Published in Genetics on May 04, 2007
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A (2009) 4.65
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics (2008) 4.25
A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs. PLoS Genet (2007) 3.61
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour (2015) 2.56
The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics (2007) 2.56
Population genetic structure of the people of Qatar. Am J Hum Genet (2010) 1.91
Independent origins of cultivated coconut (Cocos nucifera L.) in the old world tropics. PLoS One (2011) 1.78
A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae). BMC Plant Biol (2008) 1.75
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Candidate gene association mapping of Arabidopsis flowering time. Genetics (2009) 1.58
An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure. Genetics (2008) 1.52
Quantifying effects of environmental and geographical factors on patterns of genetic differentiation. Mol Ecol (2011) 1.42
Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan. PLoS One (2012) 1.42
Independent Origins of Yeast Associated with Coffee and Cacao Fermentation. Curr Biol (2016) 1.39
House mouse colonization patterns on the sub-Antarctic Kerguelen Archipelago suggest singular primary invasions and resilience against re-invasion. BMC Evol Biol (2010) 1.31
Nonmetric multidimensional scaling corrects for population structure in association mapping with different sample types. Genetics (2009) 1.25
Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq. G3 (Bethesda) (2013) 1.25
Challenges in analysis and interpretation of microsatellite data for population genetic studies. Ecol Evol (2014) 1.25
Evolutionary consequences of self-fertilization in plants. Proc Biol Sci (2013) 1.23
Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet. Genetics (2009) 1.22
Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evol Biol (2010) 1.18
Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand. ISME J (2011) 1.18
Role of social wasps in Saccharomyces cerevisiae ecology and evolution. Proc Natl Acad Sci U S A (2012) 1.17
Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards. Mol Ecol (2013) 1.17
Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis. Genetics (2008) 1.13
On identifying the optimal number of population clusters via the deviance information criterion. PLoS One (2011) 1.08
Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata. Genetics (2009) 1.08
Diversification and population structure in common beans (Phaseolus vulgaris L.). PLoS One (2012) 1.01
Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia. PLoS One (2011) 1.01
Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis. Evol Appl (2011) 1.01
Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources. PLoS One (2013) 1.01
Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici. PLoS Pathog (2014) 1.00
Natural colonization and adaptation of a mosquito species in Galapagos and its implications for disease threats to endemic wildlife. Proc Natl Acad Sci U S A (2009) 1.00
The genetic structure of wild Orobanche cumana Wallr. (Orobanchaceae) populations in eastern Bulgaria reflects introgressions from weedy populations. ScientificWorldJournal (2014) 0.99
Widespread horizontal genomic exchange does not erode species barriers among sympatric ducks. BMC Evol Biol (2012) 0.96
Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era. Evol Appl (2015) 0.95
Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia. Mol Ecol (2011) 0.95
Adaptive traits are maintained on steep selective gradients despite gene flow and hybridization in the intertidal zone. PLoS One (2011) 0.95
Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars. BMC Genomics (2014) 0.94
Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from different grape varieties and winemaking regions. PLoS One (2012) 0.93
Diverse spore rains and limited local exchange shape fern genetic diversity in a recently created habitat colonized by long-distance dispersal. Ann Bot (2012) 0.93
Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica. PLoS Pathog (2010) 0.93
Maintaining functional major histocompatibility complex diversity under inbreeding: the case of a selfing vertebrate. Proc Biol Sci (2012) 0.93
Genetic diversity and structure in two species of Leavenworthia with self-incompatible and self-compatible populations. Heredity (Edinb) (2010) 0.92
Genetic diversity and trait genomic prediction in a pea diversity panel. BMC Genomics (2015) 0.90
Floral and mating system divergence in secondary sympatry: testing an alternative hypothesis to reinforcement in Clarkia. Ann Bot (2013) 0.89
Ethnolinguistic structuring of sorghum genetic diversity in Africa and the role of local seed systems. Proc Natl Acad Sci U S A (2014) 0.88
Quantifying separation and similarity in a Saccharomyces cerevisiae metapopulation. ISME J (2014) 0.88
Evolutionary history of barley cultivation in Europe revealed by genetic analysis of extant landraces. BMC Evol Biol (2011) 0.88
Comparative genetic structure of two mangrove species in Caribbean and Pacific estuaries of Panama. BMC Evol Biol (2012) 0.87
ObStruct: a method to objectively analyse factors driving population structure using Bayesian ancestry profiles. PLoS One (2014) 0.87
On-farm dynamic management of genetic diversity: the impact of seed diffusions and seed saving practices on a population-variety of bread wheat. Evol Appl (2012) 0.87
Emerging paradigms in genomics-based crop improvement. ScientificWorldJournal (2013) 0.86
Population genetic structure in a social landscape: barley in a traditional Ethiopian agricultural system. Evol Appl (2013) 0.86
Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles. BMC Plant Biol (2012) 0.86
Escape to Ferality: The Endoferal Origin of Weedy Rice from Crop Rice through De-Domestication. PLoS One (2016) 0.86
Recent loss of self-incompatibility by degradation of the male component in allotetraploid Arabidopsis kamchatica. PLoS Genet (2012) 0.85
Assessing population genetic structure via the maximisation of genetic distance. Genet Sel Evol (2009) 0.84
Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula. BMC Evol Biol (2011) 0.83
Population structure and genetic diversity of native and invasive populations of Solanum rostratum (Solanaceae). PLoS One (2013) 0.83
Environmental diel variation, parasite loads, and local population structuring of a mixed-mating mangrove fish. Ecol Evol (2012) 0.83
Grafting versus seed propagated apricot populations: two main gene pools in Tunisia evidenced by SSR markers and model-based Bayesian clustering. Genetica (2010) 0.83
Evidence for isolation-by-habitat among populations of an epiphytic orchid species on a small oceanic island. PLoS One (2014) 0.83
Environmental variables explain genetic structure in a beetle-associated nematode. PLoS One (2014) 0.81
Waxy phenotype evolution in the allotetraploid cereal broomcorn millet: mutations at the GBSSI locus in their functional and phylogenetic context. Mol Biol Evol (2012) 0.81
Patterns of genetic diversity reveal multiple introductions and recurrent founder effects during range expansion in invasive populations of Geranium carolinianum (Geraniaceae). Heredity (Edinb) (2013) 0.81
Genetic differentiation and connectivity of morphological types of the broadcast-spawning coral Galaxea fascicularis in the Nansei Islands, Japan. Ecol Evol (2016) 0.80
Large-scale distribution of hybridogenetic lineages in a Spanish desert ant. Proc Biol Sci (2013) 0.80
Hybridization promotes color polymorphism in the aposematic harlequin poison frog, Oophaga histrionica. Ecol Evol (2013) 0.80
A novel and fast approach for population structure inference using kernel-PCA and optimization. Genetics (2014) 0.79
Genetic diversity and structure of natural populations of Gossypium mustelinum, a wild relative of cotton, in the basin of the De Contas River in Bahia, Brazil. Genetica (2014) 0.79
Association studies including genotype by environment interactions: prospects and limits. BMC Genet (2014) 0.79
Salinity Is an Agent of Divergent Selection Driving Local Adaptation of Arabidopsis to Coastal Habitats. Plant Physiol (2015) 0.78
Home Bodies and Wanderers: Sympatric Lineages of the Deep-Sea Black Coral Leiopathes glaberrima. PLoS One (2015) 0.78
Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient. Heredity (Edinb) (2012) 0.78
Population dynamics and evolutionary history of the weedy vine Ipomoea hederacea in North America. G3 (Bethesda) (2014) 0.78
Efficacy of population structure analysis with breeding populations and inbred lines. Genetica (2013) 0.78
Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type β in Reunion Island, South Western Indian Ocean. PLoS One (2017) 0.77
Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers. Genetica (2015) 0.77
Cellar-Associated Saccharomyces cerevisiae Population Structure Revealed High-Level Diversity and Perennial Persistence at Sauternes Wine Estates. Appl Environ Microbiol (2016) 0.77
High levels of effective long-distance dispersal may blur ecotypic divergence in a rare terrestrial orchid. BMC Ecol (2014) 0.77
DNA sequence variation of wild barley Hordeum spontaneum (L.) across environmental gradients in Israel. Heredity (Edinb) (2014) 0.77
Genetic differentiation and species cohesion in two widespread Central American Begonia species. Heredity (Edinb) (2013) 0.77
Multiple-geographic-scale genetic structure of two mangrove tree species: the roles of mating system, hybridization, limited dispersal and extrinsic factors. PLoS One (2015) 0.77
Genetic diversity and differentiation of Michelia maudiae (Magnoliaceae) revealed by nuclear and chloroplast microsatellite markers. Genetica (2012) 0.76
Population structure and comparative genome hybridization of European flor yeast reveal a unique group of Saccharomyces cerevisiae strains with few gene duplications in their genome. PLoS One (2014) 0.76
Genome-wide view of genetic diversity reveals paths of selection and cultivar differentiation in peach domestication. DNA Res (2016) 0.76
Inferring ancestry from population genomic data and its applications. Front Genet (2014) 0.76
Impact of Commercial Strain Use on Saccharomyces cerevisiae Population Structure and Dynamics in Pinot Noir Vineyards and Spontaneous Fermentations of a Canadian Winery. PLoS One (2016) 0.76
Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma. Genome Res (2016) 0.76
A Monte Carlo permutation test for random mating using genome sequences. PLoS One (2013) 0.75
Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. PeerJ (2016) 0.75
Limited Pollen Dispersal Contributes to Population Genetic Structure but Not Local Adaptation in Quercus oleoides Forests of Costa Rica. PLoS One (2015) 0.75
Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations. PLoS One (2017) 0.75
Association of Commercial Rice Varieties with Weedy Rice Accessions (Oryza sativa complex) in Pulau Pinang's Rice Granary Area. Trop Life Sci Res (2011) 0.75
Facultative asexual reproduction and genetic diversity of populations in the humivorous termite Cavitermes tuberosus. Proc Biol Sci (2016) 0.75
Method to represent the distribution of QTL additive and dominance effects associated with quantitative traits in computer simulation. BMC Bioinformatics (2016) 0.75
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Genetic structure of human populations. Science (2002) 30.91
Bayesian analysis of genetic differentiation between populations. Genetics (2003) 5.74
A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genet Res (2001) 5.61
Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization. Genetics (2000) 3.89
Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics (2006) 3.89
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A Dirichlet process model for detecting positive selection in protein-coding DNA sequences. Proc Natl Acad Sci U S A (2006) 1.47
Inferring recent outcrossing rates using multilocus individual heterozygosity: application to evolving wheat populations. Genetics (2000) 1.15
Evolution and functional impact of rare coding variation from deep sequencing of human exomes. Science (2012) 17.12
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
Genes mirror geography within Europe. Nature (2008) 14.23
Natural selection on protein-coding genes in the human genome. Nature (2005) 10.84
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet (2009) 9.16
Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet (2008) 8.92
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Demographic history and rare allele sharing among human populations. Proc Natl Acad Sci U S A (2011) 7.36
Ascertainment bias in studies of human genome-wide polymorphism. Genome Res (2005) 6.63
Proportionally more deleterious genetic variation in European than in African populations. Nature (2008) 6.61
Genomic scans for selective sweeps using SNP data. Genome Res (2005) 6.43
Simultaneous inference of selection and population growth from patterns of variation in the human genome. Proc Natl Acad Sci U S A (2005) 5.94
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc Natl Acad Sci U S A (2009) 5.39
Localizing recent adaptive evolution in the human genome. PLoS Genet (2007) 5.11
An Aboriginal Australian genome reveals separate human dispersals into Asia. Science (2011) 4.84
The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research. Am J Hum Genet (2008) 4.79
Patterns of positive selection in six Mammalian genomes. PLoS Genet (2008) 4.69
A single IGF1 allele is a major determinant of small size in dogs. Science (2007) 4.68
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A (2009) 4.65
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature (2010) 4.64
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The functional spectrum of low-frequency coding variation. Genome Biol (2011) 4.42
Molecular and evolutionary history of melanism in North American gray wolves. Science (2009) 3.87
Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet (2007) 3.83
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs. PLoS Genet (2007) 3.61
Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proc Natl Acad Sci U S A (2011) 3.53
A simple genetic architecture underlies morphological variation in dogs. PLoS Biol (2010) 3.46
An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs. Science (2009) 3.29
Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations. Proc Natl Acad Sci U S A (2010) 3.20
Phased whole-genome genetic risk in a family quartet using a major allele reference sequence. PLoS Genet (2011) 3.20
New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nat Commun (2012) 3.18
Darwinian and demographic forces affecting human protein coding genes. Genome Res (2009) 3.01
Great ape genetic diversity and population history. Nature (2013) 2.95
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Res (2009) 2.76
Coat variation in the domestic dog is governed by variants in three genes. Science (2009) 2.70
Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics (2005) 2.65
Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques. Science (2007) 2.62
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol Biol Evol (2007) 2.56
Molecular evidence for a single evolutionary origin of domesticated rice. Proc Natl Acad Sci U S A (2011) 2.53
Genomic ancestry of North Africans supports back-to-Africa migrations. PLoS Genet (2012) 2.51
Natural selection on genes that underlie human disease susceptibility. Curr Biol (2008) 2.49
Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genet (2007) 2.45
Natural selection on the olfactory receptor gene family in humans and chimpanzees. Am J Hum Genet (2003) 2.44
Complex population structure in African village dogs and its implications for inferring dog domestication history. Proc Natl Acad Sci U S A (2009) 2.42
Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection. J Mol Evol (2003) 2.39
A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res (2011) 2.28
Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation. PLoS Genet (2010) 2.14
Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. Science (2013) 2.00
Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence. PLoS Genet (2009) 1.97
Selective sweep mapping of genes with large phenotypic effects. Genome Res (2005) 1.95
Population genetics of polymorphism and divergence for diploid selection models with arbitrary dominance. Genetics (2004) 1.83
RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am J Hum Genet (2013) 1.82
Linkage disequilibrium and demographic history of wild and domestic canids. Genetics (2009) 1.79
The genetic prehistory of southern Africa. Nat Commun (2012) 1.78
Gene flow from North Africa contributes to differential human genetic diversity in southern Europe. Proc Natl Acad Sci U S A (2013) 1.77
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Detecting and annotating genetic variations using the HugeSeq pipeline. Nat Biotechnol (2012) 1.72
Exploring population genetic models with recombination using efficient forward-time simulations. Genetics (2008) 1.72
Molecular evidence for an activator-inhibitor mechanism in development of embryonic feather branching. Proc Natl Acad Sci U S A (2005) 1.69
Targets of balancing selection in the human genome. Mol Biol Evol (2009) 1.69
Reconstructing the population genetic history of the Caribbean. PLoS Genet (2013) 1.68
Reaction-diffusion models of within-feather pigmentation patterning. Proc Biol Sci (2002) 1.65
Type 2 diabetes risk alleles demonstrate extreme directional differentiation among human populations, compared to other diseases. PLoS Genet (2012) 1.55
High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environ (2012) 1.53
On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations. Genetics (2007) 1.53
Variation of BMP3 contributes to dog breed skull diversity. PLoS Genet (2012) 1.49
Biomechanical evaluation of the less invasive stabilization system, angled blade plate, and retrograde intramedullary nail for the internal fixation of distal femur fractures. J Orthop Trauma (2004) 1.46
Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta). PLoS Genet (2009) 1.43
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PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Hum Biol (2012) 1.37
A composite-likelihood approach for detecting directional selection from DNA sequence data. Genetics (2005) 1.37
Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Mol Biol Evol (2012) 1.29
Retracted Darwinian selection on a selfing locus. Science (2004) 1.29
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol (2013) 1.26
Selection on rapidly evolving proteins in the Arabidopsis genome. Genetics (2003) 1.25
Evaluating signatures of sex-specific processes in the human genome. Nat Genet (2009) 1.21
The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis. PLoS Genet (2010) 1.20
Population genetics of polymorphism and divergence under fluctuating selection. Genetics (2007) 1.18
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinformatics (2010) 1.16
Fine-scale population structure and the era of next-generation sequencing. Hum Mol Genet (2010) 1.12
Detecting coevolving amino acid sites using Bayesian mutational mapping. Bioinformatics (2005) 1.11
A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients. Mol Biol Evol (2004) 1.11
Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans. Mol Biol Evol (2007) 1.11
On identifying the optimal number of population clusters via the deviance information criterion. PLoS One (2011) 1.08
A population genetic approach to mapping neurological disorder genes using deep resequencing. PLoS Genet (2011) 1.07
SNP identification, verification, and utility for population genetics in a non-model genus. BMC Genet (2010) 1.07
North African Jewish and non-Jewish populations form distinctive, orthogonal clusters. Proc Natl Acad Sci U S A (2012) 1.05
Limited evidence for classic selective sweeps in African populations. Genetics (2012) 1.04
Melanesian blond hair is caused by an amino acid change in TYRP1. Science (2012) 1.01
Analysis of the genetic basis of disease in the context of worldwide human relationships and migration. PLoS Genet (2013) 1.01
Linking dynamical and population genetic models of persistent viral infection. Am Nat (2003) 1.00
Successful computational prediction of novel imprinted genes from epigenomic features. Mol Cell Biol (2010) 1.00
An ADAM9 mutation in canine cone-rod dystrophy 3 establishes homology with human cone-rod dystrophy 9. Mol Vis (2010) 0.99
Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach. Genetics (2010) 0.98
Factors associated with degree of atopy in Latino children in a nationwide pediatric sample: the Genes-environments and Admixture in Latino Asthmatics (GALA II) study. J Allergy Clin Immunol (2013) 0.97