Published in RNA on September 15, 2010
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Mol Cell (2014) 1.32
Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions. J Bacteriol (2011) 1.19
Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA. EMBO J (2015) 1.11
Hfq proximity and orientation controls RNA annealing. Nucleic Acids Res (2012) 1.11
Accessibility and conservation: general features of bacterial small RNA-mRNA interactions? RNA Biol (2012) 1.04
BSRD: a repository for bacterial small regulatory RNA. Nucleic Acids Res (2012) 1.01
Predicting sRNAs and their targets in bacteria. Genomics Proteomics Bioinformatics (2012) 0.98
Small RNA-mediated regulation of host-pathogen interactions. Virulence (2013) 0.96
A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus. Nucleic Acids Res (2014) 0.92
sTarPicker: a method for efficient prediction of bacterial sRNA targets based on a two-step model for hybridization. PLoS One (2011) 0.91
SRD: a Staphylococcus regulatory RNA database. RNA (2015) 0.87
Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria. BMC Genomics (2014) 0.87
Identification and characterization of three Vibrio alginolyticus non-coding RNAs involved in adhesion, chemotaxis, and motility processes. Front Cell Infect Microbiol (2015) 0.85
sRNAdb: a small non-coding RNA database for gram-positive bacteria. BMC Genomics (2012) 0.84
sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria. Nucleic Acids Res (2015) 0.82
SMMRNA: a database of small molecule modulators of RNA. Nucleic Acids Res (2013) 0.82
A comprehensive comparison of general RNA-RNA interaction prediction methods. Nucleic Acids Res (2015) 0.79
Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. Brief Bioinform (2014) 0.79
Genome-Wide Detection of Predicted Non-coding RNAs Related to the Adhesion Process in Vibrio alginolyticus Using High-Throughput Sequencing. Front Microbiol (2016) 0.78
AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure. Bioinformatics (2015) 0.76
A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life. Bioinformatics (2017) 0.75
Mycoplasma non-coding RNA: identification of small RNAs and targets. BMC Genomics (2016) 0.75
Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions. Front Microbiol (2016) 0.75
Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium. RNA Biol (2016) 0.75
Global Screening of Salmonella enterica Serovar Typhimurium Genes for Desiccation Survival. Front Microbiol (2017) 0.75
The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res (2009) 19.70
Vienna RNA secondary structure server. Nucleic Acids Res (2003) 19.69
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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res (2007) 7.64
VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics (2009) 5.66
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci U S A (1998) 4.99
Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol (2005) 4.01
Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB. Mol Microbiol (1998) 3.77
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics (2008) 2.88
Small noncoding RNAs controlling pathogenesis. Curr Opin Microbiol (2007) 2.76
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae. Mol Microbiol (2005) 2.56
Small RNAs controlling iron metabolism. Curr Opin Microbiol (2007) 2.54
Small non-coding RNAs and the bacterial outer membrane. Curr Opin Microbiol (2006) 2.52
MPIDB: the microbial protein interaction database. Bioinformatics (2008) 2.42
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol Microbiol (2006) 2.41
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. Genes Dev (2007) 2.33
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J (1998) 2.26
Target identification of small noncoding RNAs in bacteria. Curr Opin Microbiol (2007) 2.20
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2. Nucleic Acids Res (2006) 2.11
The role of RNAs in the regulation of virulence-gene expression. Curr Opin Microbiol (2006) 2.09
Activation of gene expression by small RNA. Curr Opin Microbiol (2009) 2.04
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol (2007) 2.00
Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol (2009) 1.92
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Mol Microbiol (2008) 1.83
Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS One (2008) 1.80
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol (2009) 1.77
TargetRNA: a tool for predicting targets of small RNA action in bacteria. Nucleic Acids Res (2008) 1.64
Small RNAs controlling outer membrane porins. Curr Opin Microbiol (2007) 1.57
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. EMBO J (2007) 1.55
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J (2009) 1.55
Computational prediction of sRNAs and their targets in bacteria. RNA Biol (2010) 1.49
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Res (2008) 1.26
A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis. J Mol Biol (2007) 1.24
Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. Bioinformatics (2009) 1.17
Small RNA gene identification and mRNA target predictions in bacteria. Bioinformatics (2008) 1.16
sRNATarget: a web server for prediction of bacterial sRNA targets. Bioinformation (2009) 1.06
Construction of two mathematical models for prediction of bacterial sRNA targets. Biochem Biophys Res Commun (2008) 1.05
Identifying Hfq-binding small RNA targets in Escherichia coli. Biochem Biophys Res Commun (2006) 1.00
Kill the messenger: bacterial antisense RNA promotes mRNA decay. Nat Struct Mol Biol (2009) 0.85
Coupling of the nucleus and cytoplasm: role of the LINC complex. J Cell Biol (2005) 6.47
A high-throughput method to monitor the expression of microRNA precursors. Nucleic Acids Res (2004) 5.21
Nesprin 4 is an outer nuclear membrane protein that can induce kinesin-mediated cell polarization. Proc Natl Acad Sci U S A (2009) 2.59
Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain. Science (2010) 2.47
The X-ray structure of a BAK homodimer reveals an inhibitory zinc binding site. Mol Cell (2006) 2.24
Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease. Nat Genet (2012) 2.17
A mixed epigenetic/genetic model for oligogenic inheritance of autism with a limited role for UBE3A. Am J Med Genet A (2004) 1.79
ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis. Plant J (2010) 1.74
A phase 1 clinical trial of long-term, low-dose treatment of WHIM syndrome with the CXCR4 antagonist plerixafor. Blood (2014) 1.66
The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res (2012) 1.66
The CXCR4 antagonist plerixafor corrects panleukopenia in patients with WHIM syndrome. Blood (2011) 1.65
Exogenous silicon (Si) increases antioxidant enzyme activity and reduces lipid peroxidation in roots of salt-stressed barley (Hordeum vulgare L.). J Plant Physiol (2003) 1.53
Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies. Curr Opin Plant Biol (2013) 1.52
Selective tumor hypoxia targeting by hypoxia-activated prodrug TH-302 inhibits tumor growth in preclinical models of cancer. Clin Cancer Res (2011) 1.51
Targeting the multiple myeloma hypoxic niche with TH-302, a hypoxia-activated prodrug. Blood (2010) 1.48
Reverse-phase protein array analysis to identify biomarker proteins in human pancreatic cancer. Dig Dis Sci (2013) 1.43
RTE1 is a Golgi-associated and ETR1-dependent negative regulator of ethylene responses. Plant Physiol (2007) 1.39
Identification of MACC1 as a novel prognostic marker in hepatocellular carcinoma. J Transl Med (2011) 1.38
Suppression of growth, migration and invasion of highly-metastatic human breast cancer cells by berbamine and its molecular mechanisms of action. Mol Cancer (2009) 1.35
Secreted LOXL2 is a novel therapeutic target that promotes gastric cancer metastasis via the Src/FAK pathway. Carcinogenesis (2009) 1.35
Hepatitis B virus X protein modulates oncogene Yes-associated protein by CREB to promote growth of hepatoma cells. Hepatology (2012) 1.34
Receptor signal output mediated by the ETR1 N terminus is primarily subfamily I receptor dependent. Plant Physiol (2006) 1.34
Effects of matrine against the growth of human lung cancer and hepatoma cells as well as lung cancer cell migration. Cytotechnology (2009) 1.34
Health care in China: improvement, challenges, and reform. Chest (2013) 1.31
IL-2 and autocrine IL-4 drive the in vivo development of antigen-specific Th2 T cells elicited by nematode parasites. J Immunol (2005) 1.29
An approach to studying lung cancer-related proteins in human blood. Mol Cell Proteomics (2005) 1.25
Requirements for the development of IL-4-producing T cells during intestinal nematode infections: what it takes to make a Th2 cell in vivo. Immunol Rev (2004) 1.24
Transposons inactivate biosynthesis of the nonribosomal peptide microcystin in naturally occurring Planktothrix spp. Appl Environ Microbiol (2006) 1.24
Tumor cell-microenvironment interaction models coupled with clinical validation reveal CCL2 and SNCG as two predictors of colorectal cancer hepatic metastasis. Clin Cancer Res (2009) 1.24
CADgene: a comprehensive database for coronary artery disease genes. Nucleic Acids Res (2010) 1.23
The ADAM10 prodomain is a specific inhibitor of ADAM10 proteolytic activity and inhibits cellular shedding events. J Biol Chem (2007) 1.22
Hydrophilic Cu9S5 nanocrystals: a photothermal agent with a 25.7% heat conversion efficiency for photothermal ablation of cancer cells in vivo. ACS Nano (2011) 1.21
Matrine suppresses breast cancer cell proliferation and invasion via VEGF-Akt-NF-kappaB signaling. Cytotechnology (2009) 1.21
Higher isolation of NDM-1 producing Acinetobacter baumannii from the sewage of the hospitals in Beijing. PLoS One (2013) 1.20
Upconversion luminescent materials: advances and applications. Chem Rev (2014) 1.19
Negative regulation of miR-145 by C/EBP-β through the Akt pathway in cancer cells. Nucleic Acids Res (2012) 1.19
Laser speckle imaging of blood flow in microcirculation. Phys Med Biol (2004) 1.18
Controllable N-doping of graphene. Nano Lett (2010) 1.18
High-throughput measurement of rice tillers using a conveyor equipped with x-ray computed tomography. Rev Sci Instrum (2011) 1.18
Surface plasmon-coupled emission: what can directional fluorescence bring to the analytical sciences? Annu Rev Anal Chem (Palo Alto Calif) (2012) 1.17
Severe congenital neutropenia resulting from G6PC3 deficiency with increased neutrophil CXCR4 expression and myelokathexis. Blood (2010) 1.17
The role of OX40 ligand interactions in the development of the Th2 response to the gastrointestinal nematode parasite Heligmosomoides polygyrus. J Immunol (2003) 1.17
Epidemiology and clinical presentation of the four human parainfluenza virus types. BMC Infect Dis (2013) 1.16
AMD3100 is a potent antagonist at CXCR4(R334X) , a hyperfunctional mutant chemokine receptor and cause of WHIM syndrome. J Cell Mol Med (2011) 1.14
Differences in the mechanisms of proapoptotic BH3 proteins binding to Bcl-XL and Bcl-2 quantified in live MCF-7 cells. Mol Cell (2012) 1.13
An animal model of SARS produced by infection of Macaca mulatta with SARS coronavirus. J Pathol (2005) 1.12
Metabolic imaging of tumors using intrinsic and extrinsic fluorescent markers. Biosens Bioelectron (2004) 1.10
Identification and verification of microRNA in wheat (Triticum aestivum). J Plant Res (2008) 1.08
Solution structure of the carbon storage regulator protein CsrA from Escherichia coli. J Bacteriol (2005) 1.07
Combinatorial Optimization of (Lu₁₋(x)Gd(x))₃Al₅O₁₂:Ce₃(y) yellow phosphors as precursors for ceramic scintillators. ACS Comb Sci (2010) 1.07
Circulating tumor cells in HER2-positive metastatic breast cancer patients: a valuable prognostic and predictive biomarker. BMC Cancer (2013) 1.06
sRNATarget: a web server for prediction of bacterial sRNA targets. Bioinformation (2009) 1.06
Self-supported nanoporous cobalt phosphide nanowire arrays: an efficient 3D hydrogen-evolving cathode over the wide range of pH 0-14. J Am Chem Soc (2014) 1.06
Antioxidant activity of black currant (Ribes nigrum L.) extract and its inhibitory effect on lipid and protein oxidation of pork patties during chilled storage. Meat Sci (2012) 1.05
Evaluation and application of multiple scoring functions for a virtual screening experiment. J Comput Aided Mol Des (2004) 1.05
Astragaloside IV stimulates angiogenesis and increases hypoxia-inducible factor-1α accumulation via phosphatidylinositol 3-kinase/Akt pathway. J Pharmacol Exp Ther (2011) 1.05
Pain sensitivity and autonomic factors associated with development of TMD: the OPPERA prospective cohort study. J Pain (2013) 1.05
Construction of two mathematical models for prediction of bacterial sRNA targets. Biochem Biophys Res Commun (2008) 1.05
Identifying high-risk areas of bacillary dysentery and associated meteorological factors in Wuhan, China. Sci Rep (2013) 1.05
Autophagic pathways as new targets for cancer drug development. Acta Pharmacol Sin (2010) 1.05
Emergence of a novel Shigella flexneri serotype 4s strain that evolved from a serotype X variant in China. J Clin Microbiol (2010) 1.04
Suppression of growth of highly-metastatic human breast cancer cells by norcantharidin and its mechanisms of action. Cytotechnology (2009) 1.04
Ketamine activates cell cycle signaling and apoptosis in the neonatal rat brain. Anesthesiology (2010) 1.04
miR-20a promotes prostate cancer invasion and migration through targeting ABL2. J Cell Biochem (2014) 1.04
TiO2 nanoparticles promote beta-amyloid fibrillation in vitro. Biochem Biophys Res Commun (2008) 1.03
Inhibitory effects of norcantharidin against human lung cancer cell growth and migration. Cytotechnology (2010) 1.02
Nippostrongylus brasiliensis can induce B7-independent antigen-specific development of IL-4-producing T cells from naive CD4 T cells in vivo. J Immunol (2002) 1.02
Pain modality- and sex-specific effects of COMT genetic functional variants. Pain (2013) 1.02
Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation. BMC Genomics (2013) 1.01
Neutrophils clear bacteria associated with parasitic nematodes augmenting the development of an effective Th2-type response. J Immunol (2008) 1.00
The auxiliary protein complex SaePQ activates the phosphatase activity of sensor kinase SaeS in the SaeRS two-component system of Staphylococcus aureus. Mol Microbiol (2012) 1.00
Emodin-mediated protection from acute myocardial infarction via inhibition of inflammation and apoptosis in local ischemic myocardium. Life Sci (2007) 0.99
Protection from the acquisition of Staphylococcus aureus nasal carriage by cross-reactive antibody to a pneumococcal dehydrogenase. Proc Natl Acad Sci U S A (2012) 0.99
Detection of human bocavirus from children and adults with acute respiratory tract illness in Guangzhou, southern China. BMC Infect Dis (2011) 0.98
Mangiferin attenuates osteoclastogenesis, bone resorption, and RANKL-induced activation of NF-κB and ERK. J Cell Biochem (2011) 0.98
Predicting sRNAs and their targets in bacteria. Genomics Proteomics Bioinformatics (2012) 0.98
Sulforaphane ameliorates the development of experimental autoimmune encephalomyelitis by antagonizing oxidative stress and Th17-related inflammation in mice. Exp Neurol (2013) 0.98
Ruscogenin reduces cerebral ischemic injury via NF-κB-mediated inflammatory pathway in the mouse model of experimental stroke. Eur J Pharmacol (2013) 0.97
An image-based rat model for Monte Carlo organ dose calculations. Med Phys (2008) 0.97
Shedding light on apoptosis at subcellular membranes. Cell (2012) 0.97
Endobronchial ultrasound-guided transbronchial needle aspiration in the mediastinal staging of non-small cell lung cancer: a meta-analysis. Ann Thorac Surg (2013) 0.97
Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects. PLoS Genet (2012) 0.97
Sequestration of copper from beta-amyloid promotes selective lysis by cyclen-hybrid cleavage agents. J Biol Chem (2008) 0.96
Cubic sub-20 nm NaLuF(4)-based upconversion nanophosphors for high-contrast bioimaging in different animal species. Biomaterials (2012) 0.96
An ethnopharmacological study of medicinal plants in New South Wales. Molecules (2005) 0.96
Suppression of human lung cancer cell growth and migration by berbamine. Cytotechnology (2009) 0.96
A cyanine-modified nanosystem for in vivo upconversion luminescence bioimaging of methylmercury. J Am Chem Soc (2013) 0.96
The astrocyte-expressed integrin αvβ8 governs blood vessel sprouting in the developing retina. Development (2011) 0.95
(R)-Methanandamide and delta9-tetrahydrocannabinol-induced operant rate decreases in rats are not readily antagonized by SR-141716A. Eur J Pharmacol (2003) 0.95
Surface plasmon-coupled directional emission based on a conformational-switching signaling aptamer. Chem Commun (Camb) (2009) 0.94
Protective effect of melatonin on bone marrow mesenchymal stem cells against hydrogen peroxide-induced apoptosis in vitro. J Cell Biochem (2013) 0.94
[Analysis of myocardial proteomic alteration after Qishenyiqi formula treatment in acute infarcted rat hearts]. Zhongguo Zhong Yao Za Zhi (2009) 0.94
The synergy in cytokine production through MyD88-TRIF pathways is co-ordinated with ERK phosphorylation in macrophages. Immunol Cell Biol (2013) 0.94