Published in Environ Microbiol on December 13, 2007
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J (2009) 3.84
Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiol Mol Biol Rev (2011) 1.74
A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. PLoS One (2013) 1.11
Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny. ISME J (2013) 0.99
Soil microbial communities associated with Douglas-fir and red alder stands at high- and low-productivity forest sites in Oregon, USA. Microb Ecol (2010) 0.94
Soil, but not cultivar, shapes the structure of arbuscular mycorrhizal fungal assemblages associated with strawberry. Microb Ecol (2011) 0.91
Distinctive bacterial communities in the rhizoplane of four tropical tree species. Microb Ecol (2012) 0.84
Effect of tree species and mycorrhizal colonization on the archaeal population of boreal forest rhizospheres. Appl Environ Microbiol (2008) 0.80
Much beyond Mantel: bringing Procrustes association metric to the plant and soil ecologist's toolbox. PLoS One (2014) 0.78
Crop genotype and a novel symbiotic fungus influences the root endophytic colonization potential of plant growth promoting rhizobacteria. Physiol Mol Biol Plants (2009) 0.77
Interaction of Piriformospora indica with Azotobacter chroococcum. Sci Rep (2015) 0.76
Pseudomonas fluorescens C7R12 type III secretion system impacts mycorrhization of Medicago truncatula and associated microbial communities. Mycorrhiza (2016) 0.75
Effects of picoxystrobin and 4-n-nonylphenol on soil microbial community structure and respiration activity. PLoS One (2013) 0.75
TRFLP analysis reveals that fungi rather than bacteria are associated with premature yeast flocculation in brewing. J Ind Microbiol Biotechnol (2012) 0.75
The role of ecological theory in microbial ecology. Nat Rev Microbiol (2007) 4.50
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol (2008) 3.34
The ecological coherence of high bacterial taxonomic ranks. Nat Rev Microbiol (2010) 2.80
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol (2008) 2.68
Extensive fungal diversity in plant roots. Science (2002) 2.65
Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiol Ecol (2008) 2.36
Three-dimensional microorganization of the soil-root-microbe system. Microb Ecol (2006) 2.33
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res (2011) 2.26
Plant host habitat and root exudates shape soil bacterial community structure. ISME J (2008) 2.15
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol (2009) 2.02
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A (2011) 1.98
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc Natl Acad Sci U S A (2013) 1.94
Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance. Environ Microbiol (2007) 1.91
Autotrophic ammonia oxidation by soil thaumarchaea. Proc Natl Acad Sci U S A (2010) 1.89
Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing. Microbiology (2002) 1.85
Hypoxia-inducible factors HIF-1alpha and HIF-2alpha in head and neck cancer: relationship to tumor biology and treatment outcome in surgically resected patients. Cancer Res (2002) 1.84
Introducing the bacterial 'chromid': not a chromosome, not a plasmid. Trends Microbiol (2010) 1.80
An atlas of gene expression from seed to seed through barley development. Funct Integr Genomics (2006) 1.79
Unravelling rhizosphere-microbial interactions: opportunities and limitations. Trends Microbiol (2004) 1.77
The mitochondrial genome sequence of the arbuscular mycorrhizal fungus Glomus intraradices isolate 494 and implications for the phylogenetic placement of Glomus. New Phytol (2009) 1.76
Niche specialization of terrestrial archaeal ammonia oxidizers. Proc Natl Acad Sci U S A (2011) 1.72
Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient. Environ Microbiol (2006) 1.72
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J (2011) 1.71
Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Mol Plant Microbe Interact (2011) 1.66
Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol (2010) 1.61
Bacterial biodiversity-ecosystem functioning relations are modified by environmental complexity. PLoS One (2010) 1.59
Maintenance of soil functioning following erosion of microbial diversity. Environ Microbiol (2006) 1.58
Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ Microbiol (2005) 1.55
Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations. Appl Environ Microbiol (2002) 1.54
Highly parallel gene-to-BAC addressing using microarrays. Biotechniques (2011) 1.52
Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl Environ Microbiol (2002) 1.49
Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds. J Exp Bot (2007) 1.47
Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol (2003) 1.46
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biol (2009) 1.45
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. Plant J (2007) 1.45
Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America. Appl Environ Microbiol (2005) 1.44
Diversity of fungi in organic soils under a moorland--Scots pine (Pinus sylvestris L.) gradient. Environ Microbiol (2003) 1.42
Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytol (2014) 1.41
Temporal variation in the arbuscular mycorrhizal communities colonising seedlings in a tropical forest. FEMS Microbiol Ecol (2002) 1.35
Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiol Ecol (2011) 1.34
Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils. Environ Microbiol (2005) 1.32
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Appl Environ Microbiol (2010) 1.32
Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends Microbiol (2010) 1.31
Nonlegumes, legumes, and root nodules harbor different arbuscular mycorrhizal fungal communities. Appl Environ Microbiol (2004) 1.30
Burkholderia species are ancient symbionts of legumes. Mol Ecol (2009) 1.29
Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Appl Environ Microbiol (2005) 1.29
Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA. Proc Natl Acad Sci U S A (2007) 1.28
Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl Environ Microbiol (2003) 1.27
Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils. Appl Environ Microbiol (2011) 1.26
Correlation of methane production and functional gene transcriptional activity in a peat soil. Appl Environ Microbiol (2009) 1.21
Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils. Environ Microbiol (2006) 1.20
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2009) 1.19
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria. Appl Environ Microbiol (2007) 1.18
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Plant Cell (2012) 1.17
Spatial analysis of archaeal community structure in grassland soil. Appl Environ Microbiol (2003) 1.17
Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines. Plant Physiol (2005) 1.17
Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest. FEMS Microbiol Ecol (2009) 1.17
Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME J (2011) 1.17
Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol (2006) 1.16
Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation. Environ Microbiol (2006) 1.16
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environ Microbiol (2009) 1.11
Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils. Appl Environ Microbiol (2005) 1.10
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytol (2010) 1.09
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol (2009) 1.09
Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environ Microbiol (2008) 1.08
Establishment of normal gut microbiota is compromised under excessive hygiene conditions. PLoS One (2011) 1.07
Through the eye of the needle: a review of isotope approaches to quantify microbial processes mediating soil carbon balance. New Phytol (2009) 1.06
A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria. PLoS One (2008) 1.06
Real-time PCR and microscopy: are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance? Fungal Genet Biol (2007) 1.06
Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure. ISME J (2007) 1.06
Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil. Environ Microbiol (2004) 1.03
The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil. Environ Microbiol (2003) 1.02
The ribulose-1,5-bisphosphate carboxylase/oxygenase gene cluster of Methylococcus capsulatus (Bath). Arch Microbiol (2002) 1.01
Differential effects of microorganism-invertebrate interactions on benthic nitrogen cycling. FEMS Microbiol Ecol (2012) 1.01
Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing. FEMS Microbiol Ecol (2007) 1.00
Phylogeny of the Glomerales and Diversisporales (fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences. FEMS Microbiol Lett (2003) 0.99
Comparison of PCR primer-based strategies for characterization of ammonia oxidizer communities in environmental samples. FEMS Microbiol Ecol (2006) 0.99
Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity. Appl Environ Microbiol (2006) 0.98
Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen. FEMS Microbiol Ecol (2012) 0.97
Spatial distribution of leaf nitrogen and photosynthetic capacity within the foliage of individual trees: disentangling the effects of local light quality, leaf irradiance, and transpiration. J Exp Bot (2002) 0.97
Slipins: ancient origin, duplication and diversification of the stomatin protein family. BMC Evol Biol (2008) 0.96
Establishment, persistence and effectiveness of arbuscular mycorrhizal fungal inoculants in the field revealed using molecular genetic tracing and measurement of yield components. New Phytol (2012) 0.96
Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ Microbiol (2005) 0.96
Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberum. Ann Bot (2007) 0.96
PCR-denaturing gradient gel electrophoresis of complex microbial communities: a two-step approach to address the effect of gel-to-gel variation and allow valid comparisons across a large dataset. Microb Ecol (2009) 0.96
A typing scheme for the honeybee pathogen Melissococcus plutonius allows detection of disease transmission events and a study of the distribution of variants. Environ Microbiol Rep (2013) 0.95
Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile. FEMS Microbiol Ecol (2010) 0.95
Diversity of Sinorhizobium meliloti from the Central Asian Alfalfa Gene Center. Appl Environ Microbiol (2002) 0.95
Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bog. FEMS Microbiol Ecol (2010) 0.95
Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations. Appl Environ Microbiol (2010) 0.94
A novel method for the study of the biophysical interface in soils using nano-scale secondary ion mass spectrometry. Rapid Commun Mass Spectrom (2007) 0.93
Community profiling and quantification of putative autotrophic thaumarchaeal communities in environmental samples. Environ Microbiol Rep (2010) 0.93
PCR profiling of ammonia-oxidizer communities in acidic soils subjected to nitrogen and sulphur deposition. FEMS Microbiol Ecol (2007) 0.93
Population mixing of Rhizobium leguminosarum bv. viciae nodulating Vicia faba: the role of recombination and lateral gene transfer. FEMS Microbiol Ecol (2010) 0.93
Role of functionally dominant species in varying environmental regimes: evidence for the performance-enhancing effect of biodiversity. BMC Ecol (2012) 0.93
Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumes. Mol Ecol (2004) 0.93
The impact of zero-valent iron nanoparticles on a river water bacterial community. J Hazard Mater (2010) 0.92
Alteration and resilience of the soil microbial community following compost amendment: effects of compost level and compost-borne microbial community. Environ Microbiol (2006) 0.92