Published in Genome Res on March 18, 2008
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet (2009) 6.36
Inference of locus-specific ancestry in closely related populations. Bioinformatics (2009) 2.54
Phasing of many thousands of genotyped samples. Am J Hum Genet (2012) 2.47
Fast and accurate inference of local ancestry in Latino populations. Bioinformatics (2012) 2.30
New approaches to disease mapping in admixed populations. Nat Rev Genet (2011) 2.22
A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery. Am J Hum Genet (2008) 1.92
RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am J Hum Genet (2013) 1.82
Adjustment for local ancestry in genetic association analysis of admixed populations. Bioinformatics (2010) 1.44
Efficient genome ancestry inference in complex pedigrees with inbreeding. Bioinformatics (2010) 1.40
Joint testing of genotype and ancestry association in admixed families. Genet Epidemiol (2010) 1.25
Ancestry informative marker panels for African Americans based on subsets of commercially available SNP arrays. Genet Epidemiol (2011) 1.12
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (2013) 1.11
Genome-wide detection of natural selection in African Americans pre- and post-admixture. Genome Res (2011) 1.09
The lengths of admixture tracts. Genetics (2014) 1.06
Genomics research: world survey of public funding. BMC Genomics (2008) 1.06
Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations. BMC Genet (2012) 1.01
Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans. PLoS One (2011) 0.99
Detecting structure of haplotypes and local ancestry. Genetics (2014) 0.92
Accurate inference of local phased ancestry of modern admixed populations. Sci Rep (2014) 0.92
Enhanced methods for local ancestry assignment in sequenced admixed individuals. PLoS Comput Biol (2014) 0.91
Accurate local-ancestry inference in exome-sequenced admixed individuals via off-target sequence reads. Am J Hum Genet (2013) 0.86
Ancestry inference in complex admixtures via variable-length Markov chain linkage models. J Comput Biol (2013) 0.84
Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach. Genetics (2012) 0.83
Blockwise HMM computation for large-scale population genomic inference. Bioinformatics (2012) 0.83
European admixture on the Micronesian island of Kosrae: lessons from complete genetic information. Eur J Hum Genet (2009) 0.83
The role of local ancestry adjustment in association studies using admixed populations. Genet Epidemiol (2014) 0.80
Genetic structure characterization of Chileans reflects historical immigration patterns. Nat Commun (2015) 0.79
De novo inference of stratification and local admixture in sequencing studies. BMC Bioinformatics (2013) 0.77
Detecting hybridization using ancient DNA. Mol Ecol (2016) 0.77
Extending admixture mapping to nuclear pedigrees: application to sarcoidosis. Genet Epidemiol (2013) 0.77
Inferring ancestry from population genomic data and its applications. Front Genet (2014) 0.76
Na Li and Matthew Stephens on Modeling Linkage Disequilibrium. Genetics (2016) 0.75
The analysis of ethnic mixtures. Methods Mol Biol (2012) 0.75
ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium. BMC Genet (2015) 0.75
A haplotype map of the human genome. Nature (2005) 105.70
A new statistical method for haplotype reconstruction from population data. Am J Hum Genet (2001) 59.30
Global variation in copy number in the human genome. Nature (2006) 57.50
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics (2003) 53.11
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet (2003) 21.52
The fine-scale structure of recombination rate variation in the human genome. Science (2004) 17.05
Methods for high-density admixture mapping of disease genes. Am J Hum Genet (2004) 12.02
Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture. Am J Hum Genet (1998) 7.96
Comparison of fine-scale recombination rates in humans and chimpanzees. Science (2005) 7.86
Design and analysis of admixture mapping studies. Am J Hum Genet (2004) 7.20
Recent human effective population size estimated from linkage disequilibrium. Genome Res (2007) 6.79
Admixture mapping for hypertension loci with genome-scan markers. Nat Genet (2005) 6.78
Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinformatics (2004) 6.02
Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet (2006) 5.92
Statistical tests for admixture mapping with case-control and cases-only data. Am J Hum Genet (2004) 4.52
Linkage analysis of a complex disease through use of admixed populations. Am J Hum Genet (2004) 2.21
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res (2003) 23.03
Distribution and intensity of constraint in mammalian genomic sequence. Genome Res (2005) 18.85
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res (2005) 11.90
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods (2008) 11.61
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res (2012) 9.13
Whole-genome sequencing and assembly with high-throughput, short-read technologies. PLoS One (2007) 8.70
Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLoS Comput Biol (2010) 8.69
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature (2005) 7.74
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res (2007) 7.05
Linking disease associations with regulatory information in the human genome. Genome Res (2012) 5.47
Glocal alignment: finding rearrangements during alignment. Bioinformatics (2003) 4.88
Characterization of evolutionary rates and constraints in three Mammalian genomes. Genome Res (2004) 4.45
CONTRAfold: RNA secondary structure prediction without physics-based models. Bioinformatics (2006) 4.31
Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database. PLoS Genet (2012) 4.27
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements. Genome Res (2012) 3.61
Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes. Genome Res (2003) 3.52
Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics (2003) 2.94
Multiple sequence alignment. Curr Opin Struct Biol (2006) 2.93
Graemlin: general and robust alignment of multiple large interaction networks. Genome Res (2006) 2.92
Eukaryotic regulatory element conservation analysis and identification using comparative genomics. Genome Res (2004) 2.84
Extensive variation in chromatin states across humans. Science (2013) 2.83
Automated whole-genome multiple alignment of rat, mouse, and human. Genome Res (2004) 2.64
Bacterial flora-typing with targeted, chip-based Pyrosequencing. BMC Microbiol (2007) 2.51
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes. Genome Res (2010) 2.31
Application of independent component analysis to microarrays. Genome Biol (2003) 2.16
Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell (2009) 2.16
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol (2007) 2.01
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics (2004) 1.97
Autoimmune disease classification by inverse association with SNP alleles. PLoS Genet (2009) 1.96
A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci. Nat Genet (2013) 1.85
Genome-wide analysis points to roles for extracellular matrix remodeling, the visual cycle, and neuronal development in myopia. PLoS Genet (2013) 1.68
Efficient replication of over 180 genetic associations with self-reported medical data. PLoS One (2011) 1.65
What is the expectation maximization algorithm? Nat Biotechnol (2008) 1.64
Novel associations for hypothyroidism include known autoimmune risk loci. PLoS One (2012) 1.50
Genome evolution during progression to breast cancer. Genome Res (2013) 1.37
Automatic parameter learning for multiple local network alignment. J Comput Biol (2009) 1.33
Short read alignment with populations of genomes. Bioinformatics (2013) 1.30
A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res (2004) 1.29
A serial founder effect model for human settlement out of Africa. Proc Biol Sci (2009) 1.29
Genetic variants associated with breast size also influence breast cancer risk. BMC Med Genet (2012) 1.26
Current progress in network research: toward reference networks for key model organisms. Brief Bioinform (2007) 1.24
A max-margin model for efficient simultaneous alignment and folding of RNA sequences. Bioinformatics (2008) 1.23
Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Res (2006) 1.21
Serum iron levels and the risk of Parkinson disease: a Mendelian randomization study. PLoS Med (2013) 1.18
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay. Genome Res (2003) 1.10
AGenDA: homology-based gene prediction. Bioinformatics (2003) 1.08
MotifCut: regulatory motifs finding with maximum density subgraphs. Bioinformatics (2006) 1.04
Reconstruction of genealogical relationships with applications to Phase III of HapMap. Bioinformatics (2011) 0.98
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. Nucleic Acids Res (2006) 0.97
Genetic and computational identification of a conserved bacterial metabolic module. PLoS Genet (2008) 0.95
Inference of tumor phylogenies with improved somatic mutation discovery. J Comput Biol (2013) 0.89
A Classifier-based approach to identify genetic similarities between diseases. Bioinformatics (2009) 0.88
Ancestry inference in complex admixtures via variable-length Markov chain linkage models. J Comput Biol (2013) 0.84
The implications of ENCODE for diagnostics. Nat Biotechnol (2012) 0.81
The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. Nucleic Acids Res (2011) 0.79
Using multiple alignments to improve seeded local alignment algorithms. Nucleic Acids Res (2005) 0.78
Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans. Bioinformatics (2013) 0.76
TreeRefiner: a tool for refining a multiple alignment on a phylogenetic tree. Proc IEEE Comput Syst Bioinform Conf (2005) 0.76
RECOMB Main Conference 2009. J Comput Biol (2010) 0.75
Evidence for intelligent (algorithm) design. Genome Biol (2006) 0.75