Published in Nucleic Acids Res on July 01, 2006
Prediction of reversibly oxidized protein cysteine thiols using protein structure properties. Protein Sci (2008) 1.12
Functional insight into Maelstrom in the germline piRNA pathway: a unique domain homologous to the DnaQ-H 3'-5' exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch. Biol Direct (2008) 1.11
Arabidopsis tetraspanins are confined to discrete expression domains and cell types in reproductive tissues and form homo- and heterodimers when expressed in yeast. Plant Physiol (2013) 0.91
The logic of kinetic regulation in the thioredoxin system. BMC Syst Biol (2011) 0.89
DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines. Nucleic Acids Res (2010) 0.89
MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence. Nucleic Acids Res (2011) 0.89
Structure and function of nucleotide sugar transporters: Current progress. Comput Struct Biotechnol J (2014) 0.87
Cloning and characterization of a novel cold-active glycoside hydrolase family 1 enzyme with β-glucosidase, β-fucosidase and β-galactosidase activities. BMC Biotechnol (2013) 0.87
A simplified approach to disulfide connectivity prediction from protein sequences. BMC Bioinformatics (2008) 0.86
Nitrosative/oxidative stress conditions regulate thioredoxin-interacting protein (TXNIP) expression and thioredoxin-1 (TRX-1) nuclear localization. PLoS One (2013) 0.84
Deorphanization and target validation of cross-tick species conserved novel Amblyomma americanum tick saliva protein. Int J Parasitol (2013) 0.84
PBOV1 is a human de novo gene with tumor-specific expression that is associated with a positive clinical outcome of cancer. PLoS One (2013) 0.84
A novel homozygous p.Arg527Leu LMNA mutation in two unrelated Egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome. Eur J Hum Genet (2012) 0.83
SDS, a structural disruption score for assessment of missense variant deleteriousness. Front Genet (2014) 0.82
Purification and characterization of DR_2577 (SlpA) a major S-layer protein from Deinococcus radiodurans. Front Microbiol (2015) 0.82
Divergent functions of the Arabidopsis mitochondrial SCO proteins: HCC1 is essential for COX activity while HCC2 is involved in the UV-B stress response. Front Plant Sci (2014) 0.82
Convergent evolution of IL-6 in two leporids (Oryctolagus and Pentalagus) originated an extended protein. Immunogenetics (2014) 0.80
Tryptogalinin is a tick Kunitz serine protease inhibitor with a unique intrinsic disorder. PLoS One (2013) 0.80
Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs. Innate Immun (2015) 0.79
Leporid immunoglobulin G shows evidence of strong selective pressure on the hinge and CH3 domains. Open Biol (2014) 0.79
Mutation in ST6GALNAC5 identified in family with coronary artery disease. Sci Rep (2014) 0.78
Folding machineries displayed on a cation-exchanger for the concerted refolding of cysteine- or proline-rich proteins. BMC Biotechnol (2009) 0.78
Metal dealing at the origin of the Chordata phylum: the metallothionein system and metal overload response in amphioxus. PLoS One (2012) 0.78
Phospholipase A1 Modulates the Cell Envelope Phospholipid Content of Brucella melitensis, Contributing to Polymyxin Resistance and Pathogenicity. Antimicrob Agents Chemother (2015) 0.77
A Recombinant Fungal Chitin Deacetylase Produces Fully Defined Chitosan Oligomers with Novel Patterns of Acetylation. Appl Environ Microbiol (2016) 0.76
Comparative analysis of cystatin superfamily in platyhelminths. PLoS One (2015) 0.76
Proteomic analysis reveals a novel function of the kinase Sat4p in Saccharomyces cerevisiae mitochondria. PLoS One (2014) 0.76
Transport genes and chemotaxis in Laribacter hongkongensis: a genome-wide analysis. Cell Biosci (2011) 0.76
The biochemical properties of the Arabidopsis ecto-nucleoside triphosphate diphosphohydrolase AtAPY1 contradict a direct role in purinergic signaling. PLoS One (2015) 0.76
CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures. Adv Bioinformatics (2012) 0.75
Truncated Variants of Gaussia Luciferase with Tyrosine Linker for Site-Specific Bioconjugate Applications. Sci Rep (2016) 0.75
Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale. BMC Genomics (2017) 0.75
Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice. Proteome Sci (2017) 0.75
Evidence for disulfide bonds in SR Protein Kinase 1 (SRPK1) that are required for activity and nuclear localization. PLoS One (2017) 0.75
Evolutionary Insights into IL17A in Lagomorphs. Mediators Inflamm (2015) 0.75
Biochemical characterization of extra- and intracellular endoxylanse from thermophilic bacterium Caldicellulosiruptor kronotskyensis. Sci Rep (2016) 0.75
Molecular and immunological characterization of cathepsin L-like cysteine protease of Paragonimus pseudoheterotremus. Parasitol Res (2016) 0.75
Identification and cloning of class II and III chitinases from alkaline floral nectar of Rhododendron irroratum, Ericaceae. Planta (2016) 0.75
Multifactorial level of extremostability of proteins: can they be exploited for protein engineering? Extremophiles (2017) 0.75
Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol (1999) 33.07
The Protein Data Bank. Acta Crystallogr D Biol Crystallogr (2002) 14.44
Fast and reliable prediction of noncoding RNAs. Proc Natl Acad Sci U S A (2005) 8.15
Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput Chem (1996) 5.16
The spectrum kernel: a string kernel for SVM protein classification. Pac Symp Biocomput (2002) 4.90
Mismatch string kernels for discriminative protein classification. Bioinformatics (2004) 3.27
Engineering support vector machine kernels that recognize translation initiation sites. Bioinformatics (2000) 2.29
Using the Fisher kernel method to detect remote protein homologies. Proc Int Conf Intell Syst Mol Biol (1999) 2.28
DiANNA: a web server for disulfide connectivity prediction. Nucleic Acids Res (2005) 1.98
UniqueProt: Creating representative protein sequence sets. Nucleic Acids Res (2003) 1.78
Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins. Proteins (1999) 1.64
Profile-based string kernels for remote homology detection and motif extraction. Proc IEEE Comput Syst Bioinform Conf (2004) 1.43
Disulfide connectivity prediction using secondary structure information and diresidue frequencies. Bioinformatics (2005) 1.38
Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences. Proteins (2004) 1.19
Prediction of the disulfide bonding state of cysteines in proteins with hidden neural networks. Protein Eng (2002) 1.09
Support vector machines with profile-based kernels for remote protein homology detection. Genome Inform (2004) 0.97
Mining viral protease data to extract cleavage knowledge. Bioinformatics (2002) 0.94
Learning to discriminate between ligand-bound and disulfide-bound cysteines. Protein Eng Des Sel (2004) 0.90
DiANNA: a web server for disulfide connectivity prediction. Nucleic Acids Res (2005) 1.98
Disulfide connectivity prediction using secondary structure information and diresidue frequencies. Bioinformatics (2005) 1.38
Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model. J Comput Biol (2007) 0.98
Asymptotics of RNA shapes. J Comput Biol (2008) 0.96
Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. Pac Symp Biocomput (2000) 0.95
LocalMove: computing on-lattice fits for biopolymers. Nucleic Acids Res (2008) 0.82
BTW: a web server for Boltzmann time warping of gene expression time series. Nucleic Acids Res (2006) 0.80