Published in Open Microbiol J on March 24, 2009
Toward defining the autoimmune microbiome for type 1 diabetes. ISME J (2010) 3.03
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Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One (2011) 2.18
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Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS One (2013) 1.18
The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations. PLoS One (2015) 1.17
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Sample storage conditions significantly influence faecal microbiome profiles. Sci Rep (2015) 1.05
Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulation. Appl Environ Microbiol (2011) 1.04
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Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes. Diabetes Care (2014) 0.94
Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes. Front Microbiol (2014) 0.91
Tracking pathogen transmission at the human-wildlife interface: banded mongoose and Escherichia coli. Ecohealth (2013) 0.90
Rectal swabs for analysis of the intestinal microbiota. PLoS One (2014) 0.88
A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity. PLoS One (2015) 0.86
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Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience. Ann Epidemiol (2016) 0.78
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Preservation of microbial communities enriched on lignocellulose under thermophilic and high-solid conditions. Biotechnol Biofuels (2015) 0.77
Effect of short-term room temperature storage on the microbial community in infant fecal samples. Sci Rep (2016) 0.77
A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome. Sci Rep (2016) 0.75
Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh. Appl Environ Microbiol (2017) 0.75
Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations. PLoS One (2017) 0.75
16S Based Microbiome Analysis from Healthy Subjects' Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes. Front Microbiol (2016) 0.75
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online (2007) 54.21
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
Microbial ecology: human gut microbes associated with obesity. Nature (2006) 36.98
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics (2006) 25.13
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res (2006) 23.67
Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One (2008) 14.63
Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J (2007) 13.95
A microbial symbiosis factor prevents intestinal inflammatory disease. Nature (2008) 13.15
Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature (2008) 12.45
PCAP: a whole-genome assembly program. Genome Res (2003) 12.36
Microbial influences in inflammatory bowel diseases. Gastroenterology (2008) 9.20
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol (2006) 6.45
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Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes? Diabetologia (2006) 3.21
Molecular analysis of the gut microbiota of identical twins with Crohn's disease. ISME J (2008) 2.96
Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study. Gut (2006) 2.85
Oral probiotic administration induces interleukin-10 production and prevents spontaneous autoimmune diabetes in the non-obese diabetic mouse. Diabetologia (2005) 2.21
Antidiabetic effect of probiotic dahi containing Lactobacillus acidophilus and Lactobacillus casei in high fructose fed rats. Nutrition (2006) 1.92
In vitro alterations of intestinal bacterial microbiota in fecal samples during storage. Diagn Microbiol Infect Dis (2004) 1.51
Prevention of onset in an insulin-dependent diabetes mellitus model, NOD mice, by oral feeding of Lactobacillus casei. APMIS (1997) 1.33
Using the quantitative genetic threshold model for inferences between and within species. Philos Trans R Soc Lond B Biol Sci (2005) 1.31
Gut microflora associated characteristics in children with celiac disease. Am J Gastroenterol (2005) 1.26
A molecular revolution in the study of intestinal microflora. Gut (2006) 1.18
Hygiene, microbial diversity and immune regulation. Curr Opin Gastroenterol (2007) 0.85
Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J (2007) 13.95
MyD88-dependent expansion of an immature GR-1(+)CD11b(+) population induces T cell suppression and Th2 polarization in sepsis. J Exp Med (2007) 5.48
Co-stimulation modulation with abatacept in patients with recent-onset type 1 diabetes: a randomised, double-blind, placebo-controlled trial. Lancet (2011) 4.30
Seroconversion to multiple islet autoantibodies and risk of progression to diabetes in children. JAMA (2013) 3.65
Antigen-based therapy with glutamic acid decarboxylase (GAD) vaccine in patients with recent-onset type 1 diabetes: a randomised double-blind trial. Lancet (2011) 3.13
Soy isoflavones in the prevention of menopausal bone loss and menopausal symptoms: a randomized, double-blind trial. Arch Intern Med (2011) 3.11
Diabetic endothelial nitric oxide synthase knockout mice develop advanced diabetic nephropathy. J Am Soc Nephrol (2007) 3.08
A comprehensive review of interventions in the NOD mouse and implications for translation. Immunity (2005) 3.07
Toward defining the autoimmune microbiome for type 1 diabetes. ISME J (2010) 3.03
Intestinal microbial ecology in premature infants assessed with non-culture-based techniques. J Pediatr (2010) 2.93
Functional mapping of quantitative trait loci underlying the character process: a theoretical framework. Genetics (2002) 2.92
Pancreatic islet autoantibodies as predictors of type 1 diabetes in the Diabetes Prevention Trial-Type 1. Diabetes Care (2009) 2.91
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Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice. PLoS Genet (2008) 2.90
Demonstration of islet-autoreactive CD8 T cells in insulitic lesions from recent onset and long-term type 1 diabetes patients. J Exp Med (2012) 2.86
Fecal microbiota in premature infants prior to necrotizing enterocolitis. PLoS One (2011) 2.81
Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes. J Exp Med (2008) 2.79
The "perfect storm" for type 1 diabetes: the complex interplay between intestinal microbiota, gut permeability, and mucosal immunity. Diabetes (2008) 2.77
Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol (2005) 2.68
Data standards in clinical research: gaps, overlaps, challenges and future directions. J Am Med Inform Assoc (2007) 2.64
Functional defects and the influence of age on the frequency of CD4+ CD25+ T-cells in type 1 diabetes. Diabetes (2005) 2.63
Expansion of human regulatory T-cells from patients with type 1 diabetes. Diabetes (2008) 2.52
Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl Environ Microbiol (2003) 2.45
Interleukin-1 antagonism in type 1 diabetes of recent onset: two multicentre, randomised, double-blind, placebo-controlled trials. Lancet (2013) 2.45
The Environmental Determinants of Diabetes in the Young (TEDDY): genetic criteria and international diabetes risk screening of 421 000 infants. Pediatr Diabetes (2011) 2.44
Microbial communities and their interactions in soil and rhizosphere ecosystems. Annu Rev Microbiol (2002) 2.41
Diabetes care in the school and day care setting. Diabetes Care (2012) 2.41
A new Hu-PBL model for the study of human islet alloreactivity based on NOD-scid mice bearing a targeted mutation in the IL-2 receptor gamma chain gene. Clin Immunol (2007) 2.23
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One (2011) 2.18
Heme oxygenase-1 modulates early inflammatory responses: evidence from the heme oxygenase-1-deficient mouse. Am J Pathol (2004) 2.09
Evaluation of multiple radiographic predictors of cartilage lesions in the hip joints of eight-month-old dogs. Am J Vet Res (2003) 2.09
Establishing a consortium for the study of rare diseases: The Urea Cycle Disorders Consortium. Mol Genet Metab (2010) 2.07
PANGEA: pipeline for analysis of next generation amplicons. ISME J (2010) 2.05
A model for the role of gut bacteria in the development of autoimmunity for type 1 diabetes. Diabetologia (2015) 2.02
In vivo and in vitro characterization of insulin-producing cells obtained from murine bone marrow. Diabetes (2004) 2.01
Formation of a human β-cell population within pancreatic islets is set early in life. J Clin Endocrinol Metab (2012) 2.01
Distantly sampled soils carry few species in common. ISME J (2008) 2.00
B cells enhance early innate immune responses during bacterial sepsis. J Exp Med (2011) 1.99
No alterations in the frequency of FOXP3+ regulatory T-cells in type 1 diabetes. Diabetes (2007) 1.99
Hyperglycemia and lower diet quality in pregnant overweight women and increased infant size at birth and at 13 months of age--STEPS study. Early Hum Dev (2013) 1.97
New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism. Nat Genet (2012) 1.90
Tobacco smoke exposure is associated with attenuated endothelial function in 11-year-old healthy children. Circulation (2007) 1.89
FTO genotype is associated with body mass index after the age of seven years but not with energy intake or leisure-time physical activity. J Clin Endocrinol Metab (2009) 1.87
Increased natural CD4+CD25+ regulatory T cells and their suppressor activity do not contribute to mortality in murine polymicrobial sepsis. J Immunol (2006) 1.86
Natural history of transglutaminase autoantibodies and mucosal changes in children carrying HLA-conferred celiac disease susceptibility. Scand J Gastroenterol (2005) 1.85
Reversal of autoimmune diabetes by restoration of antigen-specific tolerance using genetically modified Lactococcus lactis in mice. J Clin Invest (2012) 1.84
Synchrony in aquatic microbial community dynamics. ISME J (2007) 1.83
Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model. ISME J (2009) 1.74
A general framework for analyzing the genetic architecture of developmental characteristics. Genetics (2004) 1.74
Elevated serum C-reactive protein levels and early arterial changes in healthy children. Arterioscler Thromb Vasc Biol (2002) 1.71
Why can't we prevent type 1 diabetes?: maybe it's time to try a different combination. Diabetes Care (2003) 1.71
Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats. PLoS One (2010) 1.70
Network for Pancreatic Organ Donors with Diabetes (nPOD): developing a tissue biobank for type 1 diabetes. Diabetes Metab Res Rev (2012) 1.68
Association of human bocavirus 1 infection with respiratory disease in childhood follow-up study, Finland. Emerg Infect Dis (2012) 1.67
Regulation of enteric endophytic bacterial colonization by plant defenses. Mol Plant Microbe Interact (2005) 1.64
Characterization of human invariant natural killer T subsets in health and disease using a novel invariant natural killer T cell-clonotypic monoclonal antibody, 6B11. Immunology (2007) 1.63
Timing of infant feeding in relation to childhood asthma and allergic diseases. J Allergy Clin Immunol (2012) 1.62
Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales. Appl Environ Microbiol (2004) 1.61
Impact of repeated dietary counseling between infancy and 14 years of age on dietary intakes and serum lipids and lipoproteins: the STRIP study. Circulation (2007) 1.59
Predictive characteristics of diabetes-associated autoantibodies among children with HLA-conferred disease susceptibility in the general population. Diabetes (2009) 1.59
Pancreas organ weight in individuals with disease-associated autoantibodies at risk for type 1 diabetes. JAMA (2012) 1.57
Parental reactions to information about increased genetic risk of type 1 diabetes mellitus in infants. Arch Pediatr Adolesc Med (2006) 1.55
Variation of SNOMED CT coding of clinical research concepts among coding experts. J Am Med Inform Assoc (2007) 1.53
Vitamin D receptor polymorphisms: no association with type 1 diabetes in the Finnish population. Eur J Endocrinol (2003) 1.49
Standardizing nasal nitric oxide measurement as a test for primary ciliary dyskinesia. Ann Am Thorac Soc (2013) 1.49
Immune depletion with cellular mobilization imparts immunoregulation and reverses autoimmune diabetes in nonobese diabetic mice. Diabetes (2009) 1.48
Prevalence and fate of type 1 diabetes-associated autoantibodies in cord blood samples from newborn infants of non-diabetic mothers. Diabetes Metab Res Rev (2002) 1.47
Cord serum lipidome in prediction of islet autoimmunity and type 1 diabetes. Diabetes (2013) 1.47
The Juvenile Diabetes Research Foundation Network for Pancreatic Organ Donors with Diabetes (nPOD) Program: goals, operational model and emerging findings. Pediatr Diabetes (2013) 1.46
Alive and dead Lactobacillus rhamnosus GG decrease tumor necrosis factor-alpha-induced interleukin-8 production in Caco-2 cells. J Nutr (2005) 1.43
Methods, quality control and specimen management in an international multicentre investigation of type 1 diabetes: TEDDY. Diabetes Metab Res Rev (2013) 1.43