Published in J Biosci Bioeng on August 14, 2009
The immediate upstream region of the 5'-UTR from the AUG start codon has a pronounced effect on the translational efficiency in Arabidopsis thaliana. Nucleic Acids Res (2013) 0.94
Translational Regulation of Cytoplasmic mRNAs. Arabidopsis Book (2013) 0.93
Comparison of CRISPR/Cas9 expression constructs for efficient targeted mutagenesis in rice. Plant Mol Biol (2015) 0.91
Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner. Nucleic Acids Res (2015) 0.81
RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex. Nucleic Acids Res (2012) 0.80
5' and 3' Untranslated Regions Strongly Enhance Performance of Geminiviral Replicons in Nicotiana benthamiana Leaves. Front Plant Sci (2016) 0.78
Effect of ATG initiation codon context motifs on the efficiency of translation of mRNA derived from exogenous genes in the transgenic silkworm, Bombyx mori. Springerplus (2014) 0.78
Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest. Nucleic Acids Res (2017) 0.75
Biodegradation of γ-hexachlorocyclohexane by transgenic hairy root cultures of Cucurbita moschata that accumulate recombinant bacterial LinA. Plant Cell Rep (2016) 0.75
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature (2006) 24.29
Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res (2011) 6.88
MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom (2010) 6.16
ZO-1 and ZO-2 independently determine where claudins are polymerized in tight-junction strand formation. Cell (2006) 4.61
Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res (2006) 4.25
Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol Microbiol (2002) 3.68
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 3.41
Radixin deficiency causes conjugated hyperbilirubinemia with loss of Mrp2 from bile canalicular membranes. Nat Genet (2002) 3.06
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem (2005) 2.98
Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics (2006) 2.92
Informatics for unveiling hidden genome signatures. Genome Res (2003) 2.60
Rho-dependent and -independent activation mechanisms of ezrin/radixin/moesin proteins: an essential role for polyphosphoinositides in vivo. J Cell Sci (2002) 2.09
Metabolite annotations based on the integration of mass spectral information. Plant J (2008) 1.97
Establishment and characterization of cultured epithelial cells lacking expression of ZO-1. J Biol Chem (2004) 1.94
Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples. DNA Res (2006) 1.84
KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research. Plant Cell Physiol (2011) 1.82
Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants. Proc Natl Acad Sci U S A (2002) 1.77
YAP is a candidate oncogene for esophageal squamous cell carcinoma. Carcinogenesis (2010) 1.75
Deficiency of zonula occludens-1 causes embryonic lethal phenotype associated with defected yolk sac angiogenesis and apoptosis of embryonic cells. Mol Biol Cell (2008) 1.63
Achlorhydria by ezrin knockdown: defects in the formation/expansion of apical canaliculi in gastric parietal cells. J Cell Biol (2005) 1.46
Arabidopsis CDKA;1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis. Plant J (2006) 1.46
A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons. Plant J (2005) 1.41
Phosphorylation of retinoblastoma-related protein by the cyclin D/cyclin-dependent kinase complex is activated at the G1/S-phase transition in tobacco. Plant Cell (2002) 1.35
Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis. DNA Res (2008) 1.32
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res (2010) 1.30
A phylogenomic study of the OCTase genes in Pseudomonas syringae pathovars: the horizontal transfer of the argK-tox cluster and the evolutionary history of OCTase genes on their genomes. J Mol Evol (2002) 1.29
Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal. Mol Microbiol (2008) 1.29
VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant J (2011) 1.27
Functional analysis of soybean genes involved in flavonoid biosynthesis by virus-induced gene silencing. Plant Biotechnol J (2007) 1.20
tRNADB-CE: tRNA gene database curated manually by experts. Nucleic Acids Res (2008) 1.16
IQGAP3 regulates cell proliferation through the Ras/ERK signalling cascade. Nat Cell Biol (2008) 1.14
The HSP terminator of Arabidopsis thaliana increases gene expression in plant cells. Plant Cell Physiol (2009) 1.12
Frequent silencing of protocadherin 17, a candidate tumour suppressor for esophageal squamous cell carcinoma. Carcinogenesis (2010) 1.11
Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies. Plant Physiol (2006) 1.11
Arabidopsis CYP94B3 encodes jasmonyl-L-isoleucine 12-hydroxylase, a key enzyme in the oxidative catabolism of jasmonate. Plant Cell Physiol (2011) 1.08
Effect of tourniquet application on deep vein thrombosis after total knee arthroplasty. Arch Orthop Trauma Surg (2006) 1.08
The Arabidopsis gene CAD1 controls programmed cell death in the plant immune system and encodes a protein containing a MACPF domain. Plant Cell Physiol (2005) 1.06
Contribution of NAC transcription factors to plant adaptation to land. Science (2014) 1.06
Self-Organizing Map (SOM) unveils and visualizes hidden sequence characteristics of a wide range of eukaryote genomes. Gene (2005) 1.05
Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry. Anal Bioanal Chem (2008) 1.04
tRNADB-CE 2011: tRNA gene database curated manually by experts. Nucleic Acids Res (2010) 1.04
Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana. Plant Cell Physiol (2010) 1.03
Sequential binding of SeqA protein to nascent DNA segments at replication forks in synchronized cultures of Escherichia coli. Mol Microbiol (2005) 1.03
Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis. Gene (2002) 1.03
Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Phytochemistry (2007) 1.02
Resistant and susceptible responses in tomato to cyst nematode are differentially regulated by salicylic acid. Plant Cell Physiol (2010) 1.02
Graphene oxide nanosheet with high proton conductivity. J Am Chem Soc (2013) 1.02
Dermokine as a novel biomarker for early-stage colorectal cancer. J Gastroenterol (2010) 1.00
Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data. Curr Comput Aided Drug Des (2010) 1.00
Differences and similarities in the developmental status of embryo-derived stem cells and primordial germ cells revealed by global expression profiling. Genes Cells (2008) 1.00
An mt(+) gamete-specific nuclease that targets mt(-) chloroplasts during sexual reproduction in C. reinhardtii. Genes Dev (2002) 1.00
Breathing chest radiography using a dynamic flat-panel detector combined with computer analysis. Med Phys (2004) 0.98
Risk factors for the incidence and progression of radiographic osteoarthritis of the knee among Japanese. Int Orthop (2010) 0.96
Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress. OMICS (2010) 0.95
GeneLook: a novel ab initio gene identification system suitable for automated annotation of prokaryotic sequences. Gene (2005) 0.95
Clinical phenotype and candidate genes for the 5q31.3 microdeletion syndrome. Am J Med Genet A (2012) 0.95
Arabidopsis KRPs have distinct inhibitory activity toward cyclin D2-associated kinases, including plant-specific B-type cyclin-dependent kinase. FEBS Lett (2005) 0.95
OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling. Biochem Biophys Res Commun (2011) 0.94
Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity. Front Plant Sci (2011) 0.94
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset. BMC Syst Biol (2012) 0.94
Comparative analysis of argK-tox clusters and their flanking regions in phaseolotoxin-producing Pseudomonas syringae pathovars. J Mol Evol (2006) 0.93
The association of microtubules with tight junctions is promoted by cingulin phosphorylation by AMPK. J Cell Biol (2013) 0.93
Changes in mRNA stability associated with cold stress in Arabidopsis cells. Plant Cell Physiol (2012) 0.92
Screening of Indonesian medicinal plant extracts for antibabesial activity and isolation of new quassinoids from Brucea javanica. J Nat Prod (2007) 0.92
Veinal necrosis induced by turnip mosaic virus infection in Arabidopsis is a form of defense response accompanying HR-like cell death. Mol Plant Microbe Interact (2008) 0.92
Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol (2007) 0.91
Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture. Planta (2007) 0.91
Integrative array-based approach identifies MZB1 as a frequently methylated putative tumor suppressor in hepatocellular carcinoma. Clin Cancer Res (2012) 0.91
Hypoxia increases muscle hypertrophy induced by resistance training. Int J Sports Physiol Perform (2010) 0.91
Twinning frequency of Japanese Macaques (Macaca fuscata) at Takasakiyama. Primates (2010) 0.90
Functional recovery of the donor knee after autologous osteochondral transplantation for capitellar osteochondritis dissecans. Am J Sports Med (2010) 0.90
Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. Plant J (2007) 0.90
Evaluation of efficacy of bruceine A, a natural quassinoid compound extracted from a medicinal plant, Brucea javanica, for canine babesiosis. J Vet Med Sci (2009) 0.90
Transcriptional activation of tobacco E2F is repressed by co-transfection with the retinoblastoma-related protein: cyclin D expression overcomes this repressor activity. Plant Mol Biol (2005) 0.90
Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry. Anal Bioanal Chem (2007) 0.90
Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach. OMICS (2010) 0.90
Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS One (2009) 0.89
Arabidopsis RETINOBLASTOMA-RELATED PROTEIN 1 is involved in G1 phase cell cycle arrest caused by sucrose starvation. Plant Mol Biol (2007) 0.89
Accurate extraction of functional associations between proteins based on common interaction partners and common domains. Bioinformatics (2005) 0.89
Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J Mol Biol (2002) 0.89
Lumbar spondylolysis in juveniles from the same family: a report of three cases and a review of the literature. Case Rep Orthop (2013) 0.89
The 5'-untranslated region of the tobacco alcohol dehydrogenase gene functions as an effective translational enhancer in plant. J Biosci Bioeng (2004) 0.88
Three cases of acute or fulminant hepatitis E caused by ingestion of pork meat and entrails in Hokkaido, Japan: Zoonotic food-borne transmission of hepatitis E virus and public health concerns. Hepatol Res (2012) 0.88
A novel bioinformatics strategy for function prediction of poorly-characterized protein genes obtained from metagenome analyses. DNA Res (2009) 0.87
The 5'-untranslated region of the Oryza sativa alcohol dehydrogenase gene functions as a translational enhancer in monocotyledonous plant cells. J Biosci Bioeng (2008) 0.87
Miller syndrome with novel dihydroorotate dehydrogenase gene mutations. Pediatr Int (2011) 0.87
Identification of a beta-glucosidase hydrolyzing tuberonic acid glucoside in rice (Oryza sativa L.). Phytochemistry (2010) 0.86
Germinal center B-cell-associated DNA hypomethylation at transcriptional regions of the AID gene. Mol Immunol (2007) 0.86
Evaluation of pulmonary function using breathing chest radiography with a dynamic flat panel detector: primary results in pulmonary diseases. Invest Radiol (2006) 0.86
Overexpression of NtHAL3 genes confers increased levels of proline biosynthesis and the enhancement of salt tolerance in cultured tobacco cells. J Exp Bot (2004) 0.86