Published in Mol Biol Evol on December 18, 2009
Autosomal and mtDNA Markers Affirm the Distinctiveness of Lions in West and Central Africa. PLoS One (2015) 1.50
Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions. Proc Biol Sci (2011) 1.21
Microsatellite polymorphism in the sexually transmitted human pathogen Trichomonas vaginalis indicates a genetically diverse parasite. Mol Biochem Parasitol (2010) 1.11
Fc γ receptor IIIB (FcγRIIIB) polymorphisms are associated with clinical malaria in Ghanaian children. PLoS One (2012) 0.94
Population structure and landscape genetics of two endangered frog species of genus Odorrana: different scenarios on two islands. Heredity (Edinb) (2012) 0.93
Genetic portrait of Tamil non-tribal and Irula tribal population using Y chromosome STR markers. Int J Legal Med (2015) 0.92
Population structure of hyperinvasive serotype 12F, clonal complex 218 Streptococcus pneumoniae revealed by multilocus boxB sequence typing. Infect Genet Evol (2011) 0.91
Genetic divergence and signatures of natural selection in marginal populations of a keystone, long-lived conifer, Eastern White Pine (Pinus strobus) from Northern Ontario. PLoS One (2014) 0.85
Population structure of Cynara cardunculus complex and the origin of the conspecific crops artichoke and cardoon. Ann Bot (2013) 0.84
Autosomal STRs provide genetic evidence for the hypothesis that Tai people originate from southern China. PLoS One (2013) 0.83
Single nucleotide polymorphisms reveal genetic structuring of the carpathian newt and provide evidence of interspecific gene flow in the nuclear genome. PLoS One (2014) 0.82
Evolution of nickel hyperaccumulation and serpentine adaptation in the Alyssum serpyllifolium species complex. Heredity (Edinb) (2016) 0.82
Genes Left Behind: Climate Change Threatens Cryptic Genetic Diversity in the Canopy-Forming Seaweed Bifurcaria bifurcata. PLoS One (2015) 0.82
Differing lifestyles of Staphylococcus epidermidis as revealed through Bayesian clustering of multilocus sequence types. Infect Genet Evol (2013) 0.81
Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex. Sci Rep (2014) 0.81
Population genetic structure and demographic history of Atrina pectinata based on mitochondrial DNA and microsatellite markers. PLoS One (2014) 0.81
The peopling of Greenland: further insights from the analysis of genetic diversity using autosomal and X-chromosomal markers. Eur J Hum Genet (2014) 0.80
Gene polymorphisms of novel immunotolerant molecule BTLA: distribution of alleles, genotypes and haplotypes in Polish Caucasian population. Arch Immunol Ther Exp (Warsz) (2014) 0.80
Human leukocyte antigen class I haplotypes of human immunodeficiency virus-1-infected persons on Likoma Island, Malawi. Hum Immunol (2011) 0.80
Polymorphisms in the RNASE3 gene are associated with susceptibility to cerebral malaria in Ghanaian children. PLoS One (2011) 0.80
Ancient Humans Influenced the Current Spatial Genetic Structure of Common Walnut Populations in Asia. PLoS One (2015) 0.79
Exome sequencing reveals genetic differentiation due to high-altitude adaptation in the Tibetan cashmere goat (Capra hircus). BMC Genomics (2016) 0.79
Genetic analysis of 12 X-chromosome STRs in Western Mediterranean populations. Int J Legal Med (2014) 0.79
Assessing the cryptic invasion of a domestic conspecific: American mink in their native range. Ecol Evol (2013) 0.79
Genetic diversity of 15 autosomal short tandem repeats loci using the AmpFLSTR(®) Identifiler™ kit in a Bhil Tribe Population from Gujarat state, India. Indian J Hum Genet (2014) 0.79
Genetic relationships between Atlantic and Pacific populations of the notothenioid fish Eleginops maclovinus: the footprints of Quaternary glaciations in Patagonia. Heredity (Edinb) (2015) 0.79
Genetic diversity and population structure of Sitodiplosis mosellana in Northern China. PLoS One (2013) 0.77
SNP mining in Crassostrea gigas EST data: transferability to four other Crassostrea species, phylogenetic inferences and outlier SNPs under selection. PLoS One (2014) 0.77
Genetic differentiation and species cohesion in two widespread Central American Begonia species. Heredity (Edinb) (2013) 0.77
Comparative phylogeographic study of Hosta sieboldiana and Hosta albomarginata (Asparagaceae) in Japan. Ecol Evol (2013) 0.77
Strong population genetic structure and contrasting demographic histories for the small-spotted catshark (Scyliorhinus canicula) in the Mediterranean Sea. Heredity (Edinb) (2014) 0.76
Population structure of guppies in north-eastern Venezuela, the area of putative incipient speciation. BMC Evol Biol (2014) 0.76
Revealing hidden species diversity in closely related species using nuclear SNPs, SSRs and DNA sequences - a case study in the tree genus Milicia. BMC Evol Biol (2016) 0.76
Microsatellite marker analysis of Haemonchus contortus populations from Pakistan suggests that frequent benzimidazole drug treatment does not result in a reduction of overall genetic diversity. Parasit Vectors (2016) 0.76
Is isolation by adaptation driving genetic divergence among proximate Dolly Varden char populations? Ecol Evol (2014) 0.76
Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers. PLoS One (2016) 0.75
Genetic differentiation of the regional Plutella xylostella populations across the Taiwan Strait based on identification of microsatellite markers. Ecol Evol (2015) 0.75
High resolution human leukocyte antigen class I allele frequencies and HIV-1 infection associations in Chinese Han and Uyghur cohorts. PLoS One (2012) 0.75
Inbreeding Ratio and Genetic Relationships among Strains of the Western Clawed Frog, Xenopus tropicalis. PLoS One (2015) 0.75
Low genetic diversity but strong population structure reflects multiple introductions of western flower thrips (Thysanoptera: Thripidae) into China followed by human-mediated spread. Evol Appl (2017) 0.75
Genetic polymorphism study at 15 autosomal locus in central Indian population. Springerplus (2015) 0.75
Diversity and genetic structure analysis of three Amazonian Amerindian populations of Colombia. Colomb Med (Cali) (2012) 0.75
Introgressing Subgenome Components from Brassica rapa and B. carinata to B. juncea for Broadening Its Genetic Base and Exploring Intersubgenomic Heterosis. Front Plant Sci (2016) 0.75
Genetic Diversity and Population Structure of Whitebark Pine (Pinus albicaulis Engelm.) in Western North America. PLoS One (2016) 0.75
Population Structure and Evolution after Speciation of the Hokkaido Salamander (Hynobius retardatus). PLoS One (2016) 0.75
Comparative Analysis of the Pattern of Population Genetic Diversity in Three Indo-West Pacific Rhizophora Mangrove Species. Front Plant Sci (2016) 0.75
Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions. PLoS One (2017) 0.75
Fine-scale assessment of genetic diversity of trembling aspen in northwestern North America. BMC Evol Biol (2016) 0.75
Genetic variation and phylogeographic structure of the cotton aphid, Aphis gossypii, based on mitochondrial DNA and microsatellite markers. Sci Rep (2017) 0.75
Introgressive Hybridization and the Evolution of Lake-Adapted Catostomid Fishes. PLoS One (2016) 0.75
Analysis of Geographic and Pairwise Distances among Chinese Cashmere Goat Populations. Asian-Australas J Anim Sci (2013) 0.75
Genetic evaluation of the evolutionary distinctness of a federally endangered butterfly, Lange's Metalmark. BMC Evol Biol (2015) 0.75
Population Structure in the Roundtail Chub (Gila robusta Complex) of the Gila River Basin as Determined by Microsatellites: Evolutionary and Conservation Implications. PLoS One (2015) 0.75
Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi. Infect Genet Evol (2016) 0.75
Strong Genetic Differentiation of Submerged Plant Populations across Mountain Ranges: Evidence from Potamogeton pectinatus in Iran. PLoS One (2016) 0.75
The great diversity of major histocompatibility complex class II genes in Philippine native cattle. Meta Gene (2014) 0.75
Population genetic structure of the predatory, social wasp Vespula pensylvanica in its native and invasive range. Ecol Evol (2015) 0.75
Contrasting Effects of Historical Sea Level Rise and Contemporary Ocean Currents on Regional Gene Flow of Rhizophora racemosa in Eastern Atlantic Mangroves. PLoS One (2016) 0.75
Genetic diversity of and differentiation among five populations of blunt snout bream (Megalobrama amblycephala) revealed by SRAP markers: implications for conservation and management. PLoS One (2014) 0.75
Effect of domestication on the genetic diversity and structure of Saccharina japonica populations in China. Sci Rep (2017) 0.75
Ethiopian population dermatoglyphic study reveals linguistic stratification of diversity. PLoS One (2015) 0.75
Genetic analysis of Indian tasar silkmoth (Antheraea mylitta) populations. Sci Rep (2015) 0.75
Population genetic analysis of a medicinally significant Australian rainforest tree, Fontainea picrosperma C.T. White (Euphorbiaceae): biogeographic patterns and implications for species domestication and plantation establishment. BMC Plant Biol (2016) 0.75
Evidence for genetic variation in Natterer's bats (Myotis nattereri) across three regions in Germany but no evidence for co-variation with their associated astroviruses. BMC Evol Biol (2017) 0.75
The Adaptive Change of HLA-DRB1 Allele Frequencies Caused by Natural Selection in a Mongolian Population That Migrated to the South of China. PLoS One (2015) 0.75
Genetic Diversity in Gorkhas: an Autosomal STR Study. Sci Rep (2016) 0.75
An Assessment of Genetic Diversity and Drought Tolerance in Argan Tree (Argania spinosa) Populations: Potential for the Development of Improved Drought Tolerance. Front Plant Sci (2017) 0.75
Population genetics of the Manila clam (Ruditapes philippinarum) introduced in North America and Europe. Sci Rep (2017) 0.75
Use of microsatellite and SNP markers for biotype characterization in Hessian fly. J Insect Sci (2015) 0.75
Genetic variation study of 12 X chromosomal STR in central Thailand population. Int J Legal Med (2016) 0.75
Population structure and historical demography of Dipteronia dyeriana (Sapindaceae), an extremely narrow palaeoendemic plant from China: implications for conservation in a biodiversity hot spot. Heredity (Edinb) (2017) 0.75
The colonization and divergence patterns of Brandt's vole (Lasiopodomys brandtii) populations reveal evidence of genetic surfing. BMC Evol Biol (2017) 0.75
Population structure of elephant foot yams (Amorphophallus paeoniifolius (Dennst.) Nicolson) in Asia. PLoS One (2017) 0.75
Genetic differentiation and population structure of five ethnic groups of Punjab (North-West India). Mol Genet Genomics (2016) 0.75
Temperature-sensitive phenotype caused by natural mutation in Capsicum latescent in two tropical regions. J Plant Res (2013) 0.75
Genetic diversity study on 12 X-STR loci of investigator® Argus X STR kit in Bangladeshi population. Int J Legal Med (2016) 0.75
Genetic polymorphism of 15 STR loci in El Salvador. Int J Legal Med (2015) 0.75
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics (1978) 30.05
Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A (1973) 26.31
The genetical structure of populations. Ann Eugen (1951) 15.13
Sampling variances of heterozygosity and genetic distance. Genetics (1974) 11.91
Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci U S A (1995) 9.25
Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol (1983) 7.45
Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol Ecol (2002) 3.62
A novel measure of genetic distance for highly polymorphic tandem repeat loci. Mol Biol Evol (1995) 2.65
The expansion of conservation genetics. Nat Rev Genet (2004) 2.38
Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica (2008) 1.92
Selection in finite populations with multiple alleles. 3. Genetic divergence with centripetal selection and mutation. Genetics (1972) 1.26
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform (2004) 72.40
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform (2008) 24.69
Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A (2004) 20.53
MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis. Bioinformatics (2012) 13.09
Estimation of divergence times for major lineages of primate species. Mol Biol Evol (2003) 3.52
Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci U S A (2002) 2.63
Extensive gains and losses of olfactory receptor genes in mammalian evolution. PLoS One (2007) 2.35
Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci U S A (2005) 2.32
Evolution of olfactory receptor genes in the human genome. Proc Natl Acad Sci U S A (2003) 1.97
Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet (2006) 1.94
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A (2009) 1.94
Genomic drift and copy number variation of sensory receptor genes in humans. Proc Natl Acad Sci U S A (2007) 1.80
Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proc Natl Acad Sci U S A (2002) 1.79
Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proc Natl Acad Sci U S A (2006) 1.72
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc Natl Acad Sci U S A (2009) 1.70
False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol Evol (2004) 1.64
Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proc Natl Acad Sci U S A (2004) 1.62
Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene (2005) 1.55
Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Mol Biol Evol (2002) 1.50
Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Mol Biol Evol (2002) 1.50
Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proc Natl Acad Sci U S A (2007) 1.48
Evolutionary change of the numbers of homeobox genes in bilateral animals. Mol Biol Evol (2005) 1.37
Replication origin of mitochondrial DNA in insects. Genetics (2005) 1.37
Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene (2004) 1.32
The N-acylethanolamine-hydrolyzing acid amidase (NAAA). Chem Biodivers (2007) 1.31
Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol (2010) 1.31
Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian trees. J Mol Evol (2003) 1.30
Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol (2003) 1.24
Heterogeneous but conserved natural killer receptor gene complexes in four major orders of mammals. Proc Natl Acad Sci U S A (2006) 1.21
Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA. Genetics (2008) 1.20
Origins and evolution of microRNA genes in plant species. Genome Biol Evol (2012) 1.20
Origin and evolution of influenza virus hemagglutinin genes. Mol Biol Evol (2002) 1.19
Concerted and nonconcerted evolution of the Hsp70 gene superfamily in two sibling species of nematodes. Mol Biol Evol (2003) 1.17
Statistics and truth in phylogenomics. Mol Biol Evol (2011) 1.12
Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Mol Biol Evol (2003) 1.11
The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution. Nucleic Acids Res (2007) 1.10
Purifying selection and birth-and-death evolution in the histone H4 gene family. Mol Biol Evol (2002) 1.09
Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates. Immunogenetics (2008) 1.09
Rapid expansion of killer cell immunoglobulin-like receptor genes in primates and their coevolution with MHC Class I genes. Gene (2005) 1.09
Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers. Proc Natl Acad Sci U S A (2008) 1.05
Origins and evolution of the formin multigene family that is involved in the formation of actin filaments. Mol Biol Evol (2008) 1.03
Ultraconserved coding regions outside the homeobox of mammalian Hox genes. BMC Evol Biol (2008) 0.98
Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues. Immunogenetics (2005) 0.98
Adaptive evolution of variable region genes encoding an unusual type of immunoglobulin in camelids. Mol Biol Evol (2002) 0.97
A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex. Genetics (2005) 0.96
Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication. Immunogenetics (2004) 0.96
Origin and evolution of the chicken leukocyte receptor complex. Proc Natl Acad Sci U S A (2005) 0.95
Macrophage migration inhibitory factor (MIF) of jawed and jawless fishes: implications for its evolutionary origin. Dev Comp Immunol (2003) 0.89
Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biol Evol (2010) 0.88
MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation. Bioinformatics (2014) 0.87
Origin and speciation of haplochromine fishes in East African crater lakes investigated by the analysis of their mtDNA, Mhc genes, and SINEs. Mol Biol Evol (2003) 0.87
Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Mol Biol Evol (2010) 0.86
Experimental study on the hemostatc activity of Pollen Typhae: a traditional folk medicine used by external and oral application. Blood Coagul Fibrinolysis (2011) 0.86
Genomic drift and evolution of microsatellite DNAs in human populations. Mol Biol Evol (2009) 0.85
Identification and characterization of a TAP-family gene in the lamprey. Immunogenetics (2003) 0.84
Origin and affinities of indigenous Siberian populations as revealed by HLA class II gene frequencies. Hum Genet (2002) 0.84
Phylogenetic placement of metagenomic reads using the minimum evolution principle. BMC Genomics (2015) 0.83
Phylogenetic relationships between Sophophora and Lordiphosa, with proposition of a hypothesis on the vicariant divergences of tropical lineages between the Old and New Worlds in the family Drosophilidae. Mol Phylogenet Evol (2011) 0.83
Phylogeny of the Drosophila immigrans species group (Diptera: Drosophilidae) based on Adh and Gpdh sequences. Zoolog Sci (2007) 0.81
Phylogenetic relationships among East African haplochromine fish as revealed by short interspersed elements (SINEs). J Mol Evol (2004) 0.81
Eighty percent of proteins are different between humans and chimpanzees. Gene (2005) 0.79
Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Mol Immunol (2009) 0.79
A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes. Nucleic Acids Res (2005) 0.79
Is positive selection responsible for the evolution of a duplicate UV-sensitive opsin gene in Heliconius butterflies? Proc Natl Acad Sci U S A (2010) 0.78
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Unusual evolution of interspersed repeat sequences in the Drosophila ananassae subgroup. Mol Biol Evol (2006) 0.78
Mhc class I genes of the cichlid fish Oreochromis niloticus. Immunogenetics (2006) 0.78
Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila. J Mol Evol (2013) 0.78
Cold tolerance and metabolic rate increased by cold acclimation in Drosophila albomicans from natural populations. Genes Genet Syst (2013) 0.76
Extensive differences in antifungal immune response in two Drosophila species revealed by comparative transcriptome analysis. Int J Genomics (2013) 0.76
Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations. Proc Natl Acad Sci U S A (2013) 0.75