PubRank

Yunping Zhu

Author PubWeight™ 70.31‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008 4.21
2 Identification of genetic variants in base excision repair pathway and their associations with risk of esophageal squamous cell carcinoma. Cancer Res 2004 1.64
3 Proteome analysis of hepatocellular carcinoma by two-dimensional difference gel electrophoresis: novel protein markers in hepatocellular carcinoma tissues. Mol Cell Proteomics 2007 1.57
4 Toward an understanding of the protein interaction network of the human liver. Mol Syst Biol 2011 1.24
5 Dose tolerance limits and dose volume histogram evaluation for stereotactic body radiotherapy. J Appl Clin Med Phys 2011 1.22
6 PRINCESS, a protein interaction confidence evaluation system with multiple data sources. Mol Cell Proteomics 2008 1.12
7 PACT is a negative regulator of p53 and essential for cell growth and embryonic development. Proc Natl Acad Sci U S A 2007 1.12
8 Characterization of a novel C-type lectin-like gene, LSECtin: demonstration of carbohydrate binding and expression in sinusoidal endothelial cells of liver and lymph node. J Biol Chem 2004 1.10
9 Association between mannose-binding lectin gene polymorphisms and susceptibility to severe acute respiratory syndrome coronavirus infection. J Infect Dis 2005 1.09
10 Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness. Proteomics 2006 1.08
11 Multi-modality of pI distribution in whole proteome. Proteomics 2006 1.07
12 Hypofractionated stereotactic radiotherapy for the treatment of brain metastases. Cancer 2009 1.07
13 Preliminary results from a Phase II trail of conformal radiation therapy for pediatric patients with localised low-grade astrocytoma and ependymoma. Int J Radiat Oncol Biol Phys 2002 1.05
14 A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology. Mol Cell Proteomics 2006 1.04
15 Role for the pleckstrin homology domain-containing protein CKIP-1 in AP-1 regulation and apoptosis. EMBO J 2005 1.02
16 Functional proteomic analysis of nonalcoholic fatty liver disease in rat models: enoyl-coenzyme a hydratase down-regulation exacerbates hepatic steatosis. Hepatology 2010 0.99
17 Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics 2008 0.99
18 Identification, characterization, and functional study of the two novel human members of the semaphorin gene family. J Biol Chem 2002 0.99
19 Image-guided intracavitary high-dose-rate brachytherapy for cervix cancer: A single institutional experience with three-dimensional CT-based planning. Brachytherapy 2009 0.98
20 Proteome-wide prediction of signal flow direction in protein interaction networks based on interacting domains. Mol Cell Proteomics 2009 0.97
21 Liverbase: a comprehensive view of human liver biology. J Proteome Res 2010 0.96
22 A new strategy to filter out false positive identifications of peptides in SEQUEST database search results. Proteomics 2007 0.95
23 Identification of metastasis-associated proteins by proteomic analysis and functional exploration of interleukin-18 in metastasis. Proteomics 2003 0.94
24 The G-113A polymorphism in CYP1A2 affects the caffeine metabolic ratio in a Chinese population. Clin Pharmacol Ther 2005 0.93
25 SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. Bioinformatics 2013 0.93
26 Quantitative proteome analysis of HCC cell lines with different metastatic potentials by SILAC. Proteomics 2008 0.93
27 PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics. Proteomics 2012 0.93
28 A systems biology-based classifier for hepatocellular carcinoma diagnosis. PLoS One 2011 0.90
29 The potentiation role of hepatopoietin on activator protein-1 is dependent on its sulfhydryl oxidase activity. J Biol Chem 2003 0.89
30 Haplotype structure and evidence for positive selection at the human IL13 locus. Mol Biol Evol 2003 0.89
31 Bayesian nonparametric model for the validation of peptide identification in shotgun proteomics. Mol Cell Proteomics 2008 0.89
32 Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus. Proteomics 2004 0.89
33 Macrophage migration inhibitory factor directly interacts with hepatopoietin and regulates the proliferation of hepatoma cell. Exp Cell Res 2004 0.89
34 Characterization of the liver tissue interstitial fluid (TIF) proteome indicates potential for application in liver disease biomarker discovery. J Proteome Res 2010 0.87
35 Bioinformatics analysis of proteomic profiles during the process of anti-Thy1 nephritis. Mol Cell Proteomics 2011 0.86
36 Hepatopoietin interacts directly with COP9 signalosome and regulates AP-1 activity. FEBS Lett 2004 0.86
37 CKIP-1 recruits nuclear ATM partially to the plasma membrane through interaction with ATM. Cell Signal 2005 0.85
38 A nonparametric model for quality control of database search results in shotgun proteomics. BMC Bioinformatics 2008 0.84
39 Improving X!Tandem on peptide identification from mass spectrometry by self-boosted Percolator. IEEE/ACM Trans Comput Biol Bioinform 2012 0.83
40 Verification of multileaf collimator leaf positions using an electronic portal imaging device. Med Phys 2002 0.83
41 Association of CYP1A2 genetic polymorphisms with hepatocellular carcinoma susceptibility: a case-control study in a high-risk region of China. Pharmacogenet Genomics 2006 0.83
42 Protein probabilities in shotgun proteomics: evaluating different estimation methods using a semi-random sampling model. Proteomics 2006 0.83
43 LiverAtlas: a unique integrated knowledge database for systems-level research of liver and hepatic disease. Liver Int 2013 0.82
44 Mass measurement errors of Fourier-transform mass spectrometry (FTMS): distribution, recalibration, and application. J Proteome Res 2009 0.82
45 Comparison of two algorithms for determining beam weights and wedge filters. J Appl Clin Med Phys 2002 0.82
46 Characterization of Ceap-11 and Ceap-16, two novel splicing-variant-proteins, associated with centrosome, microtubule aggregation and cell proliferation. J Mol Biol 2004 0.81
47 Omics evidence: single nucleotide variants transmissions on chromosome 20 in liver cancer cell lines. J Proteome Res 2013 0.81
48 Modified spectral count index (mSCI) for estimation of protein abundance by protein relative identification possibility (RIPpro): a new proteomic technological parameter. J Proteome Res 2009 0.81
49 Direct association of hepatopoietin with thioredoxin constitutes a redox signal transduction in activation of AP-1/NF-kappaB. Cell Signal 2004 0.81
50 Quantitative proteomic survey of endoplasmic reticulum in mouse liver. J Proteome Res 2010 0.81
51 Computational identification of rare codons of Escherichia coli based on codon pairs preference. BMC Bioinformatics 2010 0.80
52 An initiator and its flanking elements function as a core promoter driving transcription of the Hepatopoietin gene. FEBS Lett 2003 0.80
53 Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric model. Proteomics 2010 0.80
54 A quality assurance method with submillimeter accuracy for stereotactic linear accelerators. J Appl Clin Med Phys 2010 0.80
55 Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs. BMC Evol Biol 2011 0.80
56 Qualitative and quantitative analysis of the adult Drosophila melanogaster proteome. Proteomics 2014 0.80
57 First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon. J Proteome Res 2012 0.79
58 Inflammation inhibitors were remarkably up-regulated in plasma of severe acute respiratory syndrome patients at progressive phase. Proteomics 2006 0.79
59 SigFlux: a novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinformatics 2006 0.79
60 Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP. J Proteome Res 2013 0.79
61 Systematic research on the pretreatment of peptides for quantitative proteomics using a C₁₈ microcolumn. Proteomics 2013 0.79
62 Regular patterns for proteome-wide distribution of protein abundance across species. PLoS One 2012 0.78
63 ProPAS: standalone software to analyze protein properties. Bioinformation 2012 0.78
64 Relationship between sample loading amount and peptide identification and its effects on quantitative proteomics. Anal Chem 2009 0.78
65 LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data. Proteomics 2012 0.78
66 Dose reconstruction for intensity-modulated radiation therapy using a non-iterative method and portal dose image. Phys Med Biol 2009 0.78
67 Radiation treatment for medulloblastoma: a review of 64 cases at a single institute. Jpn J Clin Oncol 2005 0.77
68 A systematic N-terminal peptide quantitative labeling strategy for differential proteomic analysis. Proteomics Clin Appl 2010 0.77
69 Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines. J Proteome Res 2012 0.77
70 Modular analysis of the probabilistic genetic interaction network. Bioinformatics 2011 0.77
71 Reconstruction of signaling network from protein interactions based on function annotations. IEEE/ACM Trans Comput Biol Bioinform 2013 0.77
72 Systematic analysis of missing proteins provides clues to help define all of the protein-coding genes on human chromosome 1. J Proteome Res 2013 0.77
73 CD247 can bind SHC1, no matter if CD247 is phosphorylated. J Mol Recognit 2009 0.76
74 Comparison and evaluation of network clustering algorithms applied to genetic interaction networks. Front Biosci (Elite Ed) 2012 0.76
75 Proteome atlas of human chromosome 8 and its multiple 8p deficiencies in tumorigenesis of the stomach, colon, and liver. J Proteome Res 2012 0.76
76 A novel parametric approach to mine gene regulatory relationship from microarray datasets. BMC Bioinformatics 2010 0.75
77 Bioinformatics analyses for signal transduction networks. Sci China C Life Sci 2008 0.75
78 Conversion of dose-volume constraints to dose limits. Phys Med Biol 2003 0.75
79 Transglycosylation reaction of xylanase B from the hyperthermophilic Thermotoga maritima with the ability of synthesis of tertiary alkyl beta-D-xylobiosides and xylosides. J Biotechnol 2004 0.75
80 A typical endo-xylanase from Streptomyces rameus L2001 and its unique characteristics in xylooligosaccharide production. Carbohydr Res 2012 0.75
81 [Applications of meta-analysis in multi-omics]. Sheng Wu Gong Cheng Xue Bao 2014 0.75
82 FTDR 2.0: a tool to achieve sub-ppm level recalibrated accuracy in routine LC-MS analysis. J Proteome Res 2013 0.75
83 Information engineering infrastructure for life sciences and its implementation in China. Sci China Life Sci 2013 0.75
84 [Progress in proteogenomics of prokaryotes]. Sheng Wu Gong Cheng Xue Bao 2014 0.75
85 A new insight into the impact of different proteases on SILAC quantitative proteome of the mouse liver. Proteomics 2013 0.75