Published in Bioinformatics on June 15, 2009
Genotype imputation for genome-wide association studies. Nat Rev Genet (2010) 14.59
Genome-wide association studies in diverse populations. Nat Rev Genet (2010) 4.68
Fast and accurate inference of local ancestry in Latino populations. Bioinformatics (2012) 2.30
New approaches to disease mapping in admixed populations. Nat Rev Genet (2011) 2.22
Estimating kinship in admixed populations. Am J Hum Genet (2012) 1.95
Enhanced statistical tests for GWAS in admixed populations: assessment using African Americans from CARe and a Breast Cancer Consortium. PLoS Genet (2011) 1.94
Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. Am J Hum Genet (2012) 1.75
Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population. Proc Natl Acad Sci U S A (2010) 1.64
Haplotype estimation using sequencing reads. Am J Hum Genet (2013) 1.56
African ancestry and lung function in Puerto Rican children. J Allergy Clin Immunol (2012) 1.54
Efficient genome ancestry inference in complex pedigrees with inbreeding. Bioinformatics (2010) 1.40
Intrahepatic Cholestasis of Pregnancy (ICP) in U.S. Latinas and Chileans: Clinical features, Ancestry Analysis, and Admixture Mapping. PLoS One (2015) 1.40
PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Hum Biol (2012) 1.37
Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies. PLoS Genet (2012) 1.33
Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. Hum Mol Genet (2013) 1.25
Mapping of disease-associated variants in admixed populations. Genome Biol (2011) 1.21
Characterization of Genetic Loci That Affect Susceptibility to Inflammatory Bowel Diseases in African Americans. Gastroenterology (2015) 1.17
Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Curr Biol (2015) 1.14
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (2013) 1.11
Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas. Hum Mol Genet (2012) 1.11
Genome-wide association study and admixture mapping identify different asthma-associated loci in Latinos: the Genes-environments & Admixture in Latino Americans study. J Allergy Clin Immunol (2014) 1.10
The lengths of admixture tracts. Genetics (2014) 1.06
An overview of STRUCTURE: applications, parameter settings, and supporting software. Front Genet (2013) 1.02
Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations. BMC Genet (2012) 1.01
Softwares and methods for estimating genetic ancestry in human populations. Hum Genomics (2013) 1.00
Annotating individual human genomes. Genomics (2011) 0.97
Accurate inference of local phased ancestry of modern admixed populations. Sci Rep (2014) 0.92
Enhanced methods for local ancestry assignment in sequenced admixed individuals. PLoS Comput Biol (2014) 0.91
Whole Genome Sequencing Defines the Genetic Heterogeneity of Familial Pancreatic Cancer. Cancer Discov (2015) 0.90
Nocturnal asthma and the importance of race/ethnicity and genetic ancestry. Am J Respir Crit Care Med (2014) 0.90
Performance of HLA allele prediction methods in African Americans for class II genes HLA-DRB1, -DQB1, and -DPB1. BMC Genet (2014) 0.87
Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method. PLoS One (2013) 0.85
Admixture fine-mapping in African Americans implicates XAF1 as a possible sarcoidosis risk gene. PLoS One (2014) 0.85
Ancestry inference in complex admixtures via variable-length Markov chain linkage models. J Comput Biol (2013) 0.84
Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach. Genetics (2012) 0.83
Fine mapping of chromosome 15q25 implicates ZNF592 in neurosarcoidosis patients. Ann Clin Transl Neurol (2015) 0.83
Spatial localization of recent ancestors for admixed individuals. G3 (Bethesda) (2014) 0.83
The time and place of European admixture in Ashkenazi Jewish history. PLoS Genet (2017) 0.82
Evaluation of HLA polymorphisms in relation to schizophrenia risk and infectious exposure. Schizophr Bull (2012) 0.82
Local ancestry corrects for population structure in Saccharomyces cerevisiae genome-wide association studies. Genetics (2012) 0.81
The role of local ancestry adjustment in association studies using admixed populations. Genet Epidemiol (2014) 0.80
Hybridization in plants: old ideas, new techniques. Plant Physiol (2016) 0.80
Native American ancestry, lung function, and COPD in Costa Ricans. Chest (2014) 0.79
Genetic structure characterization of Chileans reflects historical immigration patterns. Nat Commun (2015) 0.79
Association of NOD2 and IL23R with inflammatory bowel disease in Puerto Rico. PLoS One (2014) 0.78
Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry. BioData Min (2015) 0.77
Extending admixture mapping to nuclear pedigrees: application to sarcoidosis. Genet Epidemiol (2013) 0.77
De novo inference of stratification and local admixture in sequencing studies. BMC Bioinformatics (2013) 0.77
Inferring ancestry from population genomic data and its applications. Front Genet (2014) 0.76
A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data. Bioinformatics (2015) 0.75
A Continuous Correlated Beta Process Model for Genetic Ancestry in Admixed Populations. PLoS One (2016) 0.75
Gun Violence, African Ancestry, and Asthma: A Case-Control Study in Puerto Rican Children. Chest (2016) 0.75
A spatial haplotype copying model with applications to genotype imputation. J Comput Biol (2014) 0.75
Mapping asthma-associated variants in admixed populations. Front Genet (2015) 0.75
A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy. PLoS Genet (2017) 0.75
ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium. BMC Genet (2015) 0.75
Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans. Hum Mol Genet (2016) 0.75
Assessing differences in inhaled corticosteroid response by self-reported race-ethnicity and genetic ancestry among asthmatic subjects. J Allergy Clin Immunol (2016) 0.75
Global and local ancestry in African-Americans: Implications for Alzheimer's disease risk. Alzheimers Dement (2015) 0.75
IL1B-CGTC haplotype is associated with colorectal cancer in admixed individuals with increased African ancestry. Sci Rep (2017) 0.75
Cockroach allergen exposure and plasma cytokines among children in a tropical environment. Ann Allergy Asthma Immunol (2017) 0.75
Inference of population structure using multilocus genotype data. Genetics (2000) 147.76
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature (2007) 144.95
A haplotype map of the human genome. Nature (2005) 105.70
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics (2003) 53.11
A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet (2007) 52.68
Worldwide human relationships inferred from genome-wide patterns of variation. Science (2008) 22.44
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics (2003) 17.73
Genes mirror geography within Europe. Nature (2008) 14.23
Methods for high-density admixture mapping of disease genes. Am J Hum Genet (2004) 12.02
Estimation of individual admixture: analytical and study design considerations. Genet Epidemiol (2005) 11.00
Design and analysis of admixture mapping studies. Am J Hum Genet (2004) 7.20
Admixture mapping for hypertension loci with genome-scan markers. Nat Genet (2005) 6.78
Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet (2006) 5.92
Estimating local ancestry in admixed populations. Am J Hum Genet (2008) 5.90
A whole-genome admixture scan finds a candidate locus for multiple sclerosis susceptibility. Nat Genet (2005) 5.02
GERBIL: Genotype resolution and block identification using likelihood. Proc Natl Acad Sci U S A (2004) 4.36
Latino populations: a unique opportunity for the study of race, genetics, and social environment in epidemiological research. Am J Public Health (2005) 3.50
Analyses and comparison of accuracy of different genotype imputation methods. PLoS One (2008) 3.41
Long-range LD can confound genome scans in admixed populations. Am J Hum Genet (2008) 3.06
Recent genetic selection in the ancestral admixture of Puerto Ricans. Am J Hum Genet (2007) 2.72
On the inference of ancestries in admixed populations. Genome Res (2008) 2.27
Effect of genetic divergence in identifying ancestral origin using HAPAA. Genome Res (2008) 2.15
Genotype error detection using Hidden Markov Models of haplotype diversity. J Comput Biol (2008) 1.57
Whole-genome patterns of common DNA variation in three human populations. Science (2005) 21.22
Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet (2011) 13.25
A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet (2006) 12.45
Identifying personal genomes by surname inference. Science (2013) 10.79
Estimating local ancestry in admixed populations. Am J Hum Genet (2008) 5.90
Leveraging the HapMap correlation structure in association studies. Am J Hum Genet (2007) 3.57
Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls. Circ Cardiovasc Genet (2010) 3.15
Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal. Cell Cycle (2011) 3.11
Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma. Nat Genet (2009) 2.73
Genomic privacy and limits of individual detection in a pool. Nat Genet (2009) 2.60
Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32. Nat Genet (2010) 2.37
Fast and accurate inference of local ancestry in Latino populations. Bioinformatics (2012) 2.30
On the inference of ancestries in admixed populations. Genome Res (2008) 2.27
A model-based approach for analysis of spatial structure in genetic data. Nat Genet (2012) 2.02
Leveraging genetic variability across populations for the identification of causal variants. Am J Hum Genet (2010) 2.00
Efficient reconstruction of haplotype structure via perfect phylogeny. J Bioinform Comput Biol (2003) 1.96
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque. Nat Genet (2011) 1.92
Tag SNP selection in genotype data for maximizing SNP prediction accuracy. Bioinformatics (2005) 1.73
A randomization test for controlling population stratification in whole-genome association studies. Am J Hum Genet (2007) 1.73
Estimating and interpreting FST: the impact of rare variants. Genome Res (2013) 1.73
Evidence of widespread selection on standing variation in Europe at height-associated SNPs. Nat Genet (2012) 1.71
Accurate estimation of expression levels of homologous genes in RNA-seq experiments. J Comput Biol (2011) 1.69
Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol (2010) 1.63
Polymorphisms in the estrogen receptor 1 and vitamin C and matrix metalloproteinase gene families are associated with susceptibility to lymphoma. PLoS One (2008) 1.61
miRNAkey: a software for microRNA deep sequencing analysis. Bioinformatics (2010) 1.41
Probabilistic inference of viral quasispecies subject to recombination. J Comput Biol (2013) 1.40
Genome-wide association identifies candidate genes that influence the human electroencephalogram. Proc Natl Acad Sci U S A (2010) 1.38
Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia. Blood (2012) 1.26
A generic coalescent-based framework for the selection of a reference panel for imputation. Genet Epidemiol (2010) 1.26
A New Stress-Based Model of Political Extremism: Personal Exposure to Terrorism, Psychological Distress, and Exclusionist Political Attitudes. J Conflict Resolut (2009) 1.17
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (2013) 1.11
Matrin 3 binds and stabilizes mRNA. PLoS One (2011) 1.11
Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP. Genome Res (2005) 1.05
Pediatric onset Crohn's colitis is characterized by genotype-dependent age-related susceptibility. Inflamm Bowel Dis (2007) 1.01
HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinformatics (2007) 0.98
GEVALT: an integrated software tool for genotype analysis. BMC Bioinformatics (2007) 0.98
Dynamic network topology changes in functional modules predict responses to oxidative stress in yeast. Mol Biosyst (2009) 0.96
Phylogenetic inference via sequential Monte Carlo. Syst Biol (2012) 0.95
A note on phasing long genomic regions using local haplotype predictions. J Bioinform Comput Biol (2006) 0.93
Joint analysis of multiple metagenomic samples. PLoS Comput Biol (2012) 0.93
Haplotype reconstruction using perfect phylogeny and sequence data. BMC Bioinformatics (2012) 0.93
Algorithms for efficient near-perfect phylogenetic tree reconstruction in theory and practice. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.92
Pedigree reconstruction using identity by descent. J Comput Biol (2011) 0.91
Fast lossless compression via cascading Bloom filters. BMC Bioinformatics (2014) 0.90
Presymptomatic risk assessment for chronic non-communicable diseases. PLoS One (2010) 0.90
A search for overlapping genetic susceptibility loci between non-Hodgkin lymphoma and autoimmune diseases. Genomics (2011) 0.90
Enhanced localization of genetic samples through linkage-disequilibrium correction. Am J Hum Genet (2013) 0.89
PRRC2A and BCL2L11 gene variants influence risk of non-Hodgkin lymphoma: results from the InterLymph consortium. Blood (2012) 0.89
Rare variant association testing under low-coverage sequencing. Genetics (2013) 0.88
CNVeM: copy number variation detection using uncertainty of read mapping. J Comput Biol (2013) 0.87
Association mapping and significance estimation via the coalescent. Am J Hum Genet (2008) 0.87
ResBoost: characterizing and predicting catalytic residues in enzymes. BMC Bioinformatics (2009) 0.87
Risk factors for perianal Crohn's disease: the role of genotype, phenotype, and ethnicity. Am J Gastroenterol (2007) 0.86
Novel associations for coronary artery disease derived from genome wide association studies are not associated with increased carotid intima-media thickness, suggesting they do not act via early atherosclerosis or vessel remodeling. Atherosclerosis (2011) 0.86
Haplotype inference in complex pedigrees. J Comput Biol (2010) 0.85
Learning natural selection from the site frequency spectrum. Genetics (2013) 0.85
Chemokine polymorphisms and lymphoma: a pooled analysis. Leuk Lymphoma (2010) 0.84
Using DNA pools for genotyping trios. Nucleic Acids Res (2006) 0.84
eALPS: estimating abundance levels in pooled sequencing using available genotyping data. J Comput Biol (2013) 0.79
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinformatics (2011) 0.78
MGMR: leveraging RNA-Seq population data to optimize expression estimation. BMC Bioinformatics (2012) 0.78
Relation of genetic profile and novel circulating biomarkers with coronary plaque phenotype as determined by intravascular ultrasound: rationale and design of the ATHEROREMO-IVUS study. EuroIntervention (2014) 0.77
Affirmation, acknowledgment of in-group responsibility, group-based guilt, and support for reparative measures. J Pers Soc Psychol (2011) 0.77
Detection of molecular paths associated with insulitis and type 1 diabetes in non-obese diabetic mouse. PLoS One (2009) 0.77
A specific RAD51 haplotype increases breast cancer risk in Jewish non-Ashkenazi high-risk women. Eur J Cancer (2006) 0.76
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinformatics (2017) 0.76
Authoritarianism, perceived threat and exclusionism on the eve of the Disengagement: Evidence from Gaza. Int J Intercult Relat (2009) 0.75
When Ideology Meets Conflict-Related Content: Influences on Emotion Generation and Regulation. Emotion (2017) 0.75