Published in Nucleic Acids Res on April 22, 2007
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res (2012) 6.21
Statistical issues in the analysis of Illumina data. BMC Bioinformatics (2008) 3.66
Replication of individual DNA molecules under electronic control using a protein nanopore. Nat Nanotechnol (2010) 2.33
probeCheck--a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol (2008) 1.85
Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. Proc Natl Acad Sci U S A (2009) 1.83
Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. PLoS One (2010) 1.77
Improving small-angle X-ray scattering data for structural analyses of the RNA world. RNA (2010) 1.60
Core structure of the U6 small nuclear ribonucleoprotein at 1.7-Å resolution. Nat Struct Mol Biol (2014) 1.56
IDT SciTools: a suite for analysis and design of nucleic acid oligomers. Nucleic Acids Res (2008) 1.37
Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. PLoS One (2008) 1.32
Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing. RNA (2013) 1.29
Precision is essential for efficient catalysis in an evolved Kemp eliminase. Nature (2013) 1.28
Dimethyl disulfide produced by the naturally associated bacterium bacillus sp B55 promotes Nicotiana attenuata growth by enhancing sulfur nutrition. Plant Cell (2013) 1.20
Design and validation of a microarray for detection, hemagglutinin subtyping, and pathotyping of avian influenza viruses. J Clin Microbiol (2008) 1.19
The utility of high-resolution melting analysis of SNP nucleated PCR amplicons--an MLST based Staphylococcus aureus typing scheme. PLoS One (2011) 1.18
Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins. Nucleic Acids Res (2010) 1.17
Diagnostic testing for IDH1 and IDH2 variants in acute myeloid leukemia an algorithmic approach using high-resolution melting curve analysis. J Mol Diagn (2011) 1.15
A survey of enabling technologies in synthetic biology. J Biol Eng (2013) 1.14
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. R Soc Open Sci (2015) 1.14
DICER1 hotspot mutations in non-epithelial gonadal tumours. Br J Cancer (2013) 1.13
BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. BMC Microbiol (2012) 1.10
Tool for quantification of staphylococcal enterotoxin gene expression in cheese. Appl Environ Microbiol (2010) 1.05
Strain prioritization for natural product discovery by a high-throughput real-time PCR method. J Nat Prod (2014) 1.03
Genotype-dependent variation of mitochondrial transcriptional profiles in interpopulation hybrids. Proc Natl Acad Sci U S A (2008) 1.03
Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.). BMC Genet (2012) 1.01
Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG. Appl Environ Microbiol (2013) 1.00
A nonlinear dynamic model of DNA with a sequence-dependent stacking term. Nucleic Acids Res (2009) 1.00
Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets. Proc Natl Acad Sci U S A (2012) 1.00
Simple and efficient synthesis of 5' pre-adenylated DNA using thermostable RNA ligase. Nucleic Acids Res (2011) 0.95
Precision-engineering the Pseudomonas aeruginosa genome with two-step allelic exchange. Nat Protoc (2015) 0.94
Interspecific sex in grass smuts and the genetic diversity of their pheromone-receptor system. PLoS Genet (2011) 0.94
High-level association of bovine digital dermatitis Treponema spp. with contagious ovine digital dermatitis lesions and presence of Fusobacterium necrophorum and Dichelobacter nodosus. J Clin Microbiol (2015) 0.92
NsrR from Streptomyces coelicolor is a nitric oxide-sensing [4Fe-4S] cluster protein with a specialized regulatory function. J Biol Chem (2015) 0.92
Reference genes for real-time PCR quantification of messenger RNAs and microRNAs in mouse model of obesity. PLoS One (2014) 0.91
Improved methods for capture, extraction, and quantitative assay of environmental DNA from Asian bigheaded carp (Hypophthalmichthys spp.). PLoS One (2014) 0.90
Identification and Differentiation of Verticillium Species and V. longisporum Lineages by Simplex and Multiplex PCR Assays. PLoS One (2013) 0.90
Apple juice intervention modulates expression of ARE-dependent genes in rat colon and liver. Eur J Nutr (2010) 0.89
Barcoding melting curve analysis for rapid, sensitive, and discriminating authentication of saffron (Crocus sativus L.) from its adulterants. Biomed Res Int (2014) 0.88
FungiQuant: a broad-coverage fungal quantitative real-time PCR assay. BMC Microbiol (2012) 0.88
Reference genes selection for quantitative real-time PCR using RankAggreg method in different tissues of Capra hircus. PLoS One (2013) 0.88
Iminohydantoin lesion induced in DNA by peracids and other epoxidizing oxidants. J Am Chem Soc (2009) 0.88
When naked became armored: an eight-gene phylogeny reveals monophyletic origin of theca in dinoflagellates. PLoS One (2012) 0.87
Biogeography of Paenibacillus larvae, the causative agent of American foulbrood, using a new multilocus sequence typing scheme. Environ Microbiol (2014) 0.87
In vitro enzymology of Cas9. Methods Enzymol (2014) 0.87
Detection of rifampicin resistance in Mycobacterium tuberculosis by padlock probes and magnetic nanobead-based readout. PLoS One (2013) 0.87
Hexahistidine-tag-specific optical probes for analyses of proteins and their interactions. Anal Biochem (2009) 0.87
Composite linkage map and enhanced genome map for Culex pipiens complex mosquitoes. J Hered (2013) 0.86
A vertically stacked, polymer, microfluidic point mutation analyzer: rapid high accuracy detection of low-abundance K-ras mutations. Anal Biochem (2011) 0.86
An assessment of karyotype restructuring in the neoallotetraploid Tragopogon miscellus (Asteraceae). Chromosome Res (2013) 0.86
Gemi: PCR primers prediction from multiple alignments. Comp Funct Genomics (2012) 0.86
Quantitative molecular detection of putative periodontal pathogens in clinically healthy and periodontally diseased subjects. PLoS One (2014) 0.86
One-electron reduction potential of the neutral guanyl radical in the GC base pair of duplex DNA. J Am Chem Soc (2009) 0.86
A parallel quadruplex DNA is bound tightly but unfolded slowly by pif1 helicase. J Biol Chem (2015) 0.85
De Novo Assembly of the Pea (Pisum sativum L.) Nodule Transcriptome. Int J Genomics (2015) 0.85
Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology. J Clin Microbiol (2015) 0.85
Identification of two GH18 chitinase family genes and their use as targets for detection of the crayfish-plague oomycete Aphanomyces astaci. BMC Microbiol (2009) 0.85
RNA-binding site of Escherichia coli peptidyl-tRNA hydrolase. J Biol Chem (2011) 0.85
The conjugative DNA translocase TrwB is a structure-specific DNA-binding protein. J Biol Chem (2010) 0.85
Molecular enumeration of an ecologically important cyanophage in a Laurentian Great Lake. Appl Environ Microbiol (2011) 0.85
Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands. Appl Environ Microbiol (2010) 0.85
Multiplex PCR identification of Taenia spp. in rodents and carnivores. Parasitol Res (2011) 0.84
Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples. Nucleic Acids Res (2013) 0.84
Characterizing the dynamics of the leader-linker interaction in the glycine riboswitch with site-directed spin labeling. Biochemistry (2014) 0.83
From deep sequencing to actual clones. Protein Eng Des Sel (2014) 0.83
Male sex interspecies divergence and down regulation of expression of spermatogenesis genes in Drosophila sterile hybrids. J Mol Evol (2010) 0.83
An evaluation of potential reference genes for stability of expression in two salmonid cell lines after infection with either Piscirickettsia salmonis or IPNV. BMC Res Notes (2010) 0.83
Application of equilibrium models of solution hybridization to microarray design and analysis. PLoS One (2010) 0.83
Novel strategy to evaluate infectious salmon anemia virus variants by high resolution melting. PLoS One (2012) 0.83
Refining DNA Barcoding Coupled High Resolution Melting for Discrimination of 12 Closely Related Croton Species. PLoS One (2015) 0.83
Fast and Accurate Large-Scale Detection of β-Lactamase Genes Conferring Antibiotic Resistance. Antimicrob Agents Chemother (2015) 0.82
Interaction map and selection of microRNA targets in Parkinson's disease-related genes. J Biomed Biotechnol (2009) 0.82
Genome-based microsatellite development in the Culex pipiens complex and comparative microsatellite frequency with Aedes aegypti and Anopheles gambiae. PLoS One (2010) 0.82
Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures. New Phytol (2015) 0.81
A Multiplex Real-Time PCR Assay to Diagnose and Separate Helicoverpa armigera and H. zea (Lepidoptera: Noctuidae) in the New World. PLoS One (2015) 0.81
IVA cloning: A single-tube universal cloning system exploiting bacterial In Vivo Assembly. Sci Rep (2016) 0.81
Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA. PLoS One (2017) 0.81
Detection of human papillomaviruses by polymerase chain reaction and ligation reaction on universal microarray. PLoS One (2012) 0.81
Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation. BMC Microbiol (2012) 0.81
Site specific replacements of a single loop nucleoside with a dibenzyl linker may switch the activity of TBA from anticoagulant to antiproliferative. Nucleic Acids Res (2015) 0.81
Chemical syntheses of oligodeoxyribonucleotides containing spore photoproduct. J Org Chem (2013) 0.81
Crystallographic capture of a radical S-adenosylmethionine enzyme in the act of modifying tRNA. Science (2016) 0.81
Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A. Appl Environ Microbiol (2013) 0.81
Isothermal loop-mediated amplification (LAMP) for diagnosis of contagious bovine pleuro-pneumonia. BMC Vet Res (2013) 0.81
Intraspecific Polymorphisms of Cytogenetic Markers Mapped on Chromosomes of Triticum polonicum L. PLoS One (2016) 0.80
In Vitro Reconstitution and Crystallization of Cas9 Endonuclease Bound to a Guide RNA and a DNA Target. Methods Enzymol (2015) 0.80
Measuring single-molecule DNA hybridization by active control of DNA in a nanopore. Biophys J (2011) 0.80
Functional fluorescent protein insertions in herpes simplex virus gB report on gB conformation before and after execution of membrane fusion. PLoS Pathog (2014) 0.80
Human Genomic Deletions Generated by SVA-Associated Events. Comp Funct Genomics (2012) 0.80
Identification of species by multiplex analysis of variable-length sequences. Nucleic Acids Res (2010) 0.80
Denaturing gradient gel electrophoresis (DGGE) as a powerful novel alternative for differentiation of epizootic ISA virus variants. PLoS One (2012) 0.80
Giving drought the cold shoulder: a relationship between drought tolerance and fall dormancy in an agriculturally important crop. AoB Plants (2014) 0.80
DNA hybridization detection with 100 zM sensitivity using piezoelectric plate sensors with an improved noise-reduction algorithm. Analyst (2014) 0.79
Design and evaluation of a unique RT-qPCR assay for diagnostic quality control assessment that is applicable to pathogen detection in three species of salmonid fish. BMC Vet Res (2013) 0.79
Differentiated, Promoter-specific Response of [4Fe-4S] NsrR DNA Binding to Reaction with Nitric Oxide. J Biol Chem (2016) 0.79
Molecular Detection of Schistosome Infections with a Disposable Microfluidic Cassette. PLoS Negl Trop Dis (2015) 0.79
DNA uracil repair initiated by the archaeal ExoIII homologue Mth212 via direct strand incision. Nucleic Acids Res (2009) 0.79
A complex genome-microRNA interplay in human mitochondria. Biomed Res Int (2015) 0.79
DNA-rescuable allosteric inhibition of aptamer II ligand affinity by aptamer I element in the shortened Vibrio cholerae glycine riboswitch. J Biochem (2014) 0.79
Endometrial receptivity defects and impaired implantation in diabetic NOD mice. Biol Reprod (2012) 0.79
Development of a D genome specific marker resource for diploid and hexaploid wheat. BMC Genomics (2015) 0.79
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol (1962) 41.99
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A (1998) 24.28
Predicting DNA duplex stability from the base sequence. Proc Natl Acad Sci U S A (1986) 21.73
BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res (2004) 15.43
Hybridization of synthetic oligodeoxyribonucleotides to phi chi 174 DNA: the effect of single base pair mismatch. Nucleic Acids Res (1979) 14.12
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry (1998) 9.75
A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes. J Biol Chem (1979) 5.32
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res (1996) 5.16
Predicting sequence-dependent melting stability of short duplex DNA oligomers. Biopolymers (1997) 2.45
Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics (2004) 1.54
dnaMATE: a consensus melting temperature prediction server for short DNA sequences. Nucleic Acids Res (2005) 1.27