Published in BMC Genomics on April 24, 2010
Comparing de novo assemblers for 454 transcriptome data. BMC Genomics (2010) 3.49
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). BMC Genomics (2010) 3.32
Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics (2011) 2.53
De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). BMC Genomics (2012) 2.11
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics (2011) 2.02
Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae). BMC Genomics (2011) 1.73
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum). BMC Genomics (2011) 1.62
Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery. BMC Genomics (2011) 1.54
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics (2011) 1.43
Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers. BMC Genomics (2012) 1.41
Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation. BMC Plant Biol (2012) 1.41
An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis. BMC Genomics (2011) 1.39
From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol (2011) 1.35
Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA. PLoS One (2012) 1.31
Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nat Commun (2012) 1.30
De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus. BMC Genomics (2012) 1.29
Next-generation sequencing of the Chrysanthemum nankingense (Asteraceae) transcriptome permits large-scale unigene assembly and SSR marker discovery. PLoS One (2013) 1.29
Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer. BMC Genomics (2013) 1.28
De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud). BMC Genomics (2013) 1.26
Exploring the switchgrass transcriptome using second-generation sequencing technology. PLoS One (2012) 1.21
De novo assembly and transcriptome analysis of five major tissues of Jatropha curcas L. using GS FLX titanium platform of 454 pyrosequencing. BMC Genomics (2011) 1.20
De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism. BMC Genomics (2013) 1.19
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. BMC Genomics (2011) 1.16
Comparison of 454-ESTs from Huperzia serrata and Phlegmariurus carinatus reveals putative genes involved in lycopodium alkaloid biosynthesis and developmental regulation. BMC Plant Biol (2010) 1.16
454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng. Plant Cell Rep (2011) 1.14
Triterpenoid biosynthesis and engineering in plants. Front Plant Sci (2011) 1.14
Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing. BMC Genomics (2011) 1.13
De novo assembly, functional annotation and comparative analysis of Withania somnifera leaf and root transcriptomes to identify putative genes involved in the withanolides biosynthesis. PLoS One (2013) 1.11
The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. BMC Genomics (2012) 1.09
Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers. BMC Genomics (2011) 1.09
De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis. BMC Genomics (2012) 1.06
The genome of Ganoderma lucidum provides insights into triterpenes biosynthesis and wood degradation [corrected]. PLoS One (2012) 1.05
De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. BMC Genomics (2013) 1.04
Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep (2012) 1.00
Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe. PLoS One (2013) 0.99
Transcriptome analysis of Bupleurum chinense focusing on genes involved in the biosynthesis of saikosaponins. BMC Genomics (2011) 0.98
Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis. J Biol Chem (2012) 0.98
Global transcriptome sequencing using the Illumina platform and the development of EST-SSR markers in autotetraploid alfalfa. PLoS One (2013) 0.97
High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Mol Genet Genomics (2012) 0.96
Genome-wide transcriptome analysis of Chinese pollination-constant nonastringent persimmon fruit treated with ethanol. BMC Genomics (2014) 0.95
Transcriptome analysis of leaves, roots and flowers of Panax notoginseng identifies genes involved in ginsenoside and alkaloid biosynthesis. BMC Genomics (2015) 0.94
Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots. J Ginseng Res (2014) 0.91
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants. Front Plant Sci (2015) 0.90
The root transcriptome for North American ginseng assembled and profiled across seasonal development. BMC Genomics (2013) 0.88
Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map. BMC Genomics (2014) 0.87
Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome. PLoS One (2013) 0.87
Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome. BMC Genomics (2011) 0.87
De novo transcriptome characterization of Lilium 'Sorbonne' and key enzymes related to the flavonoid biosynthesis. Mol Genet Genomics (2014) 0.85
American ginseng: research developments, opportunities, and challenges. J Ginseng Res (2011) 0.85
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). Heredity (Edinb) (2012) 0.84
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). BMC Genomics (2013) 0.84
De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. PLoS One (2012) 0.84
Transcriptome analysis of Panax vietnamensis var. fuscidicus discovers putative ocotillol-type ginsenosides biosynthesis genes and genetic markers. BMC Genomics (2015) 0.84
Comprehensive analysis of Panax ginseng root transcriptomes. BMC Plant Biol (2015) 0.83
Transcriptome analysis of methyl jasmonate-elicited Panax ginseng adventitious roots to discover putative ginsenoside biosynthesis and transport genes. Int J Mol Sci (2015) 0.83
The effect on the transcriptome of Anemone coronaria following infection with rust (Tranzschelia discolor). PLoS One (2015) 0.83
Transcriptome analysis reveals in vitro cultured Withania somnifera leaf and root tissues as a promising source for targeted withanolide biosynthesis. BMC Genomics (2015) 0.82
Peroxidase gene discovery from the horseradish transcriptome. BMC Genomics (2014) 0.82
UPLC/Q-TOF MS-based metabolomics and qRT-PCR in enzyme gene screening with key role in triterpenoid saponin biosynthesis of Polygala tenuifolia. PLoS One (2014) 0.82
Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies. Comp Funct Genomics (2012) 0.82
Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera. Sci Rep (2015) 0.82
Comparative transcriptome analysis of genes involved in anthocyanin biosynthesis in the red and yellow fruits of sweet cherry (Prunus avium L.). PLoS One (2015) 0.81
Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.). OMICS (2015) 0.81
Mining genes involved in the stratification of Paris polyphylla seeds using high-throughput embryo transcriptome sequencing. BMC Genomics (2013) 0.80
Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms. BMC Bioinformatics (2015) 0.80
Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture. BMC Genomics (2014) 0.79
Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes. BMC Genomics (2016) 0.79
Analysis of Polygala tenuifolia Transcriptome and Description of Secondary Metabolite Biosynthetic Pathways by Illumina Sequencing. Int J Genomics (2015) 0.78
Transcriptomic analysis of Siberian ginseng (Eleutherococcus senticosus) to discover genes involved in saponin biosynthesis. BMC Genomics (2015) 0.78
Transcriptome and proteome profiling of adventitious root development in hybrid larch (Larix kaempferi × Larix olgensis). BMC Plant Biol (2014) 0.77
De novo assembly and transcriptome analysis of two contrary tillering mutants to learn the mechanisms of tillers outgrowth in switchgrass (Panicum virgatum L.). Front Plant Sci (2015) 0.77
Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir. PLoS One (2014) 0.77
Characterization of flower-bud transcriptome and development of genic SSR markers in Asian lotus (Nelumbo nucifera Gaertn.). PLoS One (2014) 0.77
Subtractive transcriptome analysis of leaf and rhizome reveals differentially expressed transcripts in Panax sokpayensis. Funct Integr Genomics (2016) 0.76
Putative genes involved in saikosaponin biosynthesis in Bupleurum species. Int J Mol Sci (2013) 0.76
Abundant and selective RNA-editing events in the medicinal mushroom Ganoderma lucidum. Genetics (2014) 0.76
Time-Course Transcriptome Analysis Reveals Resistance Genes of Panax ginseng Induced by Cylindrocarpon destructans Infection Using RNA-Seq. PLoS One (2016) 0.75
Transcriptome Analysis of Differentially Expressed Genes Involved in Proanthocyanidin Accumulation in the Rhizomes of Fagopyrum dibotrys and an Irradiation-Induced Mutant. Front Physiol (2016) 0.75
Candidate Genes Involved in the Biosynthesis of Triterpenoid Saponins in Platycodon grandiflorum Identified by Transcriptome Analysis. Front Plant Sci (2016) 0.75
Transcriptome Analysis to Identify the Putative Biosynthesis and Transport Genes Associated with the Medicinal Components of Achyranthes bidentata Bl. Front Plant Sci (2016) 0.75
Comparative analysis of the terpenoid biosynthesis pathway in Azadirachta indica and Melia azedarach by RNA-seq. Springerplus (2016) 0.75
Enriching Genomic Resources and Marker Development from Transcript Sequences of Jatropha curcas for Microgravity Studies. Int J Genomics (2017) 0.75
Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq. BMC Genomics (2015) 0.75
Transcriptomic analysis of American ginseng seeds during the dormancy release process by RNA-Seq. PLoS One (2015) 0.75
Transcriptome profiling shows gene regulation patterns in ginsenoside pathway in response to methyl jasmonate in Panax Quinquefolium adventitious root. Sci Rep (2016) 0.75
Transcriptome and metabolite analyses in Azadirachta indica: identification of genes involved in biosynthesis of bioactive triterpenoids. Sci Rep (2017) 0.75
Estrogen alters the profile of the transcriptome in river snail Bellamya aeruginosa. Ecotoxicology (2014) 0.75
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