Published in New Phytol on November 19, 2009
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci U S A (2011) 2.97
Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines. Proc Natl Acad Sci U S A (2012) 2.20
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics (2012) 1.49
Homoeolog expression bias and expression level dominance in allopolyploid cotton. Heredity (Edinb) (2012) 1.48
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC Genomics (2015) 1.46
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. BMC Genomics (2012) 1.36
Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biol Evol (2012) 1.36
mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat. Plant Cell (2014) 1.33
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa. Plant Cell (2012) 1.13
Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding. BMC Plant Biol (2012) 1.06
Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners. Genome Biol (2010) 1.02
Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids. PLoS One (2012) 0.99
Tetraploidization events by chromosome doubling of nucellar cells are frequent in apomictic citrus and are dependent on genotype and environment. Ann Bot (2011) 0.99
Polyploidy and novelty: Gottlieb's legacy. Philos Trans R Soc Lond B Biol Sci (2014) 0.99
Allopolyploidy, diversification, and the Miocene grassland expansion. Proc Natl Acad Sci U S A (2014) 0.95
Escape from preferential retention following repeated whole genome duplications in plants. Front Plant Sci (2012) 0.94
Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat. BMC Genomics (2014) 0.94
Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines. BMC Biol (2012) 0.94
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. Plant Cell (2016) 0.92
Transcriptome and complexity-reduced, DNA-based identification of intraspecies single-nucleotide polymorphisms in the polyploid Gossypium hirsutum L. G3 (Bethesda) (2014) 0.92
Unravelling gene expression of complex crop genomes. Heredity (Edinb) (2012) 0.90
Polyploidy and the petal transcriptome of Gossypium. BMC Plant Biol (2014) 0.90
Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Genetics (2011) 0.87
The legacy of diploid progenitors in allopolyploid gene expression patterns. Philos Trans R Soc Lond B Biol Sci (2014) 0.86
Somatic hybridization for citrus rootstock breeding: an effective tool to solve some important issues of the Mediterranean citrus industry. Plant Cell Rep (2011) 0.86
The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize. Genome Res (2014) 0.85
Nucleolar dominance and different genome behaviors in hybrids and allopolyploids. Plant Cell Rep (2013) 0.84
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.). PLoS One (2014) 0.83
The timetable for allopolyploidy in flowering plants. Ann Bot (2013) 0.82
Polyploids and hybrids in changing environments: winners or losers in the struggle for adaptation? Heredity (Edinb) (2013) 0.82
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. Nucleic Acids Res (2014) 0.81
Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella. Mol Biol Evol (2015) 0.80
Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq. Front Plant Sci (2015) 0.80
Gene-expression novelty in allopolyploid cotton: a proteomic perspective. Genetics (2015) 0.78
Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC Evol Biol (2014) 0.78
Cytonuclear evolution of rubisco in four allopolyploid lineages. Mol Biol Evol (2014) 0.78
Polyploids as a "model system" for the study of heterosis. Plant Reprod (2013) 0.78
Multiple mechanisms and challenges for the application of allopolyploidy in plants. Int J Mol Sci (2012) 0.77
The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents. Plant Cell Physiol (2015) 0.77
Transcriptome shock invokes disruption of parental expression-conserved genes in tetraploid wheat. Sci Rep (2016) 0.75
Genome-Wide Gene Expressions Respond Differently to A-subgenome Origins in Brassica napus Synthetic Hybrids and Natural Allotetraploid. Front Plant Sci (2016) 0.75
Evolutionary and Functional Analysis of Membrane-Bound NAC Transcription Factor Genes in Soybean. Plant Physiol (2016) 0.75
Elucidation of Nuclear and Organellar Genomes of Gossypium hirsutum: Furthering Studies of Species Evolution and Applications for Crop Improvement. Biology (Basel) (2013) 0.75
Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids. PLoS One (2015) 0.75
The abundance of homoeologue transcripts is disrupted by hybridization and is partially restored by genome doubling in synthetic hexaploid wheat. BMC Genomics (2017) 0.75
Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. BMC Genomics (2016) 0.75
Comparative analysis of NBS-LRR genes and their response to Aspergillus flavus in Arachis. PLoS One (2017) 0.75
A New Sythetic Hybrid (A1D5) between Gossypium herbaceum and G. raimondii and Its Morphological, Cytogenetic, Molecular Characterization. PLoS One (2017) 0.75
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo (2017) 0.75
Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.). G3 (Bethesda) (2016) 0.75
MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities. Plant Mol Biol (2017) 0.75
Biological action in Read-Write genome evolution. Interface Focus (2017) 0.75
Identification of all homoeologous chromosomes of newly synthetic allotetraploid Cucumis × hytivus and its wild parent reveals stable subgenome structure. Chromosoma (2017) 0.75
Segregation distortion and genome-wide digenic interactions affect transmission of introgressed chromatin from wild cotton species. Theor Appl Genet (2017) 0.75
Molecular characterisation of two homoeologous elicitor-responsive lipin genes in cotton. Mol Genet Genomics (2013) 0.75
Polyploidy and genome evolution in plants. Curr Opin Plant Biol (2005) 5.30
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci U S A (2003) 4.62
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00
Evolutionary genetics of genome merger and doubling in plants. Annu Rev Genet (2008) 3.45
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics (2004) 2.84
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res (2006) 2.69
Rate variation among nuclear genes and the age of polyploidy in Gossypium. Mol Biol Evol (2003) 2.64
Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol (2005) 2.53
Gene duplication and evolutionary novelty in plants. New Phytol (2009) 2.46
Novel patterns of gene expression in polyploid plants. Trends Genet (2005) 2.24
A global assembly of cotton ESTs. Genome Res (2006) 2.18
Toward sequencing cotton (Gossypium) genomes. Plant Physiol (2007) 2.16
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics (2004) 2.08
Epigenetic phenomena and the evolution of plant allopolyploids. Mol Phylogenet Evol (2003) 1.95
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. Am J Bot (2002) 1.90
Epigenetics and plant evolution. New Phytol (2005) 1.87
Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics (2007) 1.84
Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics (2009) 1.71
Genomic expression dominance in allopolyploids. BMC Biol (2009) 1.71
A bountiful harvest: genomic insights into crop domestication phenotypes. Annu Rev Plant Biol (2013) 1.52
A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics (2006) 1.51
Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proc Natl Acad Sci U S A (2008) 1.38
A majority of cotton genes are expressed in single-celled fiber. Planta (2007) 1.38
Homoeologous nonreciprocal recombination in polyploid cotton. New Phytol (2009) 1.37
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. BMC Genomics (2012) 1.36
A draft physical map of a D-genome cotton species (Gossypium raimondii). BMC Genomics (2010) 1.32
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theor Appl Genet (2005) 1.29
The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. PLoS Genet (2008) 1.28
Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae). Am J Bot (2004) 1.24
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proc Natl Acad Sci U S A (2009) 1.17
Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). Plant J (2007) 1.17
Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense. Evol Dev (2008) 1.15
Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. J Integr Plant Biol (2010) 1.15
Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics (2005) 1.13
Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics (2007) 1.12
Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered (2006) 1.12
Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution (2003) 1.09
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. G3 (Bethesda) (2013) 1.07
Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics (2008) 1.06
Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). BMC Genomics (2009) 1.05
Intron size and genome size in plants. Mol Biol Evol (2002) 1.05
Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theor Appl Genet (2005) 1.00
Targeted sequence capture as a powerful tool for evolutionary analysis. Am J Bot (2012) 0.98
Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium). Mol Biol Evol (2002) 0.96
Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. J Hered (2009) 0.95
Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. New Phytol (2013) 0.94
Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium. Genome (2008) 0.94
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence. Genome Biol Evol (2014) 0.94
A phylogenetic analysis of indel dynamics in the cotton genus. Mol Biol Evol (2008) 0.92
Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea. Am J Bot (2008) 0.91
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies. Mol Biol Evol (2014) 0.90
The history and disposition of transposable elements in polyploid Gossypium. Genome (2010) 0.90
Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. Genome Biol Evol (2013) 0.89
Multiple patterns of rDNA evolution following polyploidy in Oryza. Mol Phylogenet Evol (2009) 0.89
Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Genetics (2011) 0.87
PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS. Econ Bot (2006) 0.85
Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L. Planta Med (2007) 0.83
Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta (2014) 0.83
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proc Natl Acad Sci U S A (2011) 0.82
CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol (2014) 0.81
Tobacco genomes quickly go up in smoke. New Phytol (2007) 0.80
The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco. Mol Biol Evol (2012) 0.79
The hairy problem of epigenetics in evolution. New Phytol (2011) 0.78
Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives. Evolution (2006) 0.78
Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences. Am J Bot (2003) 0.77
Drivers and dynamics of diversity in plant genomes. New Phytol (2014) 0.76