Published in Bioinformatics on July 14, 2006
Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae. BMC Bioinformatics (2006) 1.41
Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics (2008) 1.25
Integrated cellular network of transcription regulations and protein-protein interactions. BMC Syst Biol (2010) 1.20
Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. Nucleic Acids Res (2009) 1.15
Identifying gene regulatory modules of heat shock response in yeast. BMC Genomics (2008) 1.12
Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets. BMC Syst Biol (2008) 1.07
A network-based biomarker approach for molecular investigation and diagnosis of lung cancer. BMC Med Genomics (2011) 1.01
A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. BMC Syst Biol (2014) 1.00
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics (2010) 0.99
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison. BMC Bioinformatics (2010) 0.93
Topological comparison of methods for predicting transcriptional cooperativity in yeast. BMC Genomics (2008) 0.92
Identifying cooperative transcription factors in yeast using multiple data sources. BMC Syst Biol (2014) 0.87
PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast. BMC Bioinformatics (2015) 0.86
Underlying principles of natural selection in network evolution: systems biology approach. Evol Bioinform Online (2007) 0.85
Combinatorial influence of environmental parameters on transcription factor activity. Bioinformatics (2008) 0.85
A systematic approach to detecting transcription factors in response to environmental stresses. BMC Bioinformatics (2007) 0.85
Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast. BMC Genomics (2015) 0.83
Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana. BMC Bioinformatics (2011) 0.81
Reconstructing a network of stress-response regulators via dynamic system modeling of gene regulation. Gene Regul Syst Bio (2008) 0.79
Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering. Cells (2013) 0.78
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. Database (Oxford) (2016) 0.77
YCRD: Yeast Combinatorial Regulation Database. PLoS One (2016) 0.76
Nonlinear dynamic trans/cis regulatory circuit for gene transcription via microarray data. Gene Regul Syst Bio (2007) 0.75
Functional and topological characterization of transcriptional cooperativity in yeast. BMC Res Notes (2012) 0.75
Detecting Cooperativity between Transcription Factors Based on Functional Coherence and Similarity of Their Target Gene Sets. PLoS One (2016) 0.75
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol (2017) 0.75
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics (2006) 1.47
Purification and characterization of enterovirus 71 viral particles produced from vero cells grown in a serum-free microcarrier bioreactor system. PLoS One (2011) 1.45
Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle. Bioinformatics (2004) 1.43
Complete mitochondrial genomes of Taenia multiceps, T. hydatigena and T. pisiformis: additional molecular markers for a tapeworm genus of human and animal health significance. BMC Genomics (2010) 1.43
Integrated cellular network of transcription regulations and protein-protein interactions. BMC Syst Biol (2010) 1.20
Quantitative inference of dynamic regulatory pathways via microarray data. BMC Bioinformatics (2005) 1.20
A new measure of the robustness of biochemical networks. Bioinformatics (2005) 1.13
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinformatics (2007) 1.09
Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets. BMC Syst Biol (2008) 1.07
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification. BMC Bioinformatics (2005) 1.05
Thermosensitive liposomes entrapping iron oxide nanoparticles for controllable drug release. Nanotechnology (2009) 1.04
On the attenuation and amplification of molecular noise in genetic regulatory networks. BMC Bioinformatics (2006) 1.04
A network-based biomarker approach for molecular investigation and diagnosis of lung cancer. BMC Med Genomics (2011) 1.01
Clinicopathological features and prognostic factors of gastric cancer patients aged 40 years or younger. J Surg Oncol (2012) 0.97
Robust H infinity-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach. IEEE Trans Syst Man Cybern B Cybern (2008) 0.95
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison. BMC Bioinformatics (2010) 0.93
Dynamic cross-talk analysis among TNF-R, TLR-4 and IL-1R signalings in TNFalpha-induced inflammatory responses. BMC Med Genomics (2010) 0.93
Identifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses. Comp Funct Genomics (2010) 0.90
New measurement methods of network robustness and response ability via microarray data. PLoS One (2013) 0.86
YTRP: a repository for yeast transcriptional regulatory pathways. Database (Oxford) (2014) 0.85
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study. BMC Syst Biol (2013) 0.85
A systematic approach to detecting transcription factors in response to environmental stresses. BMC Bioinformatics (2007) 0.85
Identifying Stress Transcription Factors Using Gene Expression and TF-Gene Association Data. Bioinform Biol Insights (2009) 0.85
Robust model matching design methodology for a stochastic synthetic gene network. Math Biosci (2011) 0.84
Identification of infection- and defense-related genes via a dynamic host-pathogen interaction network using a Candida albicans-zebrafish infection model. J Innate Immun (2013) 0.84
Robust synthetic gene network design via library-based search method. Bioinformatics (2011) 0.83
Comparisons of robustness and sensitivity between cancer and normal cells by microarray data. Cancer Inform (2008) 0.83
Identification of network-based biomarkers of cardioembolic stroke using a systems biology approach with time series data. BMC Syst Biol (2015) 0.81
Construction and clarification of dynamic gene regulatory network of cancer cell cycle via microarray data. Cancer Inform (2007) 0.81
Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana. BMC Bioinformatics (2011) 0.81
Stochastic spatio-temporal dynamic model for gene/protein interaction network in early Drosophila development. Gene Regul Syst Bio (2009) 0.80
[Study on the epidemiological characteristics of rubella from 1990-2006 in Shanghai]. Zhonghua Liu Xing Bing Xue Za Zhi (2007) 0.80
Reconstructing a network of stress-response regulators via dynamic system modeling of gene regulation. Gene Regul Syst Bio (2008) 0.79
On the increase in network robustness and decrease in network response ability during the aging process: a systems biology approach via microarray data. IEEE/ACM Trans Comput Biol Bioinform (2013) 0.79
Prediction of phenotype-associated genes via a cellular network approach: a Candida albicans infection case study. PLoS One (2012) 0.78
Quantitative characterization of nanoparticles in blood by transmission electron microscopy with a window-type microchip nanopipet. Anal Chem (2012) 0.78
Multiobjective H2/H∞ synthetic gene network design based on promoter libraries. Math Biosci (2011) 0.78
Programmable cellular retention of nanoparticles by replacing the synergistic anion of transferrin. ACS Nano (2012) 0.78
The protease-mediated nucleus shuttles of subnanometer gold quantum dots for real-time monitoring of apoptotic cell death. J Am Chem Soc (2010) 0.77
Systematic Biological Filter Design with a Desired I/O Filtering Response Based on Promoter-RBS Libraries. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.77
Heat-activated sustaining nitric oxide release from zwitterionic diazeniumdiolate loaded in thermo-sensitive liposomes. Nitric Oxide (2010) 0.77
Systematic approach to Escherichia coli cell population control using a genetic lysis circuit. BMC Syst Biol (2014) 0.77
Multiple target drug cocktail design for attacking the core network markers of four cancers using ligand-based and structure-based virtual screening methods. BMC Med Genomics (2015) 0.77
The role of TGF-β signaling and apoptosis in innate and adaptive immunity in zebrafish: a systems biology approach. BMC Syst Biol (2014) 0.77
Adult Living Donor Liver Transplantation Across ABO-Incompatibility. Medicine (Baltimore) (2015) 0.76
Cross-talks of sensory transcription networks in response to various environmental stresses. Interdiscip Sci (2009) 0.76
Rapid quantitative analysis of clarithromycin in rat plasma by UPLC-MS/MS after intravenous injection of the clarithromycin-loaded ultrafine PLGA nanoparticles. J Chromatogr B Analyt Technol Biomed Life Sci (2012) 0.76
Ultrafine PEG-coated poly(lactic-co-glycolic acid) nanoparticles formulated by hydrophobic surfactant-assisted one-pot synthesis for biomedical applications. Nanotechnology (2011) 0.76
Validation of the Model for End-Stage Liver Disease Score Criteria in Urgent Liver Transplantation for Acute Flare Up of Hepatitis B. Medicine (Baltimore) (2016) 0.75
The Preference for Anterior Approach Major Hepatectomy: Experience Over 3 Decades and a Propensity Score-Matching Analysis in Right Hepatectomy for Hepatocellular Carcinoma. Medicine (Baltimore) (2015) 0.75
Nonlinear dynamic trans/cis regulatory circuit for gene transcription via microarray data. Gene Regul Syst Bio (2007) 0.75
Betel quid chewing leads to the development of unique de novo malignancies in liver transplant recipients, a retrospective single center study in Taiwan. Medicine (Baltimore) (2016) 0.75
Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection. BMC Syst Biol (2014) 0.75
Robust synchronization analysis in nonlinear stochastic cellular networks with time-varying delays, intracellular perturbations and intercellular noise. Math Biosci (2011) 0.75
[Analysis on heavy metal pollution in major seafoods from Zhoushan Fishery, China]. Zhonghua Liu Xing Bing Xue Za Zhi (2012) 0.75
[Mn(C4H10ON)(H2O)][Fe(CN)6]: a three-dimensional cyanide-bridged ferrimagnet with a morpholine ligand. Inorg Chem (2010) 0.75
C-Reactive Protein (CRP) is a Promising Diagnostic Immunohistochemical Marker for Intrahepatic Cholangiocarcinoma and is Associated With Better Prognosis. Am J Surg Pathol (2017) 0.75
Functional characterization of insulation effect for synthetic gene circuits in mammalian cells. ACS Synth Biol (2017) 0.75
Systematic Design of a Quorum Sensing-Based Biosensor for Enhanced Detection of Metal Ion in Escherichia Coli. IEEE Trans Biomed Circuits Syst (2016) 0.75
Estimating Sensorimotor Mapping From Stimuli to Behaviors to Infer C. elegans Movements by Neural Transmission Ability Through Connectome Databases. IEEE Trans Neural Netw Learn Syst (2015) 0.75