Published in J Synchrotron Radiat on April 18, 2008
Joint X-ray and neutron refinement with phenix.refine. Acta Crystallogr D Biol Crystallogr (2010) 1.80
Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr (1998) 169.28
XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. J Struct Biol (1999) 17.84
Recent results on hydrogen and hydration in biology studied by neutron macromolecular crystallography. Cell Mol Life Sci (2006) 1.37
Protein crystallography with spallation neutrons. J Synchrotron Radiat (2003) 1.09
Neutrons expand the field of structural biology. Curr Opin Struct Biol (1999) 0.95
Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif. Structure (2003) 0.92
Hydration structures in proteins and neutron diffraction experiment on dissimilatory sul te reductase D (DsrD). J Synchrotron Radiat (2003) 0.85
Overexpression, purification and immunodetection of DsrD from Desulfovibrio vulgaris Hildenborough. Antonie Van Leeuwenhoek (2000) 0.84
Neutron Laue diffraction does it faster. Nat Struct Biol (1997) 0.82
The structure of the mammalian 20S proteasome at 2.75 A resolution. Structure (2002) 3.44
The DIX domain of Dishevelled confers Wnt signaling by dynamic polymerization. Nat Struct Mol Biol (2007) 3.13
Neutron crystallography: opportunities, challenges, and limitations. Curr Opin Struct Biol (2008) 2.36
A dinuclear Ni(mu-H)Ru complex derived from H2. Science (2007) 1.76
Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase. Nature (2011) 1.70
Protein encapsulation within synthetic molecular hosts. Nat Commun (2012) 1.63
A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4). J Synchrotron Radiat (2003) 1.45
Neutron structure analysis using the IBARAKI biological crystal diffractometer (iBIX) at J-PARC. Acta Crystallogr D Biol Crystallogr (2010) 1.41
Structure of the cadherin-related neuronal receptor/protocadherin-alpha first extracellular cadherin domain reveals diversity across cadherin families. J Biol Chem (2006) 1.38
Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: conversion of the ready to the unready state. Structure (2005) 1.36
[NiFe] hydrogenases: structural and spectroscopic studies of the reaction mechanism. Dalton Trans (2009) 1.30
Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. J Mol Biol (2005) 1.25
Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules. Proc Natl Acad Sci U S A (2004) 1.25
Low-barrier hydrogen bond in photoactive yellow protein. Proc Natl Acad Sci U S A (2009) 1.25
Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements. Nucleic Acids Res (2005) 1.21
Extended lymphadenectomy and preoperative radiotherapy for lower rectal cancers. Surgery (2002) 1.20
The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique. Acta Crystallogr D Biol Crystallogr (2005) 1.15
Structural studies of the carbon monoxide complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: suggestion for the initial activation site for dihydrogen. J Am Chem Soc (2002) 1.12
Hydrogen atoms in proteins: positions and dynamics. Proc Natl Acad Sci U S A (2003) 1.12
Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J Biol Chem (2010) 1.09
A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution. Acta Crystallogr D Biol Crystallogr (2009) 1.06
Gastrointestinal stromal tumor presenting with prominent calcification. World J Gastroenterol (2012) 1.05
Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution. Biophys Chem (2002) 1.03
Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase. J Mol Biol (2007) 1.03
Structure determination of the constitutive 20S proteasome from bovine liver at 2.75 A resolution. J Biochem (2002) 1.03
Hydration in proteins observed by high-resolution neutron crystallography. Proteins (2003) 1.02
X-ray crystallographic analysis of 6-aminohexanoate-dimer hydrolase: molecular basis for the birth of a nylon oligomer-degrading enzyme. J Biol Chem (2005) 1.01
Cytochrome c polymerization by successive domain swapping at the C-terminal helix. Proc Natl Acad Sci U S A (2010) 1.01
Single crystal EPR studies of the reduced active site of [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F. J Am Chem Soc (2003) 1.00
The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol. Eur J Biochem (2002) 0.99
X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation. J Biol Chem (2009) 0.98
Mechanisms of plasmin-catalyzed inactivation of factor VIII: a crucial role for proteolytic cleavage at Arg336 responsible for plasmin-catalyzed factor VIII inactivation. J Biol Chem (2006) 0.97
More rapid evaluation of biomacromolecular crystals for diffraction experiments. Acta Crystallogr D Biol Crystallogr (2004) 0.97
Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J Mol Biol (2007) 0.97
Crystal structure of the de-ubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain. Biochem Biophys Res Commun (2009) 0.96
22q13 Microduplication in two patients with common clinical manifestations: a recognizable syndrome? Am J Med Genet A (2007) 0.96
Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography. J Am Chem Soc (2007) 0.96
Evaluation of performance for IBARAKI biological crystal diffractometer iBIX with new detectors. J Synchrotron Radiat (2013) 0.96
Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin. J Struct Biol (2012) 0.95
The PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module. EMBO J (2009) 0.95
A single-crystal ENDOR and density functional theory study of the oxidized states of the [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F. J Biol Inorg Chem (2005) 0.93
Human DNA replication-related element binding factor (hDREF) self-association via hATC domain is necessary for its nuclear accumulation and DNA binding. J Biol Chem (2007) 0.93
Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold. FEBS J (2009) 0.93
Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris. Acta Crystallogr D Biol Crystallogr (2003) 0.93
Crystallization and evaluation of hen egg-white lysozyme crystals for protein pH titration in the crystalline state. J Synchrotron Radiat (2008) 0.93
Genetic Polymorphism of Cancer Susceptibility Genes and HPV Infection in Cervical Carcinogenesis. Patholog Res Int (2011) 0.92
Mutational analysis of 6-aminohexanoate-dimer hydrolase: relationship between nylon oligomer hydrolytic and esterolytic activities. FEBS Lett (2006) 0.92
Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif. Structure (2003) 0.92
Crystal structures of hydrogenase maturation protein HypE in the Apo and ATP-bound forms. J Mol Biol (2007) 0.92
Positively charged residues located downstream of PIP box, together with TD amino acids within PIP box, are important for CRL4(Cdt2) -mediated proteolysis. Genes Cells (2010) 0.91
Direct determination of protonation states of histidine residues in a 2 A neutron structure of deoxy-human normal adult hemoglobin and implications for the Bohr effect. J Mol Biol (2010) 0.90
A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution. Acta Crystallogr D Biol Crystallogr (2004) 0.90
X-ray structure of a two-domain type laccase: a missing link in the evolution of multi-copper proteins. FEBS Lett (2009) 0.90
Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase. Biochemistry (2002) 0.90
Treatable fluctuating mental impairment in a patient with Bardet-Biedl syndrome. Clin Neurol Neurosurg (2008) 0.89
X-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex. Acta Crystallogr D Biol Crystallogr (2011) 0.89
Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases. J Biol Chem (2012) 0.88
Crystallization of a large single crystal of a B-DNA decamer for a neutron diffraction experiment by the phase-diagram technique. Acta Crystallogr D Biol Crystallogr (2001) 0.88
Characterization of bacterial-type phosphoenolpyruvate carboxylase expressed in male gametophyte of higher plants. BMC Plant Biol (2010) 0.88
Endohedral clusterization of ten water molecules into a "molecular ice"within the hydrophobic pocket of a self-assembled cage. J Am Chem Soc (2005) 0.88
Crystal structure of CO-sensing transcription activator CooA bound to exogenous ligand imidazole. J Mol Biol (2007) 0.88
Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase. Protein Sci (2009) 0.87
Domain swapping of the heme and N-terminal α-helix in Hydrogenobacter thermophilus cytochrome c(552) dimer. Biochemistry (2012) 0.87
Structural and oxygen binding properties of dimeric horse myoglobin. Dalton Trans (2012) 0.86
The utility of activated partial thromboplastin time (aPTT) clot waveform analysis in the investigation of hemophilia A patients with very low levels of factor VIII activity (FVIII:C). Thromb Haemost (2002) 0.86
Structural study reveals that Ser-354 determines substrate specificity on human histidine decarboxylase. J Biol Chem (2012) 0.86
Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis. J Biol Chem (2011) 0.86
To flip or not to flip? Assessing the inversion barrier of the tetraphenylene framework with enantiopure 2,15-dideuteriotetraphenylene and 2,7-dimethyltetraphenylene. J Org Chem (2009) 0.85
Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor. Structure (2005) 0.85
Hydration structures in proteins and neutron diffraction experiment on dissimilatory sul te reductase D (DsrD). J Synchrotron Radiat (2003) 0.85
Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity. Protein Sci (2010) 0.85
Crystallization and X-ray diffraction analysis of nylon-oligomer hydrolase (NylC) from Agromyces sp. KY5R. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.84
Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F. Biophys J (2003) 0.83
SPring-8 BL41XU, a high-flux macromolecular crystallography beamline. J Synchrotron Radiat (2013) 0.82
Structural and enzymatic characterization of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis. Protein Sci (2012) 0.82
Purification, crystallization and preliminary X-ray diffraction experiment of nattokinase from Bacillus subtilis natto. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.82
Crystallization and preliminary X-ray studies of ferredoxin-NADP+ oxidoreductase encoded by Bacillus subtilis yumC. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.82
Control of the transition between Ni-C and Ni-SI(a) states by the redox state of the proximal Fe-S cluster in the catalytic cycle of [NiFe] hydrogenase. Angew Chem Int Ed Engl (2014) 0.82