 0.77
Antigen-binding properties of monoclonal antibodies reactive with human TATA-binding protein and use in immunoaffinity chromatography. Protein Expr Purif (2004) 0.77
Studying sigma-core interactions in Escherichia coli RNA polymerase by electrophoretic shift assays and luminescence resonance energy transfer. Methods Enzymol (2003) 0.77
Large-scale Epstein-Barr virus EBNA1 protein purification. Protein Expr Purif (2008) 0.76
Production and characterization of monoclonal antibodies to estrogen-related receptor alpha (ERRα) and use in immunoaffinity chromatography. Protein Expr Purif (2012) 0.75
An improved procedure for the purification of the Escherichia coli RNA polymerase omega subunit. Protein Expr Purif (2009) 0.75
Har Gobind Khorana 1922-2011. Cell (2011) 0.75
Identification and characterization of the gene encoding the Acidobacterium capsulatum major sigma factor. Gene (2006) 0.75
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Purification of protein complexes by immunoaffinity chromatography: application to transcription machinery. Genet Eng (N Y) (2006) 0.75
In memoriam: recollections of John Dunn (1944-2012). Protein Expr Purif (2013) 0.75
Fusion tags: a collection of papers. Protein Expr Purif (2011) 0.75
On the passing of Gerald C. Mueller, MD, PhD (1920–2010). Cancer Res (2011) 0.75
Artifact-inducing enrichment of ethylenediaminetetraacetic acid and ethyleneglycoltetraacetic acid on anion exchange resins. Anal Biochem (2011) 0.75