MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development.

PubWeight™: 4.01‹?› | Rank: Top 1%

🔗 View Article (PMC 1759902)

Published in Genes Dev on January 01, 2007

Authors

Paul L Boutz1, Geetanjali Chawla, Peter Stoilov, Douglas L Black

Author Affiliations

1: Department of Microbiology, Immunology, and Molecular Genetics, University of California at Los Angeles, Los Angeles, California 90095, USA.

Associated clinical trials:

Identification of Novel Skeletal Muscle-derived Factors That Promote Lipid Oxidation (Columbus) (Columbus) | NCT01911091

Articles citing this

(truncated to the top 100)

The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol Cell (2007) 7.99

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes Dev (2007) 5.83

HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer. Nature (2009) 5.48

microRNA-133a regulates cardiomyocyte proliferation and suppresses smooth muscle gene expression in the heart. Genes Dev (2008) 5.39

ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol Cell (2009) 5.03

Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev (2010) 4.75

MicroRNA-208a is a regulator of cardiac hypertrophy and conduction in mice. J Clin Invest (2009) 4.39

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev (2008) 4.24

Expression of microRNAs is dynamically regulated during cardiomyocyte hypertrophy. J Mol Cell Cardiol (2007) 3.67

Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet (2011) 3.36

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart. Proc Natl Acad Sci U S A (2008) 3.33

Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1. Mol Cell (2007) 3.22

Posttranscriptional regulation of BK channel splice variant stability by miR-9 underlies neuroadaptation to alcohol. Neuron (2008) 3.13

MicroRNA regulatory networks in cardiovascular development. Dev Cell (2010) 3.09

MicroRNA control of muscle development and disease. Curr Opin Cell Biol (2009) 3.04

MicroRNA-206: the skeletal muscle-specific myomiR. Biochim Biophys Acta (2008) 2.64

Transcriptional mechanisms regulating skeletal muscle differentiation, growth and homeostasis. Nat Rev Mol Cell Biol (2011) 2.51

Transforming growth factor-beta-regulated miR-24 promotes skeletal muscle differentiation. Nucleic Acids Res (2008) 2.44

MicroRNAs (miRNAs) in neurodegenerative diseases. Brain Pathol (2008) 2.39

The muscle-specific microRNA miR-206 blocks human rhabdomyosarcoma growth in xenotransplanted mice by promoting myogenic differentiation. J Clin Invest (2009) 2.36

MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease. Int J Biochem Cell Biol (2009) 2.30

Multilevel regulation of gene expression by microRNAs. Science (2008) 2.28

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level. Nucleic Acids Res (2009) 2.12

MiR-322/424 and -503 are induced during muscle differentiation and promote cell cycle quiescence and differentiation by down-regulation of Cdc25A. Mol Biol Cell (2010) 1.89

SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control. Nat Struct Mol Biol (2010) 1.78

The role of miRNAs in regulating gene expression networks. J Mol Biol (2013) 1.74

microRNAs and muscle disorders. J Cell Sci (2009) 1.73

The cardiac transcription network modulated by Gata4, Mef2a, Nkx2.5, Srf, histone modifications, and microRNAs. PLoS Genet (2011) 1.69

Evidence of MyomiR network regulation of beta-myosin heavy chain gene expression during skeletal muscle atrophy. Physiol Genomics (2009) 1.62

Tissue-specific splicing factor gene expression signatures. Nucleic Acids Res (2008) 1.49

Acceleration of muscle regeneration by local injection of muscle-specific microRNAs in rat skeletal muscle injury model. J Cell Mol Med (2010) 1.44

Auto- and cross-regulation of the hnRNP L proteins by alternative splicing. Mol Cell Biol (2009) 1.41

Sam68 regulates a set of alternatively spliced exons during neurogenesis. Mol Cell Biol (2008) 1.38

Splicing factor and exon profiling across human tissues. Nucleic Acids Res (2010) 1.37

Muscle weakness in myotonic dystrophy associated with misregulated splicing and altered gating of Ca(V)1.1 calcium channel. Hum Mol Genet (2011) 1.37

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain. Genome Res (2011) 1.35

Autoregulation of Fox protein expression to produce dominant negative splicing factors. RNA (2009) 1.34

MicroRNAs regulate synthesis of the neurotransmitter substance P in human mesenchymal stem cell-derived neuronal cells. Proc Natl Acad Sci U S A (2007) 1.32

The role of miR-103 and miR-107 in regulation of CDK5R1 expression and in cellular migration. PLoS One (2011) 1.29

MicroRNAs in skeletal myogenesis. Cell Cycle (2011) 1.26

MicroRNAs coordinate an alternative splicing network during mouse postnatal heart development. Genes Dev (2010) 1.22

microRNA expression during trophectoderm specification. PLoS One (2009) 1.22

Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2. Crit Rev Biochem Mol Biol (2012) 1.20

Developmental control of CaV1.2 L-type calcium channel splicing by Fox proteins. Mol Cell Biol (2009) 1.20

Vascular smooth muscle phenotypic diversity and function. Physiol Genomics (2010) 1.18

Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation. RNA (2013) 1.17

miR-133b, a muscle-specific microRNA, is a novel prognostic marker that participates in the progression of human colorectal cancer via regulation of CXCR4 expression. Mol Cancer (2013) 1.15

Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts. RNA (2011) 1.14

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression. Brief Funct Genomics (2010) 1.14

Insulin-like growth factor-1 receptor is regulated by microRNA-133 during skeletal myogenesis. PLoS One (2011) 1.13

MicroRNAs-10a and -10b contribute to retinoic acid-induced differentiation of neuroblastoma cells and target the alternative splicing regulatory factor SFRS1 (SF2/ASF). J Biol Chem (2010) 1.11

miR-1 and miR-206 regulate angiogenesis by modulating VegfA expression in zebrafish. Development (2012) 1.10

MicroRNA miR-133b is essential for functional recovery after spinal cord injury in adult zebrafish. Eur J Neurosci (2011) 1.10

Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development. Nat Commun (2014) 1.08

De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function. PLoS Comput Biol (2014) 1.08

NFATc4 is negatively regulated in miR-133a-mediated cardiomyocyte hypertrophic repression. Am J Physiol Heart Circ Physiol (2010) 1.07

RBM4 down-regulates PTB and antagonizes its activity in muscle cell-specific alternative splicing. J Cell Biol (2011) 1.04

Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes. BMC Genomics (2013) 1.04

Regulation of the mutually exclusive exons 8a and 8 in the CaV1.2 calcium channel transcript by polypyrimidine tract-binding protein. J Biol Chem (2011) 1.01

New insights into functional roles of the polypyrimidine tract-binding protein. Int J Mol Sci (2013) 1.00

Thinking about RNA? MicroRNAs in the brain. Mamm Genome (2008) 0.98

Levels of vascular endothelial growth factor-A165b (VEGF-A165b) are elevated in experimental glaucoma. Mol Vis (2008) 0.98

High glucose suppresses human islet insulin biosynthesis by inducing miR-133a leading to decreased polypyrimidine tract binding protein-expression. PLoS One (2010) 0.97

Alternative RNA splicing and cancer. Wiley Interdiscip Rev RNA (2013) 0.96

Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PLoS One (2009) 0.95

Transgenic overexpression of miR-133a in skeletal muscle. BMC Musculoskelet Disord (2011) 0.93

Expression of human nPTB is limited by extreme suboptimal codon content. PLoS One (2008) 0.92

Integrative analysis of porcine microRNAome during skeletal muscle development. PLoS One (2013) 0.92

The Akt-associated microRNAs. Cell Mol Life Sci (2012) 0.91

MicroRNAs, stem cells and cancer stem cells. World J Stem Cells (2012) 0.91

The expression of myogenic microRNAs indirectly requires protein arginine methyltransferase (Prmt)5 but directly requires Prmt4. Nucleic Acids Res (2010) 0.90

MiR-206, a key modulator of skeletal muscle development and disease. Int J Biol Sci (2015) 0.90

Myostatin genotype regulates muscle-specific miRNA expression in mouse pectoralis muscle. BMC Res Notes (2010) 0.88

Identification of differences in microRNA transcriptomes between porcine oxidative and glycolytic skeletal muscles. BMC Mol Biol (2013) 0.88

A role for RNA post-transcriptional regulation in satellite cell activation. Skelet Muscle (2012) 0.88

A role for polypyrimidine tract binding protein in the establishment of focal adhesions. Mol Cell Biol (2009) 0.88

Comparative expression profiles of microRNA in left and right atrial appendages from patients with rheumatic mitral valve disease exhibiting sinus rhythm or atrial fibrillation. J Transl Med (2014) 0.87

Roles of the canonical myomiRs miR-1, -133 and -206 in cell development and disease. World J Biol Chem (2015) 0.87

Developmental regulation of ecdysone receptor (EcR) and EcR-controlled gene expression during pharate-adult development of honeybees (Apis mellifera). Front Genet (2014) 0.86

MicroRNA in carcinogenesis & cancer diagnostics: a new paradigm. Indian J Med Res (2013) 0.86

Micro-RNA mediated regulation of proliferation, self-renewal and differentiation of mammalian stem cells. Cell Adh Migr (2009) 0.86

ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation. Nat Commun (2015) 0.84

Model-based detection of alternative splicing signals. Bioinformatics (2010) 0.84

A new view of transcriptome complexity and regulation through the lens of local splicing variations. Elife (2016) 0.84

Repressing the neuron within. Bioessays (2008) 0.83

Alternative splicing switching in stem cell lineages. Front Biol (Beijing) (2013) 0.82

Polypyrimidine tract binding protein (hnRNP I) is possibly a conserved modulator of miRNA-mediated gene regulation. PLoS One (2012) 0.82

Non-coding RNA in apicomplexan parasites. Mol Biochem Parasitol (2010) 0.81

A pathway involving HDAC5, cFLIP and caspases regulates expression of the splicing regulator polypyrimidine tract binding protein in the heart. J Cell Sci (2013) 0.81

Overexpression of NF90-NF45 Represses Myogenic MicroRNA Biogenesis, Resulting in Development of Skeletal Muscle Atrophy and Centronuclear Muscle Fibers. Mol Cell Biol (2015) 0.81

Myomaker, Regulated by MYOD, MYOG and miR-140-3p, Promotes Chicken Myoblast Fusion. Int J Mol Sci (2015) 0.81

Complex interaction between dengue virus replication and expression of miRNA-133a. BMC Infect Dis (2016) 0.80

MicroRNA-regulation of Anopheles gambiae immunity to Plasmodium falciparum infection and midgut microbiota. Dev Comp Immunol (2014) 0.80

A novel role of microRNA146b in promoting mammary alveolar progenitor cell maintenance. J Cell Sci (2013) 0.80

Identification and profiling of microRNAs and their target genes from developing caprine skeletal Muscle. PLoS One (2014) 0.79

Regulation of mRNA abundance by polypyrimidine tract-binding protein-controlled alternate 5' splice site choice. PLoS Genet (2014) 0.78

Micromanaging alternative splicing during muscle differentiation. Dev Cell (2007) 0.78

Vitamin D-Regulated MicroRNAs: Are They Protective Factors against Dengue Virus Infection? Adv Virol (2016) 0.75

Large-scale remodeling of a repressed exon ribonucleoprotein to an exon definition complex active for splicing. Elife (2016) 0.75

microRNA133a targets Foxl2 and promotes differentiation of C2C12 into myogenic progenitor cells. DNA Cell Biol (2015) 0.75

Articles cited by this

(truncated to the top 100)

The human genome browser at UCSC. Genome Res (2002) 168.23

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell (2005) 96.87

Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62

Prediction of mammalian microRNA targets. Cell (2003) 53.70

Combinatorial microRNA target predictions. Nat Genet (2005) 50.48

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature (2005) 48.95

Identification of novel genes coding for small expressed RNAs. Science (2001) 44.44

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science (2001) 44.16

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature (2000) 39.31

Identification of tissue-specific microRNAs from mouse. Curr Biol (2002) 34.55

Human MicroRNA targets. PLoS Biol (2004) 34.51

An extensive class of small RNAs in Caenorhabditis elegans. Science (2001) 34.17

c-Myc-regulated microRNAs modulate E2F1 expression. Nature (2005) 31.81

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature (2005) 31.60

The microRNA Registry. Nucleic Acids Res (2004) 29.45

RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev (2001) 26.16

The UCSC Table Browser data retrieval tool. Nucleic Acids Res (2004) 25.12

Principles of microRNA-target recognition. PLoS Biol (2005) 23.70

MicroRNA targets in Drosophila. Genome Biol (2003) 23.59

Asymmetry in the assembly of the RNAi enzyme complex. Cell (2003) 22.18

Specificity of microRNA target selection in translational repression. Genes Dev (2004) 21.14

The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science (2005) 20.51

miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev (2002) 19.24

Functional siRNAs and miRNAs exhibit strand bias. Cell (2003) 19.15

MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res (2005) 18.58

MicroRNA-directed cleavage of HOXB8 mRNA. Science (2004) 18.33

Fast and effective prediction of microRNA/target duplexes. RNA (2004) 18.10

The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol (1999) 17.82

Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature (2005) 17.17

The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet (2005) 17.07

siRNAs can function as miRNAs. Genes Dev (2003) 16.08

MicroRNA expression in zebrafish embryonic development. Science (2005) 15.52

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution. Cell (2005) 15.38

Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell (2005) 15.26

Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biol (2004) 15.15

A pancreatic islet-specific microRNA regulates insulin secretion. Nature (2004) 15.02

Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA (2005) 14.14

Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science (2005) 13.84

Phylogenetic shadowing and computational identification of human microRNA genes. Cell (2005) 13.24

Identification of Drosophila MicroRNA targets. PLoS Biol (2003) 12.72

MicroRNAs regulate brain morphogenesis in zebrafish. Science (2005) 11.16

New microRNAs from mouse and human. RNA (2003) 10.35

A combined computational-experimental approach predicts human microRNA targets. Genes Dev (2004) 9.82

A custom microarray platform for analysis of microRNA gene expression. Nat Methods (2004) 9.44

A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell (2005) 9.22

Pre-mRNA splicing and human disease. Genes Dev (2003) 9.13

The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proc Natl Acad Sci U S A (2005) 8.33

MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues. Genome Res (2004) 6.98

Short RNAs repress translation after initiation in mammalian cells. Mol Cell (2006) 6.70

Numerous microRNPs in neuronal cells containing novel microRNAs. RNA (2003) 6.28

Muscle-specific microRNA miR-206 promotes muscle differentiation. J Cell Biol (2006) 5.78

MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function. Proc Natl Acad Sci U S A (2005) 5.35

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol Cell Biol (2005) 5.03

The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nat Genet (2003) 4.97

Probing microRNAs with microarrays: tissue specificity and functional inference. RNA (2004) 4.91

Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev (1989) 4.53

Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth. Genes Dev (2005) 4.34

Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing. Genes Dev (1991) 4.28

Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol (2000) 4.12

Polypyrimidine tract binding protein antagonizes exon definition. Mol Cell Biol (2001) 4.10

hnRNP I, the polypyrimidine tract-binding protein: distinct nuclear localization and association with hnRNAs. Nucleic Acids Res (1992) 3.89

MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling. Proc Natl Acad Sci U S A (2005) 3.78

The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing. Mol Cell Biol (2001) 3.68

LNA-modified oligonucleotides mediate specific inhibition of microRNA function. Gene (2006) 3.49

A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing. Proc Natl Acad Sci U S A (2000) 3.11

A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. RNA (1997) 3.05

The polypyrimidine tract binding protein binds upstream of neural cell-specific c-src exon N1 to repress the splicing of the intron downstream. Mol Cell Biol (1997) 2.93

Protein modularity of alternatively spliced exons is associated with tissue-specific regulation of alternative splicing. PLoS Genet (2005) 2.63

Predicting and validating microRNA targets. Genome Biol (2004) 2.54

Polypyrimidine tract binding protein interacts with sequences involved in alternative splicing of beta-tropomyosin pre-mRNA. J Biol Chem (1992) 2.53

Expression profiling and identification of novel genes involved in myogenic differentiation. FASEB J (2003) 2.30

Novel modes of splicing repression by PTB. Trends Biochem Sci (2006) 2.27

Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing. Mol Cell (2002) 2.27

Role of an inhibitory pyrimidine element and polypyrimidine tract binding protein in repression of a regulated alpha-tropomyosin exon. RNA (1998) 2.18

Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex. Mol Cell (2005) 2.05

Polypyrimidine tract binding protein functions as a repressor to regulate alternative splicing of alpha-actinin mutally exclusive exons. Mol Cell Biol (1999) 2.02

Differential alternative splicing activity of isoforms of polypyrimidine tract binding protein (PTB). RNA (2001) 1.98

GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments. BMC Bioinformatics (2005) 1.83

Exon repression by polypyrimidine tract binding protein. RNA (2005) 1.81

Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB. RNA (1999) 1.78

The M-band: an elastic web that crosslinks thick filaments in the center of the sarcomere. Trends Cell Biol (2005) 1.67

Spatial regulation of microRNA gene expression in the Drosophila embryo. Proc Natl Acad Sci U S A (2005) 1.55

Isolation of a mammalian homologue of a fission yeast differentiation regulator. Mol Cell Biol (1999) 1.49

RNA pathogenesis of the myotonic dystrophies. Neuromuscul Disord (2004) 1.40

Cardiac tissue-specific repression of CELF activity disrupts alternative splicing and causes cardiomyopathy. Mol Cell Biol (2005) 1.35

Muscle-specific alternative splicing of myotubularin-related 1 gene is impaired in DM1 muscle cells. Hum Mol Genet (2002) 1.33

Comparative expression analysis of the genes encoding polypyrimidine tract binding protein (PTB) and its neural homologue (brPTB) in prenatal and postnatal mouse brain. Mech Dev (2001) 1.32

Expression and functional characteristics of calpain 3 isoforms generated through tissue-specific transcriptional and posttranscriptional events. Mol Cell Biol (1999) 1.31

Alternative extracellular and cytoplasmic domains of the integrin alpha 7 subunit are differentially expressed during development. J Biol Chem (1993) 1.23

Identification of two proteins that bind to a pyrimidine-rich sequence in the 3'-untranslated region of GAP-43 mRNA. Nucleic Acids Res (1997) 1.19

Molecular cloning and characterization of a new neuron-specific homologue of rat polypyrimidine tract binding protein. J Biochem (2000) 1.10

A novel polypyrimidine tract-binding protein paralog expressed in smooth muscle cells. J Biol Chem (2003) 1.08

Hephaestus encodes a polypyrimidine tract binding protein that regulates Notch signalling during wing development in Drosophila melanogaster. Development (2002) 1.07

Replacement of the muscle-specific sarcoplasmic reticulum Ca(2+)-ATPase isoform SERCA2a by the nonmuscle SERCA2b homologue causes mild concentric hypertrophy and impairs contraction-relaxation of the heart. Circ Res (2001) 1.06

Inhibition of myogenesis by transforming growth factor beta is density-dependent and related to the translocation of transcription factor MEF2 to the cytoplasm. Proc Natl Acad Sci U S A (1998) 1.02

Tuning smooth muscle contraction by molecular motors. J Mol Med (Berl) (2003) 0.95

Lineage-specific expression of polypyrimidine tract binding protein (PTB) in Drosophila embryos. Mech Dev (2002) 0.91

A cis-acting regulatory element that affects the alternative splicing of a muscle-specific exon in the mouse NCAM gene. Biochim Biophys Acta (1998) 0.90

Articles by these authors

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes Dev (2007) 5.83

MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA (2008) 5.78

Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science (2005) 5.14

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol Cell Biol (2005) 5.03

Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Mol Cell (2009) 4.71

Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions. Cell (2012) 4.10

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J (2005) 3.91

Neuronal regulation of alternative pre-mRNA splicing. Nat Rev Neurosci (2007) 3.45

Co-transcriptional splicing of constitutive and alternative exons. RNA (2009) 2.29

The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain. Nat Genet (2011) 2.10

Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex. Mol Cell (2005) 2.05

Protein kinase A phosphorylation modulates transport of the polypyrimidine tract-binding protein. Proc Natl Acad Sci U S A (2003) 2.02

Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome. Nat Struct Mol Biol (2008) 1.91

An inducible change in Fox-1/A2BP1 splicing modulates the alternative splicing of downstream neuronal target exons. Genes Dev (2009) 1.88

Exon repression by polypyrimidine tract binding protein. RNA (2005) 1.81

Differentiation-induced colocalization of the KH-type splicing regulatory protein with polypyrimidine tract binding protein and the c-src pre-mRNA. Mol Biol Cell (2003) 1.60

PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2. Nat Neurosci (2012) 1.58

A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators. Proc Natl Acad Sci U S A (2008) 1.56

Depolarization and CaM kinase IV modulate NMDA receptor splicing through two essential RNA elements. PLoS Biol (2007) 1.49

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol (2013) 1.49

The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function. Genes Dev (2012) 1.48

Sam68 regulates a set of alternatively spliced exons during neurogenesis. Mol Cell Biol (2008) 1.38

Autoregulation of Fox protein expression to produce dominant negative splicing factors. RNA (2009) 1.34

Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol (2003) 1.27

EGFR mutation-induced alternative splicing of Max contributes to growth of glycolytic tumors in brain cancer. Cell Metab (2013) 1.23

Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2. Crit Rev Biochem Mol Biol (2012) 1.20

Developmental control of CaV1.2 L-type calcium channel splicing by Fox proteins. Mol Cell Biol (2009) 1.20

A consensus CaMK IV-responsive RNA sequence mediates regulation of alternative exons in neurons. RNA (2005) 1.19

U1 snRNA directly interacts with polypyrimidine tract-binding protein during splicing repression. Mol Cell (2011) 1.18

Regulation of TRKB surface expression by brain-derived neurotrophic factor and truncated TRKB isoforms. J Biol Chem (2002) 1.14

Chromatin and epigenetic regulation of pre-mRNA processing. Hum Mol Genet (2012) 1.10

Alternative pre-mRNA splicing in neurons: growing up and extending its reach. Trends Genet (2013) 1.09

Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression. RNA (2013) 1.08

Regulation of the mutually exclusive exons 8a and 8 in the CaV1.2 calcium channel transcript by polypyrimidine tract-binding protein. J Biol Chem (2011) 1.01

The cardiotonic steroid digitoxin regulates alternative splicing through depletion of the splicing factors SRSF3 and TRA2B. RNA (2012) 1.00

Drosha-independent DGCR8/Pasha pathway regulates neuronal morphogenesis. Proc Natl Acad Sci U S A (2014) 0.90

Maps, codes, and sequence elements: can we predict the protein output from an alternatively spliced locus? Neuron (2006) 0.89

A role for polypyrimidine tract binding protein in the establishment of focal adhesions. Mol Cell Biol (2009) 0.88

A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing. Genome Res (2013) 0.85

Characterization of novel inhibitors of HIV-1 replication that function via alteration of viral RNA processing and rev function. Nucleic Acids Res (2013) 0.84

Pyrvinium pamoate changes alternative splicing of the serotonin receptor 2C by influencing its RNA structure. Nucleic Acids Res (2013) 0.82

MicroRNAs as components of systemic signaling pathways in Drosophila melanogaster. Curr Top Dev Biol (2013) 0.79

Splice isoforms of phosducin-like protein control the expression of heterotrimeric G proteins. J Biol Chem (2013) 0.79

Medium throughput analysis of alternative splicing by fluorescently labeled RT-PCR. Methods Mol Biol (2014) 0.76

RNA-binding protein PSPC1 promotes the differentiation-dependent nuclear export of adipocyte RNAs. J Clin Invest (2017) 0.75

Correction: The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation. Elife (2017) 0.75

Corrigendum: Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia. Nat Immunol (2017) 0.75