Published in Amino Acids on June 22, 2010
Proteomic Analysis of Microtubule Interacting Proteins over the Course of Xylem Tracheary Element Formation in Arabidopsis. Plant Cell (2015) 1.03
Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein. BMC Evol Biol (2012) 0.94
Interaction of myelin basic protein with cytoskeletal and signaling proteins in cultured primary oligodendrocytes and N19 oligodendroglial cells. BMC Res Notes (2014) 0.77
The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome. Mol Cell Proteomics (2015) 0.76
Proteomic and Microscopic Strategies towards the Analysis of the Cytoskeletal Networks in Major Neuropsychiatric Disorders. Int J Mol Sci (2016) 0.75
iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics (2008) 5.77
PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods (2011) 5.01
Interferons direct Th2 cell reprogramming to generate a stable GATA-3(+)T-bet(+) cell subset with combined Th2 and Th1 cell functions. Immunity (2010) 2.59
The microRNA miR-182 is induced by IL-2 and promotes clonal expansion of activated helper T lymphocytes. Nat Immunol (2010) 2.53
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. Database (Oxford) (2010) 2.47
S-trityl-L-cysteine is a reversible, tight binding inhibitor of the human kinesin Eg5 that specifically blocks mitotic progression. J Biol Chem (2006) 2.09
Inflammation driven by tumour-specific Th1 cells protects against B-cell cancer. Nat Commun (2011) 1.49
Literature curation of protein interactions: measuring agreement across major public databases. Database (Oxford) (2010) 1.33
Sam50 functions in mitochondrial intermembrane space bridging and biogenesis of respiratory complexes. Mol Cell Biol (2012) 1.22
Extracellular identification of a processed type II ComR/ComS pheromone of Streptococcus mutans. J Bacteriol (2012) 1.21
A global approach combining proteome analysis and phenotypic screening with RNA interference yields novel apoptosis regulators. Mol Cell Proteomics (2004) 1.21
Proteomic identification of secreted proteins from human skeletal muscle cells and expression in response to strength training. Am J Physiol Endocrinol Metab (2011) 1.21
New chemical tools for investigating human mitotic kinesin Eg5. Bioorg Med Chem (2007) 1.12
Isobaric protein and peptide quantification: perspectives and issues. Expert Rev Proteomics (2010) 1.07
MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis. PLoS One (2012) 1.06
The preferred substrates for transglutaminase 2 in a complex wheat gluten digest are Peptide fragments harboring celiac disease T-cell epitopes. PLoS One (2010) 1.05
Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry. Proteomics (2009) 1.04
Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Mol Cell Proteomics (2010) 1.02
Caspase-2 is an initiator caspase responsible for pore-forming toxin-mediated apoptosis. EMBO J (2012) 1.01
CD147 (Basigin/Emmprin) identifies FoxP3+CD45RO+CTLA4+-activated human regulatory T cells. Blood (2011) 1.00
Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates. Mol Cell Proteomics (2010) 1.00
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database. BMC Bioinformatics (2011) 0.99
Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC). Rapid Commun Mass Spectrom (2007) 0.98
Interaction databases on the same page. Nat Biotechnol (2011) 0.98
Identification of surface proteins in Enterococcus faecalis V583. BMC Genomics (2011) 0.97
Molecular dissection of the inhibitor binding pocket of mitotic kinesin Eg5 reveals mutants that confer resistance to antimitotic agents. J Mol Biol (2006) 0.96
Use of hydrogen/deuterium exchange mass spectrometry and mutagenesis as a tool to identify the binding region of inhibitors targeting the human mitotic kinesin Eg5. Rapid Commun Mass Spectrom (2006) 0.93
Proteome analysis of tunicamycin-induced ER stress. Electrophoresis (2012) 0.93
Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches. Proteomics (2006) 0.93
Expansion of multipotent stem cells from the adult human brain. PLoS One (2013) 0.93
Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight. Rapid Commun Mass Spectrom (2006) 0.92
Autophagy Controls Acquisition of Aging Features in Macrophages. J Innate Immun (2015) 0.92
IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT. J Proteome Res (2010) 0.90
Isobaric peptide termini labeling for MS/MS-based quantitative proteomics. J Proteome Res (2009) 0.90
Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS. Electrophoresis (2007) 0.89
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. Nucleic Acids Res (2013) 0.89
Structure of human Eg5 in complex with a new monastrol-based inhibitor bound in the R configuration. J Biol Chem (2007) 0.88
ApoptoProteomics, an integrated database for analysis of proteomics data obtained from apoptotic cells. Mol Cell Proteomics (2011) 0.87
Sorafenib-induced mitochondrial complex I inactivation and cell death in human neuroblastoma cells. J Proteome Res (2012) 0.87
Identification of interaction partners of the cytosolic polyproline region of CD95 ligand (CD178). FEBS Lett (2002) 0.86
Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS. Proteomics (2009) 0.86
Proteome analysis of apoptosis signaling by S-trityl-L-cysteine, a potent reversible inhibitor of human mitotic kinesin Eg5. Proteomics (2008) 0.86
Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome. FEMS Microbiol Lett (2005) 0.86
High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture(SILAC), two-dimensional gel electrophoresis(2DE) and nano-liquid chromatograpohy coupled to an LTQ-OrbitrapMass spectrometer. Mol Cell Proteomics (2012) 0.84
iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex. BMC Bioinformatics (2011) 0.84
Navigating the global protein-protein interaction landscape using iRefWeb. Methods Mol Biol (2014) 0.83
Cloning and biochemical characterization of APIT, a new l-amino acid oxidase from Aplysia punctata. Toxicon (2005) 0.83
The marine natural product adociasulfate-2 as a tool to identify the MT-binding region of kinesins. Biochemistry (2006) 0.83
Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry. J Proteome Res (2010) 0.82
Isobaric peptide termini labeling utilizing site-specific N-terminal succinylation. Anal Chem (2011) 0.82
The proteome of the human parotid gland secretion in elderly with and without root caries. Acta Odontol Scand (2009) 0.82
Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction. BMC Bioinformatics (2012) 0.82
An approach for triplex-isobaric peptide termini labeling (triplex-IPTL). Anal Chem (2013) 0.81
Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species. Mol Cell Proteomics (2010) 0.81
Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells. Proteomics (2010) 0.81
Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis. Electrophoresis (2010) 0.81
Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones. PLoS One (2011) 0.80
Quantitative proteome analysis reveals RNA processing factors as modulators of ionizing radiation-induced apoptosis in the C. elegans germline. J Proteome Res (2012) 0.79
Screening for inhibitors of microtubule-associated motor proteins. Methods Mol Med (2007) 0.79
Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids (2010) 0.78
A rapid approach for isobaric peptide termini labeling. Methods Mol Biol (2012) 0.78
Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Hum Mol Genet (2013) 0.77
STLC-resistant cell lines as tools to classify chemically divergent Eg5 targeting agents according to their mode of action and target specificity. Biochem Pharmacol (2013) 0.77
Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background. J Proteomics (2011) 0.77
The contribution of DNA base damage to human cancer is modulated by the base excision repair interaction network. Crit Rev Oncog (2008) 0.77
Proteomic analysis of 14-3-3 zeta binding proteins in the mouse hippocampus. Int J Physiol Pathophysiol Pharmacol (2012) 0.77
A survey of protein interaction data and multigenic inherited disorders. BMC Bioinformatics (2013) 0.77
Assembling proteomics data as a prerequisite for the analysis of large scale experiments. Chem Cent J (2009) 0.76
Cell death proteomics database: consolidating proteomics data on cell death. J Proteome Res (2013) 0.76
Essential kinesins: characterization of Caenorhabditis elegans KLP-15. Biochemistry (2005) 0.76
Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. J Proteomics (2013) 0.76
Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. Mol Cancer (2014) 0.76
Chasing flies because time flies. J Innate Immun (2014) 0.75
Quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Methods Mol Biol (2011) 0.75
Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Anal Bioanal Chem (2012) 0.75
Polyreactivity of monoclonal antibodies made against human erythrocyte membranes with various pathogenic bacteria. Hybridoma (Larchmt) (2011) 0.75
Corrigendum: Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Res (2017) 0.75