Published in Environ Microbiol on August 01, 2006
Evolution and diversity of Rickettsia bacteria. BMC Biol (2009) 2.04
The plant microbiome. Genome Biol (2013) 1.77
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J (2011) 1.75
Succession of bacterial populations during plant residue decomposition in rice field soil. Appl Environ Microbiol (2009) 1.38
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants. ISME J (2013) 1.26
Sulfate-reducing microorganisms in wetlands - fameless actors in carbon cycling and climate change. Front Microbiol (2012) 1.22
Burkholderia species are major inhabitants of white lupin cluster roots. Appl Environ Microbiol (2011) 1.04
Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA. Appl Environ Microbiol (2006) 1.03
Highly sensitive direct detection and quantification of Burkholderia pseudomallei bacteria in environmental soil samples by using real-time PCR. Appl Environ Microbiol (2011) 1.02
Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis. Microb Ecol (2010) 1.01
Extraction of mRNA from soil. Appl Environ Microbiol (2010) 0.98
The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions. Appl Environ Microbiol (2011) 0.88
A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input. Appl Environ Microbiol (2014) 0.88
Different bacterial populations associated with the roots and rhizosphere of rice incorporate plant-derived carbon. Appl Environ Microbiol (2015) 0.87
Prevalence of betaproteobacterial sequences in nifH gene pools associated with roots of modern rice cultivars. Microb Ecol (2008) 0.82
Fungal endophyte Phomopsis liquidambari affects nitrogen transformation processes and related microorganisms in the rice rhizosphere. Front Microbiol (2015) 0.81
Microbial Community Structure in the Rhizosphere of Rice Plants. Front Microbiol (2016) 0.80
The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems. J Sci Food Agric (2014) 0.79
Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria. Planta (2015) 0.76
Multitarget Quantitative PCR Improves Detection and Predicts Cultivability of the Pathogen Burkholderia pseudomallei. Appl Environ Microbiol (2017) 0.75
Soil chemical properties affect the reaction of forest soil bacteria to drought and rewetting stress. Ann Microbiol (2014) 0.75
Isolation and characterization of Magnetospirillum sp. strain 15-1 as a representative anaerobic toluene-degrader from a constructed wetland model. PLoS One (2017) 0.75
Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol (2009) 3.13
Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl Environ Microbiol (2003) 2.69
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature (2007) 2.12
Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl Environ Microbiol (2002) 2.02
Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog. Appl Environ Microbiol (2006) 1.99
Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog. Environ Microbiol (2004) 1.85
Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ Microbiol (2005) 1.76
Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil. Proc Natl Acad Sci U S A (2011) 1.58
In situ stable isotope probing of methanogenic archaea in the rice rhizosphere. Science (2005) 1.57
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ Microbiol (2003) 1.57
Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc Natl Acad Sci U S A (2008) 1.55
Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen. PLoS One (2011) 1.54
Impact of flooding on soil bacterial communities associated with poplar (Populus sp.) trees. FEMS Microbiol Ecol (2005) 1.44
Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils. Appl Environ Microbiol (2006) 1.43
Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere. Science (2006) 1.43
Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol (2002) 1.40
Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase. Int J Syst Evol Microbiol (2010) 1.40
Diversity, structure, and size of n(2)o-producing microbial communities in soils-what matters for their functioning? Adv Appl Microbiol (2011) 1.36
Detecting active methanogenic populations on rice roots using stable isotope probing. Environ Microbiol (2005) 1.35
Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils. Environ Microbiol (2005) 1.34
Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions. ISME J (2011) 1.33
Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures. Appl Environ Microbiol (2003) 1.32
Phylogenetic identity, growth-response time and rRNA operon copy number of soil bacteria indicate different stages of community succession. Environ Microbiol (2007) 1.30
High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol Ecol (2007) 1.29
Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment. Environ Microbiol (2005) 1.26
Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. Environ Microbiol (2005) 1.26
Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2. Appl Environ Microbiol (2003) 1.22
Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field. FEMS Microbiol Ecol (2005) 1.21
DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment. Environ Microbiol (2011) 1.21
Methylocella tundrae sp. nov., a novel methanotrophic bacterium from acidic tundra peatlands. Int J Syst Evol Microbiol (2004) 1.17
Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2. J Bacteriol (2010) 1.16
Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M. acetivorans and in rice field soil. Appl Environ Microbiol (2009) 1.15
Isolation and characterization of new strains of methanogens from cold terrestrial habitats. Syst Appl Microbiol (2003) 1.14
Isolation of a Methylocystis strain containing a novel pmoA-like gene. FEMS Microbiol Ecol (2002) 1.13
Identification of iron-reducing microorganisms in anoxic rice paddy soil by 13C-acetate probing. ISME J (2009) 1.13
Effect of nitrogen fertilization on methane oxidation, abundance, community structure, and gene expression of methanotrophs in the rice rhizosphere. ISME J (2010) 1.13
Responses of methanogen mcrA genes and their transcripts to an alternate dry/wet cycle of paddy field soil. Appl Environ Microbiol (2011) 1.13
Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat. ISME J (2008) 1.12
Activity and community structure of methane-oxidising bacteria in a wet meadow soil. FEMS Microbiol Ecol (2002) 1.09
Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Syst Appl Microbiol (2006) 1.09
Selective stimulation of type I methanotrophs in a rice paddy soil by urea fertilization revealed by RNA-based stable isotope probing. FEMS Microbiol Ecol (2008) 1.08
Effect of temperature on composition of the methanotrophic community in rice field and forest soil. FEMS Microbiol Ecol (2007) 1.07
Community analysis of methanogenic archaea within a riparian flooding gradient. Environ Microbiol (2004) 1.07
Phylogenetic diversity and metagenomics of candidate division OP3. Environ Microbiol (2010) 1.06
Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat. Environ Microbiol (2011) 1.05
Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil. Appl Environ Microbiol (2007) 1.05
Elucidating the microbial resuscitation cascade in biological soil crusts following a simulated rain event. Environ Microbiol (2013) 1.04
Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil. Curr Opin Biotechnol (2006) 1.03
Transcriptional activity of paddy soil bacterial communities. Environ Microbiol (2008) 1.03
Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high-affinity [NiFe]-hydrogenase. Environ Microbiol (2009) 1.03
Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50°C. Environ Microbiol (2010) 1.03
Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA. Appl Environ Microbiol (2006) 1.03
Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp. Environ Microbiol Rep (2011) 1.03
Methylotrophic autotrophy in Beijerinckia mobilis. J Bacteriol (2005) 1.02
Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog. Int J Syst Evol Microbiol (2007) 1.02
Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions. PLoS One (2013) 1.02
Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing 'signature' fatty acids of type I methanotrophs. Int J Syst Evol Microbiol (2007) 1.02
Genome data mining and soil survey for the novel group 5 [NiFe]-hydrogenase to explore the diversity and ecological importance of presumptive high-affinity H(2)-oxidizing bacteria. Appl Environ Microbiol (2011) 1.02
A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases. Proc Natl Acad Sci U S A (2014) 1.02
NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria. Microbiology (2004) 1.01
Comparative analysis of the conventional and novel pmo (particulate methane monooxygenase) operons from methylocystis strain SC2. Appl Environ Microbiol (2004) 1.01
Niche differentiation of ammonia oxidizers and nitrite oxidizers in rice paddy soil. Environ Microbiol (2013) 1.01
Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques. FEMS Microbiol Ecol (2005) 1.00
Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil. Appl Environ Microbiol (2011) 0.99
Diversity of methanotrophic bacteria in tropical upland soils under different land uses. Appl Environ Microbiol (2005) 0.99
Methanocella arvoryzae sp. nov., a hydrogenotrophic methanogen isolated from rice field soil. Int J Syst Evol Microbiol (2010) 0.99
Extraction of mRNA from soil. Appl Environ Microbiol (2010) 0.98
Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales. FEMS Microbiol Ecol (2003) 0.98
Diversity and ubiquity of thermophilic methanogenic archaea in temperate anoxic soils. Environ Microbiol (2006) 0.97
Cross-feeding of methane carbon among bacteria on rice roots revealed by DNA-stable isotope probing. Environ Microbiol Rep (2009) 0.97
Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria. Int J Syst Evol Microbiol (2009) 0.96
Carbon isotope fractionation during acetoclastic methanogenesis by Methanosaeta concilii in culture and a lake sediment. Appl Environ Microbiol (2006) 0.96
Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids. Environ Microbiol (2007) 0.96
Diversity of the particulate methane monooxygenase gene in methanotrophic samples from different rice field soils in China and the Philippines. Syst Appl Microbiol (2002) 0.95
Transcriptional response of methanogen mcrA genes to oxygen exposure of rice field soil. Environ Microbiol Rep (2011) 0.93
Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes. FEMS Microbiol Ecol (2003) 0.93
Cold-temperate climate: a factor for selection of ammonia oxidizers in upland soil? Can J Microbiol (2005) 0.93
Responses of methanogenic archaeal community to oxygen exposure in rice field soil. Environ Microbiol Rep (2009) 0.93
Stable carbon isotope fractionation by methylotrophic methanogenic archaea. Appl Environ Microbiol (2012) 0.92
Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environ Microbiol (2007) 0.91
In situ measurement of methane fluxes and analysis of transcribed particulate methane monooxygenase in desert soils. Environ Microbiol (2009) 0.90
Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands. Front Microbiol (2012) 0.90
Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil. ISME J (2011) 0.90
Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures. Appl Environ Microbiol (2013) 0.89
Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential. J Bacteriol (2012) 0.88
Effect of inhibition of acetoclastic methanogenesis on growth of archaeal populations in an anoxic model environment. Appl Environ Microbiol (2006) 0.88
Influence of temperature on the composition and activity of denitrifying soil communities. FEMS Microbiol Ecol (2010) 0.86
Carbon isotope fractionation by sulfate-reducing bacteria using different pathways for the oxidation of acetate. Environ Sci Technol (2008) 0.86
Effect of soil properties and hydrology on archaeal community composition in three temperate grasslands on peat. FEMS Microbiol Ecol (2013) 0.86
Plant presence and species combination, but not diversity, influence denitrifier activity and the composition of nirK-type denitrifier communities in grassland soil. FEMS Microbiol Ecol (2009) 0.86
Effect of temperature change on the composition of the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil. FEMS Microbiol Ecol (2010) 0.86
Dry/Wet cycles change the activity and population dynamics of methanotrophs in rice field soil. Appl Environ Microbiol (2013) 0.85
Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation. Appl Environ Microbiol (2011) 0.84
Complete genome sequence of Beijerinckia indica subsp. indica. J Bacteriol (2010) 0.84