Published in Biosystems on September 11, 2008
Kirkwood-Buff theory of molecular and protein association, aggregation, and cellular crowding. J Chem Phys (2009) 0.97
Reaching new levels of realism in modeling biological macromolecules in cellular environments. J Mol Graph Model (2013) 0.88
Effects of hydrophobic macromolecular crowders on amyloid β (16-22) aggregation. Biophys J (2015) 0.77
Combined effect of confinement and affinity of crowded environment on conformation switching of adenylate kinase. J Mol Model (2014) 0.76
Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns. Proc Natl Acad Sci U S A (2006) 2.21
First-principles design of nanomachines. Proc Natl Acad Sci U S A (2009) 1.41
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif. Proc Natl Acad Sci U S A (2009) 1.21
Stabilizing effect of knots on proteins. Proc Natl Acad Sci U S A (2008) 1.18
Tightening of knots in proteins. Phys Rev Lett (2008) 1.13
Selection of optimal variants of Gō-like models of proteins through studies of stretching. Biophys J (2008) 1.10
Mechanical strength of 17,134 model proteins and cysteine slipknots. PLoS Comput Biol (2009) 1.01
Hydrodynamic effects in proteins. J Phys Condens Matter (2010) 0.99
Understanding biology by stretching proteins: recent progress. Curr Opin Struct Biol (2010) 0.96
The folding of knotted proteins: insights from lattice simulations. Phys Biol (2010) 0.95
Untying knots in proteins. J Am Chem Soc (2010) 0.92
Proteins in a shear flow. J Chem Phys (2007) 0.92
What can one learn from experiments about the elusive transition state? Protein Sci (2004) 0.90
Stretching of proteins in a uniform flow. J Chem Phys (2006) 0.88
Assembly of protein tertiary structures from secondary structures using optimized potentials. Proteins (2003) 0.88
BSDB: the biomolecule stretching database. Nucleic Acids Res (2010) 0.87
Retracted Stretching to understand proteins - a survey of the protein data bank. Biophys J (2007) 0.86
Predicting the order in which contacts are broken during single molecule protein stretching experiments. Proteins (2008) 0.83
Mechanical stability of multidomain proteins and novel mechanical clamps. Proteins (2011) 0.82
Native state dynamics and mechanical properties of human topoisomerase I within a structure-based coarse-grained model. Proteins (2009) 0.82
Stretching and twisting of the DNA duplexes in coarse-grained dynamical models. J Phys Condens Matter (2009) 0.80
Lattice tube model of proteins. Phys Rev Lett (2004) 0.79
Molecular jamming--the cystine slipknot mechanical clamp in all-atom simulations. J Chem Phys (2011) 0.78
Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.78
Structure-based analysis of thermodynamic and mechanical properties of cavity-containing proteins--case study of plant pathogenesis-related proteins of class 10. FEBS J (2013) 0.78
Cystine plug and other novel mechanisms of large mechanical stability in dimeric proteins. Phys Rev Lett (2012) 0.77
Denaturation of proteins near polar surfaces. J Chem Phys (2011) 0.76
The influence of hydrodynamic interactions on protein dynamics in confined and crowded spaces-assessment in simple models. Phys Biol (2010) 0.76
Theoretical tests of the mechanical protection strategy in protein nanomechanics. Proteins (2014) 0.76
Linker-mediated assembly of gold nanoparticles into multimeric motifs. Nanotechnology (2011) 0.76
Cotranslational folding of deeply knotted proteins. J Phys Condens Matter (2015) 0.76
Formation of cystine slipknots in dimeric proteins. PLoS One (2013) 0.75
Unbinding and unfolding of adhesion protein complexes through stretching: interplay between shear and tensile mechanical clamps. Proteins (2014) 0.75
Amino acids and proteins at ZnO-water interfaces in molecular dynamics simulations. Phys Chem Chem Phys (2013) 0.75
The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes. Phys Chem Chem Phys (2017) 0.75
Prediction of protein secondary structures from conformational biases. Proteins (2002) 0.75
Structural fluctuations and thermal stability of proteins in crowded environments: effects of the excluded volume. Phys Biol (2016) 0.75
Proteins at air-water and oil-water interfaces in an all-atom model. Phys Chem Chem Phys (2017) 0.75
Molecular dynamics simulations of crystallization of hard spheres. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
A multi-scale molecular dynamics study of the assembly of micron-size supraparticles from 30 nm alkyl-coated nanoparticles. Phys Chem Chem Phys (2013) 0.75
Geometrical and electrical properties of indium tin oxide clusters in ink dispersions. Langmuir (2011) 0.75
Statistical radii associated with amino acids to determine the contact map: fixing the structure of a type I cohesin domain in the Clostridium thermocellum cellulosome. Phys Biol (2015) 0.75
Self-assembly of model proteins into virus capsids. J Phys Condens Matter (2017) 0.75
Proteins in the electric field near the surface of mica. J Chem Phys (2013) 0.75