Published in Genome Res on March 01, 2006
Reconstructing contiguous regions of an ancestral genome. Genome Res (2006) 3.68
Breakpoint graphs and ancestral genome reconstructions. Genome Res (2009) 2.78
The genome diversity and karyotype evolution of mammals. Mol Cytogenet (2011) 2.35
DUPCAR: reconstructing contiguous ancestral regions with duplications. J Comput Biol (2008) 1.50
Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution. BMC Evol Biol (2009) 1.40
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction. Genome Res (2006) 1.22
A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes. PLoS Comput Biol (2008) 1.15
Recovering genome rearrangements in the mammalian phylogeny. Genome Res (2009) 1.14
Molecular cytogenetic and genomic insights into chromosomal evolution. Heredity (Edinb) (2011) 1.01
Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution. BMC Genomics (2012) 0.95
Karyotype evolution and phylogenetic relationships of hamsters (Cricetidae, Muroidea, Rodentia) inferred from chromosomal painting and banding comparison. Chromosome Res (2007) 0.94
Chromosome painting in the manatee supports Afrotheria and Paenungulata. BMC Evol Biol (2007) 0.92
Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila. Genetics (2006) 0.91
Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages. Chromosome Res (2009) 0.90
Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies. BMC Evol Biol (2007) 0.89
Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla ancestral karyotype. Chromosome Res (2007) 0.87
Divergent patterns of breakpoint reuse in Muroid rodents. Mamm Genome (2009) 0.85
Tracking genome organization in rodents by Zoo-FISH. Chromosome Res (2008) 0.84
Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting). Chromosome Res (2007) 0.83
Mapping ancestral genomes with massive gene loss: a matrix sandwich problem. Bioinformatics (2011) 0.83
Defining the ancestral eutherian karyotype: a cladistic interpretation of chromosome painting and genome sequence assembly data. Chromosome Res (2008) 0.81
Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting. Chromosome Res (2011) 0.81
Reconstruction of the ancestral marsupial karyotype from comparative gene maps. BMC Evol Biol (2013) 0.80
Assessing the role of tandem repeats in shaping the genomic architecture of great apes. PLoS One (2011) 0.79
Addressing chromosome evolution in the whole-genome sequence era. Chromosome Res (2008) 0.79
Reconstruction and evolutionary history of eutherian chromosomes. Proc Natl Acad Sci U S A (2017) 0.76
Mammalian Comparative Genomics Reveals Genetic and Epigenetic Features Associated with Genome Reshuffling in Rodentia. Genome Biol Evol (2016) 0.75
Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus. Mol Genet Genomics (2016) 0.75
Intrachromosomal Rearrangements in Rodents from the Perspective of Comparative Region-Specific Painting. Genes (Basel) (2017) 0.75
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature (2004) 21.40
An overview of Ensembl. Genome Res (2004) 10.35
Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res (2002) 5.19
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. Proc Natl Acad Sci U S A (2003) 4.54
Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes. Genome Res (2004) 2.94
Hotspots of mammalian chromosomal evolution. Genome Biol (2004) 2.92
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Res (2004) 2.17
A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Mol Phylogenet Evol (2003) 2.15
Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes. Proc Natl Acad Sci U S A (2005) 1.88
Chromosomal phylogeny and evolution of gibbons (Hylobatidae). Hum Genet (2003) 1.79
Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype. Proc Natl Acad Sci U S A (2003) 1.79
Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH. Genome Res (1998) 1.71
The evolution of eutherian chromosomes. Curr Opin Genet Dev (2004) 1.51
Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat Genet (1994) 1.49
Molecular cytotaxonomy of primates by chromosomal in situ suppression hybridization. Genomics (1990) 1.32
Cytogenetics and cladistics. Syst Biol (2004) 1.20
Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. Proc Biol Sci (2004) 1.13
Origins of primate chromosomes - as delineated by Zoo-FISH and alignments of human and mouse draft genome sequences. Cytogenet Genome Res (2005) 1.12
Report of the committee on comparative gene mapping. Cytogenet Cell Genet (1990) 1.10
Reciprocal chromosome painting shows that genomic rearrangement between rat and mouse proceeds ten times faster than between humans and cats. Cytogenet Cell Genet (1999) 1.05
Reconstruction of the ancestral karyotype of eutherian mammals. Chromosome Res (2003) 1.02
The origin of human chromosome 1 and its homologs in placental mammals. Genome Res (2003) 0.97
A chromosome painting test of the basal eutherian karyotype. Chromosome Res (2004) 0.97
Rat-mouse and rat-human comparative maps based on gene homology and high-resolution zoo-FISH. Genomics (2001) 0.94
Evolution of genome organizations of squirrels (Sciuridae) revealed by cross-species chromosome painting. Chromosome Res (2004) 0.90
Evolutionary conserved chromosomal segments in the human karyotype are bounded by unstable chromosome bands. Cytogenet Genome Res (2005) 0.87
Global variation in copy number in the human genome. Nature (2006) 57.50
Paired-end mapping reveals extensive structural variation in the human genome. Science (2007) 30.46
Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell (2011) 16.72
Signatures of mutation and selection in the cancer genome. Nature (2010) 9.75
The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science (2011) 8.23
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol (2005) 4.33
Chromosome territories--a functional nuclear landscape. Curr Opin Cell Biol (2006) 3.82
Members of the PIAS family act as SUMO ligases for c-Jun and p53 and repress p53 activity. Proc Natl Acad Sci U S A (2002) 2.85
HdmX stimulates Hdm2-mediated ubiquitination and degradation of p53. Proc Natl Acad Sci U S A (2003) 2.73
Copy number variation and evolution in humans and chimpanzees. Genome Res (2008) 2.69
Radioembolization with yttrium-90 glass microspheres in hepatocellular carcinoma: European experience on safety and long-term survival. Hepatology (2010) 2.60
Adaptive evolution of UGT2B17 copy-number variation. Am J Hum Genet (2008) 2.58
The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase. EMBO J (2002) 2.56
Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates. Proc Natl Acad Sci U S A (2002) 2.53
Plastin 3 is a protective modifier of autosomal recessive spinal muscular atrophy. Science (2008) 2.51
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell (2012) 2.37
Dipeptidyl peptidase 4 is a novel adipokine potentially linking obesity to the metabolic syndrome. Diabetes (2011) 2.29
Male mouse recombination maps for each autosome identified by chromosome painting. Am J Hum Genet (2002) 2.00
Strumpellin is a novel valosin-containing protein binding partner linking hereditary spastic paraplegia to protein aggregation diseases. Brain (2010) 1.93
Estimation of rearrangement phylogeny for cancer genomes. Genome Res (2011) 1.91
A high utility integrated map of the pig genome. Genome Biol (2007) 1.88
Cellular targets of gefitinib. Cancer Res (2005) 1.87
Chromosomal phylogeny and evolution of gibbons (Hylobatidae). Hum Genet (2003) 1.79
A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene. Syst Biol (2004) 1.79
The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Development (2006) 1.74
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks. Bioinformatics (2006) 1.61
Small supernumerary marker chromosomes (SMCs): genotype-phenotype correlation and classification. Hum Genet (2003) 1.57
Is mammalian chromosomal evolution driven by regions of genome fragility? Genome Biol (2006) 1.54
Characterization of peptides released from mitochondria: evidence for constant proteolysis and peptide efflux. J Biol Chem (2004) 1.53
Multicolor 3D fluorescence in situ hybridization for imaging interphase chromosomes. Methods Mol Biol (2008) 1.52
Cross-species chromosome painting unveils cytogenetic signatures for the Eulipotyphla and evidence for the polyphyly of Insectivora. Chromosome Res (2006) 1.49
Definition of the zebrafish genome using flow cytometry and cytogenetic mapping. BMC Genomics (2007) 1.46
Subinhibitory concentrations of linezolid reduce Staphylococcus aureus virulence factor expression. Antimicrob Agents Chemother (2004) 1.43
Genetic basis of Y-linked hearing impairment. Am J Hum Genet (2013) 1.42
Implantation of artificial penile nodules--a review of literature. J Sex Med (2010) 1.41
Hemiplasy: a new term in the lexicon of phylogenetics. Syst Biol (2008) 1.34
Structural characterization of TSC-36/Flik: analysis of two charge isoforms. J Biol Chem (2003) 1.33
Early embryonic chromosome instability results in stable mosaic pattern in human tissues. PLoS One (2010) 1.32
Synergy of glucose and growth hormone signalling in islet cells through ICA512 and STAT5. Nat Cell Biol (2006) 1.31
Cytidine monophospho-N-acetylneuraminic acid hydroxylase (CMAH) mutations associated with the domestic cat AB blood group. BMC Genet (2007) 1.28
The ascent of cat breeds: genetic evaluations of breeds and worldwide random-bred populations. Genomics (2007) 1.28
Chemical proteomic analysis reveals alternative modes of action for pyrido[2,3-d]pyrimidine kinase inhibitors. Mol Cell Proteomics (2004) 1.28
Flow-structure-acoustic interaction in a human voice model. J Acoust Soc Am (2009) 1.27
Acquisition protocol considerations for combined PET/CT imaging. J Nucl Med (2004) 1.27
Interaction of G alpha(12) with G alpha(13) and G alpha(q) signaling pathways. Proc Natl Acad Sci U S A (2002) 1.27
Proteomic characterization of the angiogenesis inhibitor SU6668 reveals multiple impacts on cellular kinase signaling. Cancer Res (2005) 1.21
Induction of Bim and Bid gene expression during accelerated apoptosis in severe sepsis. Crit Care (2008) 1.21
Viral oncoproteins E1A and E7 and cellular LxCxE proteins repress SUMO modification of the retinoblastoma tumor suppressor. Oncogene (2005) 1.21
What is an "adverse" environment? Interactions of rearing experiences and MAOA genotype in rhesus monkeys. Biol Psychiatry (2008) 1.21
Cytogenetics and cladistics. Syst Biol (2004) 1.20
Homologous sequences at human chromosome 9 bands p12 and q13-21.1 are involved in different patterns of pericentric rearrangements. Eur J Hum Genet (2002) 1.19
Molecular characterization of the pericentric inversion that causes differences between chimpanzee chromosome 19 and human chromosome 17. Am J Hum Genet (2002) 1.19
Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions. Genome Res (2008) 1.16
Sumoylation of poly(ADP-ribose) polymerase 1 inhibits its acetylation and restrains transcriptional coactivator function. FASEB J (2009) 1.15
Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla. Chromosome Res (2008) 1.14
A high-resolution map of synteny disruptions in gibbon and human genomes. PLoS Genet (2006) 1.13
Evolutionarily conserved, cell type and species-specific higher order chromatin arrangements in interphase nuclei of primates. Chromosoma (2007) 1.13
Nuclear translocation of an ICA512 cytosolic fragment couples granule exocytosis and insulin expression in {beta}-cells. J Cell Biol (2004) 1.12
Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Plant Physiol (2009) 1.10
Feline lymphoma in the post-feline leukemia virus era. J Vet Intern Med (2005) 1.10
Massively parallel sequencing reveals the complex structure of an irradiated human chromosome on a mouse background in the Tc1 model of Down syndrome. PLoS One (2013) 1.10
Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes). Hum Mutat (2005) 1.10
Identification and validation of novel adipokines released from primary human adipocytes. Mol Cell Proteomics (2011) 1.10
The naked truth: Sphynx and Devon Rex cat breed mutations in KRT71. Mamm Genome (2010) 1.09
Chromosome reshuffling in birds of prey: the karyotype of the world's largest eagle (Harpy eagle, Harpia harpyja) compared to that of the chicken (Gallus gallus). Chromosoma (2005) 1.09
A serial lectin approach to the mucin-type O-glycoproteome of Drosophila melanogaster S2 cells. Proteomics (2007) 1.09
A high-resolution radiation hybrid map of rhesus macaque chromosome 5 identifies rearrangements in the genome assembly. Genomics (2008) 1.09
Pathogenesis of feline enteric coronavirus infection. J Feline Med Surg (2008) 1.08
Role of the novel metallopeptidase Mop112 and saccharolysin for the complete degradation of proteins residing in different subcompartments of mitochondria. J Biol Chem (2005) 1.08
Flow analysis and sorting of microchromosomes (<3 Mb). Cytometry A (2007) 1.08
Chinese hamster genome sequenced from sorted chromosomes. Nat Biotechnol (2013) 1.07
Towards the delineation of the ancestral eutherian genome organization: comparative genome maps of human and the African elephant (Loxodonta africana) generated by chromosome painting. Proc Biol Sci (2003) 1.06
Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes. Genome Biol (2008) 1.06
Comparative Mapping Using Chromosome Sorting and Painting. ILAR J (1998) 1.06
Disruption of mouse Cenpj, a regulator of centriole biogenesis, phenocopies Seckel syndrome. PLoS Genet (2012) 1.06
Evolutionary history of LINE-1 in the major clades of placental mammals. PLoS One (2007) 1.05
Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)--an atypical species with low diploid number. Chromosome Res (2009) 1.05
Allogeneic dendritic cells fused with tumor cells: preclinical results and outcome of a clinical phase I/II trial in patients with metastatic renal cell carcinoma. Hum Gene Ther (2003) 1.04
ATMIN is required for maintenance of genomic stability and suppression of B cell lymphoma. Cancer Cell (2011) 1.03
A canonical stability-elasticity relationship verified for one million face-centred-cubic structures. Nature (2012) 1.03
Phylogenomics of the genus Mus (Rodentia; Muridae): extensive genome repatterning is not restricted to the house mouse. Proc Biol Sci (2006) 1.03
Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution. Mol Phylogenet Evol (2005) 1.03
Serotonin pathway gene-gene and gene-environment interactions influence behavioral stress response in infant rhesus macaques. Dev Psychopathol (2010) 1.02
Gain of chromosome band 7q11 in papillary thyroid carcinomas of young patients is associated with exposure to low-dose irradiation. Proc Natl Acad Sci U S A (2011) 1.02
Towards unlimited colors for fluorescence in-situ hybridization (FISH). Chromosome Res (2002) 1.02
Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals. PLoS One (2011) 1.01
Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds. PLoS One (2013) 1.01
Selkirk Rex: morphological and genetic characterization of a new cat breed. J Hered (2012) 1.01
Phosphosignature predicts dasatinib response in non-small cell lung cancer. Mol Cell Proteomics (2012) 1.00
Chromosomal phylogeny of four Akodontini species (Rodentia, Cricetidae) from southern Brazil established by Zoo-FISH using Mus musculus (Muridae) painting probes. Chromosome Res (2008) 1.00
The proto-oncogene C-KIT maps to canid B-chromosomes. Chromosome Res (2005) 1.00
Autosome and sex chromosome diversity among the African pygmy mice, subgenus Nannomys (Murinae; Mus). Chromosome Res (2004) 1.00
First WNK4-hypokalemia animal model identified by genome-wide association in Burmese cats. PLoS One (2012) 0.99
Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). I. The genome homology of tundra vole, field vole, mouse and golden hamster revealed by comparative chromosome painting. Chromosome Res (2007) 0.99
Identification of large-scale human-specific copy number differences by inter-species array comparative genomic hybridization. Hum Genet (2006) 0.99