Published in Mol Syst Biol on April 28, 2009
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Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. BMC Bioinformatics (2005) 1.31
Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions. Nucleic Acids Res (2005) 1.27
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Making connections between novel transcription factors and their DNA motifs. Genome Res (2005) 1.16
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Using defined finger-finger interfaces as units of assembly for constructing zinc-finger nucleases. Nucleic Acids Res (2013) 0.91
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Modeling the quantitative specificity of DNA-binding proteins from example binding sites. PLoS One (2009) 0.91
Transcriptional profiles of human epithelial cells in response to heat: computational evidence for novel heat shock proteins. Shock (2008) 0.90
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Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines. PLoS Comput Biol (2009) 0.88
Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2. BMC Genomics (2009) 0.88
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Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Res (2007) 0.87
Putting the Leishmania genome to work: functional genomics by transposon trapping and expression profiling. Philos Trans R Soc Lond B Biol Sci (2002) 0.87
Exploring the DNA-recognition potential of homeodomains. Genome Res (2012) 0.83
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Discriminative motif optimization based on perceptron training. Bioinformatics (2013) 0.81
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Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation. Proc IEEE Int Symp Bioinformatics Bioeng (2010) 0.79
Fast, sensitive discovery of conserved genome-wide motifs. J Comput Biol (2012) 0.78
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Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans. Bioinformatics (2006) 0.75