Published in Eukaryot Cell on November 02, 2007
Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing. J Biol Chem (2010) 0.92
Nucleolar localization of RNA binding proteins induced by actinomycin D and heat shock in Trypanosoma cruzi. PLoS One (2011) 0.90
Basal splicing factors regulate the stability of mature mRNAs in trypanosomes. J Biol Chem (2013) 0.88
Small nucleolar RNA interference in Trypanosoma brucei: mechanism and utilization for elucidating the function of snoRNAs. Nucleic Acids Res (2010) 0.84
Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes. BMC Bioinformatics (2008) 0.84
Paromomycin affects translation and vesicle-mediated trafficking as revealed by proteomics of paromomycin -susceptible -resistant Leishmania donovani. PLoS One (2011) 0.84
Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei. RNA Biol (2014) 0.83
RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs. Nucleic Acids Res (2011) 0.82
A comparative genome-wide study of ncRNAs in trypanosomatids. BMC Genomics (2010) 0.78
Genome-wide analysis of small nucleolar RNAs of Leishmania major reveals a rich repertoire of RNAs involved in modification and processing of rRNA. RNA Biol (2015) 0.78
Characterizing ncRNAs in Human Pathogenic Protists Using High-Throughput Sequencing Technology. Front Genet (2011) 0.77
A tRNA methyltransferase paralog is important for ribosome stability and cell division in Trypanosoma brucei. Sci Rep (2016) 0.76
A pseudouridylation switch in rRNA is implicated in ribosome function during the life cycle of Trypanosoma brucei. Sci Rep (2016) 0.75
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell (1997) 10.71
Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet (1999) 8.72
Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell (1996) 7.92
Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell (2002) 6.62
The expanding snoRNA world. Biochimie (2002) 6.10
Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell (1997) 5.60
Inhibition of Trypanosoma brucei gene expression by RNA interference using an integratable vector with opposing T7 promoters. J Biol Chem (2000) 4.96
The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast. EMBO J (1991) 4.93
Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol (1990) 4.84
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell (1993) 4.68
Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol (1997) 4.52
Biogenesis of small nucleolar ribonucleoproteins. Curr Opin Cell Biol (2002) 4.28
Guided tours: from precursor snoRNA to functional snoRNP. Curr Opin Cell Biol (1999) 3.88
RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem (2002) 3.59
Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol Cell Biol (1993) 3.47
Three small RNAs within the 10 kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs. Nucleic Acids Res (1986) 3.30
Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol Cell Biol (1993) 3.29
The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc Natl Acad Sci U S A (1994) 2.68
Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA (1999) 2.48
Evolutionary conservation of the human nucleolar protein fibrillarin and its functional expression in yeast. J Cell Biol (1991) 2.39
Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP. Mol Cell Biol (2002) 2.37
Guiding ribose methylation of rRNA. Trends Biochem Sci (1997) 2.20
Biogenesis of small nuclear RNPs. J Cell Sci (2004) 2.17
Synthesis and assembly of the box C+D small nucleolar RNPs. Mol Cell Biol (2000) 2.11
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc Natl Acad Sci U S A (2002) 2.07
Nop5p is a small nucleolar ribonucleoprotein component required for pre-18 S rRNA processing in yeast. J Biol Chem (1998) 2.06
Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex. Mol Cell (2003) 1.94
U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing. Genes Dev (1995) 1.87
Efficient RNA 2'-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs. EMBO J (2003) 1.72
Precise identification of cleavage sites involved in the unusual processing of trypanosome ribosomal RNA. J Mol Biol (1987) 1.68
Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP. Chem Biol (2002) 1.58
Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes. Nucleic Acids Res (2005) 1.56
Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes. Annu Rev Biochem (2001) 1.55
Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J (2002) 1.51
Mapping 2'-O-methyl groups in ribosomal RNA. Methods (2001) 1.44
Biological applications of support vector machines. Brief Bioinform (2004) 1.41
Identification of the first trypanosome H/ACA RNA that guides pseudouridine formation on rRNA. J Biol Chem (2001) 1.39
Mapping of pseudouridine residues in RNA to nucleotide resolution. Methods Mol Biol (1998) 1.32
The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA. RNA (2002) 1.25
Silencing of Sm proteins in Trypanosoma brucei by RNA interference captured a novel cytoplasmic intermediate in spliced leader RNA biogenesis. J Biol Chem (2003) 1.22
Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J Mol Biol (2003) 1.22
Fibrillarin is essential for early development and required for accumulation of an intron-encoded small nucleolar RNA in the mouse. Mol Cell Biol (2003) 1.17
Phylogenetic analysis of the structure of RNase MRP RNA in yeasts. RNA (2002) 1.14
Two 5'-ETS regions implicated in interactions with U3 snoRNA are required for small subunit rRNA maturation in Trypanosoma brucei. Nucleic Acids Res (1999) 1.12
RNA B is the major nucleolar trimethylguanosine-capped small nuclear RNA associated with fibrillarin and pre-rRNAs in Trypanosoma brucei. Mol Cell Biol (1993) 1.11
The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA. Nucleic Acids Res (2000) 1.08
Species specificity in ribosome biogenesis: a nonconserved phosphoprotein is required for formation of the large ribosomal subunit in Trypanosoma brucei. Eukaryot Cell (2005) 1.07
Expression studies on clustered trypanosomatid box C/D small nucleolar RNAs. J Biol Chem (2001) 1.07
Three small nucleolar RNAs identified from the spliced leader-associated RNA locus in kinetoplastid protozoans. Mol Cell Biol (1998) 1.07
Protein-protein and protein-RNA contacts both contribute to the 15.5K-mediated assembly of the U4/U6 snRNP and the box C/D snoRNPs. Mol Cell Biol (2006) 1.07
Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions. Int J Parasitol (2004) 1.04
The ribosomal RNA of the trypanosomatid protozoan Crithidia fasciculata: physical characteristics and methylated sequences. Can J Biochem (1979) 1.04
Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray. Nucleic Acids Res (2006) 1.03
Recent progress of structural biology of tRNA processing and modification. Mol Cells (2005) 0.99
Fibrillarin-associated box C/D small nucleolar RNAs in Trypanosoma brucei. Sequence conservation and implications for 2'-O-ribose methylation of rRNA. J Biol Chem (2000) 0.99
The SLA RNA gene of Trypanosoma brucei is organized in a tandem array which encodes several small RNAs. Mol Biochem Parasitol (1996) 0.96
Elucidating the role of H/ACA-like RNAs in trans-splicing and rRNA processing via RNA interference silencing of the Trypanosoma brucei CBF5 pseudouridine synthase. J Biol Chem (2005) 0.95
Distinct regions of U3 snoRNA interact at two sites within the 5' external transcribed spacer of pre-rRNAs in Trypanosoma brucei cells. Nucleic Acids Res (1998) 0.95
Analysis of spliceosomal complexes in Trypanosoma brucei and silencing of two splicing factors Prp31 and Prp43. Mol Biochem Parasitol (2005) 0.94
Trypanosoma brucei 5'ETS A'-cleavage is directed by 3'-adjacent sequences, but not two U3 snoRNA-binding elements, which are all required for subsequent pre-small subunit rRNA processing events. J Mol Biol (2001) 0.91
Genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Leishmania major indicates conservation among trypanosomatids in the repertoire and in their rRNA targets. Eukaryot Cell (2006) 0.88
Characterization of a novel trypanosomatid small nucleolar RNA. Nucleic Acids Res (1998) 0.86
Secondary structure probing of the human RNase MRP RNA reveals the potential for MRP RNA subsets. Biochem Biophys Res Commun (2005) 0.83
Small nucleolar RNA clusters in trypanosomatid Leptomonas collosoma. Genome organization, expression studies, and the potential role of sequences present upstream from the first repeated cluster. J Biol Chem (2003) 0.83
A large collection of compact box C/D snoRNAs and their isoforms in Euglena gracilis: structural, functional and evolutionary insights. J Mol Biol (2006) 0.82
The genome of the kinetoplastid parasite, Leishmania major. Science (2005) 8.64
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature (2012) 7.00
GeneCards Version 3: the human gene integrator. Database (Oxford) (2010) 6.05
trans and cis splicing in trypanosomatids: mechanism, factors, and regulation. Eukaryot Cell (2003) 2.91
The shaping and functional consequences of the microRNA landscape in breast cancer. Nature (2013) 2.22
The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution. PLoS Pathog (2010) 2.15
NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression. EMBO J (2011) 2.09
Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing. Nat Protoc (2013) 1.91
Natural killer cell education in mice with single or multiple major histocompatibility complex class I molecules. J Exp Med (2005) 1.76
IgTree: creating Immunoglobulin variable region gene lineage trees. J Immunol Methods (2008) 1.58
Scanning electron microscopy of cells and tissues under fully hydrated conditions. Proc Natl Acad Sci U S A (2004) 1.57
Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy. Nucleic Acids Res (2009) 1.27
The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA. RNA (2002) 1.25
The trypanosomatid signal recognition particle consists of two RNA molecules, a 7SL RNA homologue and a novel tRNA-like molecule. J Biol Chem (2003) 1.23
A tale of two tails: why are terminal residues of proteins exposed? Bioinformatics (2007) 1.22
Silencing of Sm proteins in Trypanosoma brucei by RNA interference captured a novel cytoplasmic intermediate in spliced leader RNA biogenesis. J Biol Chem (2003) 1.22
RNA interference of signal peptide-binding protein SRP54 elicits deleterious effects and protein sorting defects in trypanosomes. J Biol Chem (2002) 1.20
Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA (2009) 1.19
ALA induced photodynamic effects on gram positive and negative bacteria. Photochem Photobiol Sci (2004) 1.16
A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain. Environ Microbiol (2014) 1.14
Scaling law in sizes of protein sequence families: from super-families to orphan genes. Proteins (2003) 1.13
Persistent ER stress induces the spliced leader RNA silencing pathway (SLS), leading to programmed cell death in Trypanosoma brucei. PLoS Pathog (2010) 1.13
On the role of exon and intron sequences in trans-splicing utilization and cap 4 modification of the trypanosomatid Leptomonas collosoma SL RNA. J Biol Chem (2002) 1.11
Small nucleolar RNA interference induced by antisense or double-stranded RNA in trypanosomatids. Proc Natl Acad Sci U S A (2003) 1.06
Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study. Bioinformatics (2007) 1.05
Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions. Int J Parasitol (2004) 1.04
Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei. RNA (2006) 1.03
Identification and functional characterization of lsm proteins in Trypanosoma brucei. J Biol Chem (2004) 1.02
Spliced-leader RNA silencing: a novel stress-induced mechanism in Trypanosoma brucei. EMBO Rep (2007) 1.02
The Trypanosoma brucei signal recognition particle lacks the Alu-domain-binding proteins: purification and functional analysis of its binding proteins by RNAi. J Cell Sci (2005) 1.00
Swaps in protein sequences. Proteins (2002) 0.98
Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR). RNA (2013) 0.98
Analysing the origin of long-range interactions in proteins using lattice models. BMC Struct Biol (2009) 0.97
Designing an A* algorithm for calculating edit distance between rooted-unordered trees. J Comput Biol (2006) 0.97
Natural killer cell tolerance persists despite significant reduction of self MHC class I on normal target cells in mice. PLoS One (2010) 0.96
Identification of the heptameric Lsm complex that binds U6 snRNA in Trypanosoma brucei. Mol Biochem Parasitol (2008) 0.95
Elucidating the role of H/ACA-like RNAs in trans-splicing and rRNA processing via RNA interference silencing of the Trypanosoma brucei CBF5 pseudouridine synthase. J Biol Chem (2005) 0.95
Families of H/ACA ncRNA molecules in trypanosomatids. RNA Biol (2009) 0.94
Blocking variant surface glycoprotein synthesis in Trypanosoma brucei triggers a general arrest in translation initiation. PLoS One (2009) 0.94
Composition bias and the origin of ORFan genes. Bioinformatics (2010) 0.94
Analysis of spliceosomal complexes in Trypanosoma brucei and silencing of two splicing factors Prp31 and Prp43. Mol Biochem Parasitol (2005) 0.94
The long non-coding RNA ERIC is regulated by E2F and modulates the cellular response to DNA damage. Mol Cancer (2013) 0.93
Probing natural killer cell education by Ly49 receptor expression analysis and computational modelling in single MHC class I mice. PLoS One (2009) 0.93
Establishment of an in vitro trans-splicing system in Trypanosoma brucei that requires endogenous spliced leader RNA. Nucleic Acids Res (2010) 0.93
Migration of renal carcinoma cells is dependent on protein kinase Cdelta via beta1 integrin and focal adhesion kinase. Int J Oncol (2008) 0.92
Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing. J Biol Chem (2010) 0.92
Trypanosome spliced-leader-associated RNA (SLA1) localization and implications for spliced-leader RNA biogenesis. Eukaryot Cell (2008) 0.91
The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. Nucleic Acids Res (2013) 0.90
Low folding propensity and high translation efficiency distinguish in vivo substrates of GroEL from other Escherichia coli proteins. Bioinformatics (2007) 0.89
What distinguishes GroEL substrates from other Escherichia coli proteins? FEBS J (2012) 0.89
RNAi interference of XPO1 and Sm genes and their effect on the spliced leader RNA in Trypanosoma brucei. Mol Biochem Parasitol (2006) 0.89
Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors. Development (2012) 0.89
Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks. Bioinformatics (2012) 0.89
Role of protein translocation pathways across the endoplasmic reticulum in Trypanosoma brucei. J Biol Chem (2008) 0.89
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules. BMC Bioinformatics (2007) 0.89
Basal splicing factors regulate the stability of mature mRNAs in trypanosomes. J Biol Chem (2013) 0.88
Genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Leishmania major indicates conservation among trypanosomatids in the repertoire and in their rRNA targets. Eukaryot Cell (2006) 0.88
Yeast linker histone Hho1p is required for efficient RNA polymerase I processivity and transcriptional silencing at the ribosomal DNA. Proc Natl Acad Sci U S A (2008) 0.87
Genome-wide computational determination of the human metalloproteome. Proteins (2015) 0.86
Trade-off between positive and negative design of protein stability: from lattice models to real proteins. PLoS Comput Biol (2009) 0.86
'RNA walk' a novel approach to study RNA-RNA interactions between a small RNA and its target. Nucleic Acids Res (2009) 0.85
Functional characterization and protein-protein interactions of trypanosome splicing factors U2AF35, U2AF65 and SF1. Mol Biochem Parasitol (2009) 0.85
High-throughput marker discovery in melon using a self-designed oligo microarray. BMC Genomics (2010) 0.84
Small nucleolar RNA interference in Trypanosoma brucei: mechanism and utilization for elucidating the function of snoRNAs. Nucleic Acids Res (2010) 0.84
Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes. BMC Bioinformatics (2008) 0.84
Simulations of the NK cell immune synapse reveal that activation thresholds can be established by inhibitory receptors acting locally. J Immunol (2011) 0.83