Structural analysis of viral nucleocapsids by subtraction of partial projections.

PubWeight™: 0.98‹?› | Rank: Top 15%

🔗 View Article (PMC 1876683)

Published in J Struct Biol on September 16, 2006

Authors

Ying Zhang1, Victor A Kostyuchenko, Michael G Rossmann

Author Affiliations

1: Department of Biological Sciences, Purdue University, 915 W. State Street, West Lafayette, IN 47907-2054, USA.

Articles cited by this

EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol (1999) 27.52

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J Struct Biol (1996) 22.89

Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell (2002) 9.13

A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. J Struct Biol (1996) 5.39

Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol Mol Biol Rev (1999) 5.32

Single-particle electron cryo-microscopy: towards atomic resolution. Q Rev Biophys (2000) 4.86

Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs. Philos Trans R Soc Lond B Biol Sci (1971) 4.75

Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nat Struct Biol (2003) 4.11

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation. EMBO J (2004) 3.69

Structures of immature flavivirus particles. EMBO J (2003) 3.62

Liquid-crystalline, phage-like packing of encapsidated DNA in herpes simplex virus. Cell (1991) 3.20

Synthesis and secretion of recombinant tick-borne encephalitis virus protein E in soluble and particulate form. J Virol (1995) 2.97

Three-dimensional reconstruction of icosahedral particles--the uncommon line. J Struct Biol (1996) 2.91

Three-dimensional structures of maturable and abortive capsids of equine herpesvirus 1 from cryoelectron microscopy. J Virol (1990) 2.84

Computer averaging of electron micrographs of 40S ribosomal subunits. Science (1981) 2.79

Protein-RNA interactions in an icosahedral virus at 3.0 A resolution. Science (1989) 2.45

Mice immunized with a subviral particle containing the Japanese encephalitis virus prM/M and E proteins are protected from lethal JEV infection. Virology (1992) 2.15

West Nile virus core protein; tetramer structure and ribbon formation. Structure (2004) 2.04

Solution structure of dengue virus capsid protein reveals another fold. Proc Natl Acad Sci U S A (2004) 1.85

Recombinant vaccinia virus producing the prM and E proteins of yellow fever virus protects mice from lethal yellow fever encephalitis. Virology (1992) 1.76

Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly. Nat Struct Biol (2003) 1.74

Double-helical RNA in satellite tobacco mosaic virus. Nature (1993) 1.66

The refined crystal structure of cowpea mosaic virus at 2.8 A resolution. Virology (1999) 1.46

Recombinant vaccinia viruses co-expressing dengue-1 glycoproteins prM and E induce neutralizing antibodies in mice. Vaccine (1994) 1.43

Nodavirus coat protein imposes dodecahedral RNA structure independent of nucleotide sequence and length. J Virol (2004) 1.35

Electron cryomicroscopy structure of N-ethyl maleimide sensitive factor at 11 A resolution. EMBO J (2003) 1.20

Transport and budding at two distinct sites of visible nucleocapsids of West Nile (Sarafend) virus. J Med Virol (2001) 1.17

Classification and three-dimensional reconstruction of unevenly distributed or symmetry mismatched features of icosahedral particles. J Struct Biol (2005) 0.97

Articles by these authors

Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell (2002) 9.13

A structural perspective of the flavivirus life cycle. Nat Rev Microbiol (2005) 5.02

Outcome of the first electron microscopy validation task force meeting. Structure (2012) 4.35

Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nat Struct Biol (2003) 4.11

Structure of the immature dengue virus at low pH primes proteolytic maturation. Science (2008) 3.86

Conformational changes of the flavivirus E glycoprotein. Structure (2004) 3.66

Structures of immature flavivirus particles. EMBO J (2003) 3.62

Structure of West Nile virus. Science (2003) 3.48

Structure of the cell-puncturing device of bacteriophage T4. Nature (2002) 3.32

Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host. Cell (2004) 3.31

Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins. Nat Struct Mol Biol (2008) 3.27

The flavivirus precursor membrane-envelope protein complex: structure and maturation. Science (2008) 3.26

The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell (2008) 3.07

The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc Natl Acad Sci U S A (2002) 3.07

The tail structure of bacteriophage T4 and its mechanism of contraction. Nat Struct Mol Biol (2005) 2.82

Placement of the structural proteins in Sindbis virus. J Virol (2002) 2.81

Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29. Mol Cell (2005) 2.80

A virus-like particle vaccine for epidemic Chikungunya virus protects nonhuman primates against infection. Nat Med (2010) 2.62

Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc Natl Acad Sci U S A (2005) 2.53

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci U S A (2009) 2.52

Structural changes of envelope proteins during alphavirus fusion. Nature (2010) 2.32

Outcome of a workshop on archiving structural models of biological macromolecules. Structure (2006) 2.32

Molecular architecture of the prolate head of bacteriophage T4. Proc Natl Acad Sci U S A (2004) 2.24

The genome of bacteriophage phiKZ of Pseudomonas aeruginosa. J Mol Biol (2002) 2.09

Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN. Cell (2006) 2.08

Three-dimensional structure of bacteriophage T4 baseplate. Nat Struct Biol (2003) 2.05

The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation. Proc Natl Acad Sci U S A (2004) 2.05

The structural basis for serotype-specific neutralization of dengue virus by a human antibody. Sci Transl Med (2012) 1.95

Structural changes of bacteriophage phi29 upon DNA packaging and release. EMBO J (2006) 1.90

Structural studies of the giant mimivirus. PLoS Biol (2009) 1.88

Morphogenesis of the T4 tail and tail fibers. Virol J (2010) 1.86

Structural basis for the preferential recognition of immature flaviviruses by a fusion-loop antibody. EMBO J (2009) 1.85

West Nile virus in complex with the Fab fragment of a neutralizing monoclonal antibody. Proc Natl Acad Sci U S A (2006) 1.83

The crystal structure of coxsackievirus A21 and its interaction with ICAM-1. Structure (2005) 1.82

Crystal structure of human enterovirus 71. Science (2012) 1.79

The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids. Mol Cell (2007) 1.79

Structure of immature West Nile virus. J Virol (2007) 1.77

Dengue structure differs at the temperatures of its human and mosquito hosts. Proc Natl Acad Sci U S A (2013) 1.75

Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly. Nat Struct Biol (2003) 1.74

Mapping the structure and function of the E1 and E2 glycoproteins in alphaviruses. Structure (2006) 1.68

Interpretation of electron density with stereographic roadmap projections. J Struct Biol (2006) 1.64

Cryo-electron microscopy of the giant Mimivirus. J Mol Biol (2005) 1.61

Structural changes in dengue virus when exposed to a temperature of 37°C. J Virol (2013) 1.60

Neutralization of West Nile virus by cross-linking of its surface proteins with Fab fragments of the human monoclonal antibody CR4354. Proc Natl Acad Sci U S A (2010) 1.57

Mimivirus shows dramatic genome reduction after intraamoebal culture. Proc Natl Acad Sci U S A (2011) 1.54

The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria. EMBO J (2009) 1.51

Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses. Proc Natl Acad Sci U S A (2008) 1.51

Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor. Structure (2008) 1.47

The structure of porcine parvovirus: comparison with related viruses. J Mol Biol (2002) 1.46

Structure of Sputnik, a virophage, at 3.5-Å resolution. Proc Natl Acad Sci U S A (2012) 1.45

Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol Evol (2012) 1.40

Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4. J Mol Biol (2008) 1.39

The functional domains of bacteriophage t4 terminase. J Biol Chem (2004) 1.37

A potent anti-dengue human antibody preferentially recognizes the conformation of E protein monomers assembled on the virus surface. EMBO Mol Med (2014) 1.37

An icosahedral algal virus has a complex unique vertex decorated by a spike. Proc Natl Acad Sci U S A (2009) 1.35

Complexes of poliovirus serotypes with their common cellular receptor, CD155. J Virol (2003) 1.31

Maturation of flaviviruses starts from one or more icosahedrally independent nucleation centres. EMBO Rep (2011) 1.31

The structure of human parvovirus B19. Proc Natl Acad Sci U S A (2004) 1.30

Asymmetric binding of transferrin receptor to parvovirus capsids. Proc Natl Acad Sci U S A (2007) 1.30

Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages. Proc Natl Acad Sci U S A (2011) 1.28

Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike. Mol Cell (2009) 1.24

Capturing a flavivirus pre-fusion intermediate. PLoS Pathog (2009) 1.24

Three-dimensional structure and function of the Paramecium bursaria chlorella virus capsid. Proc Natl Acad Sci U S A (2011) 1.17

Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds. J Virol (2004) 1.17

Structure of decay-accelerating factor bound to echovirus 7: a virus-receptor complex. Proc Natl Acad Sci U S A (2002) 1.17

Structural studies of the Sputnik virophage. J Virol (2009) 1.17

Cryo-EM study of the Pseudomonas bacteriophage phiKZ. Structure (2007) 1.17

Dimeric rous sarcoma virus capsid protein structure relevant to immature Gag assembly. J Mol Biol (2004) 1.17

Molecular dissection of ø29 scaffolding protein function in an in vitro assembly system. J Mol Biol (2006) 1.14

Structure of the small outer capsid protein, Soc: a clamp for stabilizing capsids of T4-like phages. J Mol Biol (2009) 1.14

Conformational switching by the scaffolding protein D directs the assembly of bacteriophage phiX174. Mol Cell (2004) 1.12

Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife (2013) 1.10

A three-dimensional cryo-electron microscopy structure of the bacteriophage phiKZ head. J Mol Biol (2005) 1.10

Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage. J Virol (2011) 1.10

Structural analyses of Phycodnaviridae and Iridoviridae. Acta Crystallogr D Biol Crystallogr (2003) 1.09

Genome packaging in viruses. Curr Opin Struct Biol (2010) 1.09

Structural comparison of different antibodies interacting with parvovirus capsids. J Virol (2009) 1.08

The headful packaging nuclease of bacteriophage T4. Mol Microbiol (2008) 1.08

The capsid proteins of a large, icosahedral dsDNA virus. J Mol Biol (2008) 1.07

Bacteriophage assembly. Viruses (2011) 1.07

Structural studies of bacteriophage alpha3 assembly. J Mol Biol (2003) 1.06

In vitro-assembled alphavirus core-like particles maintain a structure similar to that of nucleocapsid cores in mature virus. J Virol (2002) 1.06

Structural studies of Hantaan virus. J Virol (2010) 1.05

Interaction of decay-accelerating factor with coxsackievirus B3. J Virol (2007) 1.04

The coiled-coil domain structure of the Sin Nombre virus nucleocapsid protein. J Mol Biol (2006) 1.04

The tail lysozyme complex of bacteriophage T4. Int J Biochem Cell Biol (2003) 1.04

The structure of bovine viral diarrhea virus RNA-dependent RNA polymerase and its amino-terminal domain. Structure (2006) 1.04

The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate. Structure (2009) 1.02

Evolution of bacteriophage tails: Structure of T4 gene product 10. J Mol Biol (2006) 1.02

Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail. Proc Natl Acad Sci U S A (2008) 1.01