Published in FEMS Microbiol Ecol on December 01, 2007
Diverse antibiotic resistance genes in dairy cow manure. MBio (2014) 1.86
Disturbance and change in biodiversity. Philos Trans R Soc Lond B Biol Sci (2010) 1.24
IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes. Front Microbiol (2012) 1.16
Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization. Proc Natl Acad Sci U S A (2014) 0.98
Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazine. Appl Environ Microbiol (2011) 0.97
Streptomycin application has no detectable effect on bacterial community structure in apple orchard soil. Appl Environ Microbiol (2013) 0.83
Abundance and dynamics of antibiotic resistance genes and integrons in lake sediment microcosms. PLoS One (2014) 0.80
Enhanced antibiotic multi-resistance in nasal and faecal bacteria after agricultural use of streptomycin. Environ Microbiol (2012) 0.77
Influence of Chicken Manure Fertilization on Antibiotic-Resistant Bacteria in Soil and the Endophytic Bacteria of Pakchoi. Int J Environ Res Public Health (2016) 0.75
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol (2009) 4.29
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A (2011) 3.25
Influence of freeze-thaw stress on the structure and function of microbial communities and denitrifying populations in soil. Appl Environ Microbiol (2006) 2.28
Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol (2011) 2.01
Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J (2009) 1.98
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology (2002) 1.97
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Niche specialization of terrestrial archaeal ammonia oxidizers. Proc Natl Acad Sci U S A (2011) 1.72
Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl Environ Microbiol (2002) 1.69
Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months. Environ Microbiol (2007) 1.60
Significance test for comparing complex microbial community fingerprints using pairwise similarity measures. J Microbiol Methods (2004) 1.51
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Appl Environ Microbiol (2003) 1.50
Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol Ecol (2006) 1.49
Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars. Appl Environ Microbiol (2009) 1.40
Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl Environ Microbiol (2002) 1.38
Plasmids foster diversification and adaptation of bacterial populations in soil. FEMS Microbiol Rev (2012) 1.35
Bacillus and Streptomyces were selected as broad-spectrum antagonists against soilborne pathogens from arid areas in Egypt. FEMS Microbiol Lett (2013) 1.31
Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids. FEMS Microbiol Ecol (2008) 1.28
Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results? J Microbiol Methods (2007) 1.26
Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl Environ Microbiol (2003) 1.25
General relationships between abiotic soil properties and soil biota across spatial scales and different land-use types. PLoS One (2012) 1.25
Activity profiling of ectomycorrhiza communities in two forest soils using multiple enzymatic tests. New Phytol (2005) 1.25
Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield. ISME J (2010) 1.24
Effects of the inoculant strain Pseudomonas putida KT2442 (pNF142) and of naphthalene contamination on the soil bacterial community. FEMS Microbiol Ecol (2005) 1.24
Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality. Nature (2016) 1.21
Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol (2008) 1.21
Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl Environ Microbiol (2005) 1.21
PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa. FEMS Microbiol Ecol (2011) 1.20
Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community. FEMS Microbiol Ecol (2000) 1.19
The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site. FEMS Microbiol Ecol (2006) 1.16
A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Methods (2006) 1.16
IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes. Front Microbiol (2012) 1.16
Exploring the diversity of bacterial communities in sediments of urban mangrove forests. FEMS Microbiol Ecol (2008) 1.15
Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. Environ Microbiol (2007) 1.14
Genetic diversity and phylogenetic relationships of bacteria belonging to the Ochrobactrum-Brucella group by recA and 16S rRNA gene-based comparative sequence analysis. Syst Appl Microbiol (2008) 1.14
Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants. Environ Microbiol (2006) 1.14
Genetic and phenotypic microdiversity of Ochrobactrum spp. FEMS Microbiol Ecol (2006) 1.13
Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manure. Res Microbiol (2009) 1.13
Microbial colonization of beech and spruce litter--influence of decomposition site and plant litter species on the diversity of microbial community. Microb Ecol (2006) 1.13
Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing. FEMS Microbiol Ecol (2012) 1.11
Influence of humans on evolution and mobilization of environmental antibiotic resistome. Emerg Infect Dis (2013) 1.10
RNA fingerprinting--a new method to screen for differences in plant litter degrading microbial communities. J Microbiol Methods (2004) 1.09
Breaking the DNA-binding code of Ralstonia solanacearum TAL effectors provides new possibilities to generate plant resistance genes against bacterial wilt disease. New Phytol (2013) 1.08
Increased abundance of IncP-1beta plasmids and mercury resistance genes in mercury-polluted river sediments: first discovery of IncP-1beta plasmids with a complex mer transposon as the sole accessory element. Appl Environ Microbiol (2006) 1.08
Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes. Res Microbiol (2009) 1.08
Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil. FEMS Microbiol Ecol (2009) 1.08
Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure. ISME J (2007) 1.06
Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing. PLoS One (2012) 1.05
Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods. FEMS Microbiol Ecol (2006) 1.04
Genotyping of Ochrobactrum anthropi by recA-based comparative sequence, PCR-RFLP, and 16S rRNA gene analysis. FEMS Microbiol Lett (2006) 1.04
Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS One (2010) 1.04
Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Appl Environ Microbiol (2012) 1.04
Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiol Ecol (2007) 1.03
Alterations in soil microbial activity and N-transformation processes due to sulfadiazine loads in pig-manure. Environ Pollut (2007) 1.03
Traditional cattle manure application determines abundance, diversity and activity of methanogenic Archaea in arable European soil. Environ Microbiol (2007) 1.02
Nitrogen turnover in soil and global change. FEMS Microbiol Ecol (2011) 1.00
Recurrent soil freeze-thaw cycles enhance grassland productivity. New Phytol (2007) 1.00
Diversity of ndo genes in mangrove sediments exposed to different sources of polycyclic aromatic hydrocarbon pollution. Appl Environ Microbiol (2007) 1.00
In vitro antagonists of Rhizoctonia solani tested on lettuce: rhizosphere competence, biocontrol efficiency and rhizosphere microbial community response. FEMS Microbiol Ecol (2009) 1.00
Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae kleb. Appl Environ Microbiol (2005) 0.99
Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems. Appl Environ Microbiol (2009) 0.99
Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. FEMS Microbiol Ecol (2010) 0.99
Comparative sequence analysis of the internal transcribed spacer 1 of Ochrobactrum species. Syst Appl Microbiol (2005) 0.97
Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazine. Appl Environ Microbiol (2011) 0.97
Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microb Ecol (2007) 0.97
A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. J Microbiol Methods (2005) 0.96
Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol (2002) 0.96
Phospholipid etherlipid and phospholipid fatty acid fingerprints in selected euryarchaeotal monocultures for taxonomic profiling. FEMS Microbiol Lett (2002) 0.96
Endophytic root colonization of gramineous plants by Herbaspirillum frisingense. FEMS Microbiol Ecol (2008) 0.96
Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community. FEMS Microbiol Ecol (2006) 0.96
Response of the abundance of key soil microbial nitrogen-cycling genes to multi-factorial global changes. PLoS One (2013) 0.96
Differences in amplification efficiency of standard curves in quantitative real-time PCR assays and consequences for gene quantification in environmental samples. J Microbiol Methods (2010) 0.96
Influence of different Sinorhizobium meliloti inocula on abundance of genes involved in nitrogen transformations in the rhizosphere of alfalfa (Medicago sativa L.). Environ Microbiol (2008) 0.95
Increased abundance and transferability of resistance genes after field application of manure from sulfadiazine-treated pigs. Appl Environ Microbiol (2013) 0.95
Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty. FEMS Microbiol Ecol (2008) 0.95
Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments. ISME J (2012) 0.95
Changes in diversity and functional gene abundances of microbial communities involved in nitrogen fixation, nitrification, and denitrification in a tidal wetland versus paddy soils cultivated for different time periods. Appl Environ Microbiol (2011) 0.95
Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One (2013) 0.95
Abundance and diversity of CO2-fixing bacteria in grassland soils close to natural carbon dioxide springs. Microb Ecol (2008) 0.94
Repeat domain diversity of avrBs3-like genes in Ralstonia solanacearum strains and association with host preferences in the field. Appl Environ Microbiol (2007) 0.93