Published in ISME J on October 21, 2010
Genomic sequencing of uncultured microorganisms from single cells. Nat Rev Microbiol (2012) 2.45
New abundant microbial groups in aquatic hypersaline environments. Sci Rep (2011) 1.84
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J (2011) 1.55
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PLoS One (2012) 1.44
Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions. Front Microbiol (2011) 1.21
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME J (2012) 1.21
Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J (2011) 1.09
454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One (2013) 1.05
Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. ISME J (2013) 0.99
Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling. PLoS One (2012) 0.98
Single cell genome sequencing. Curr Opin Biotechnol (2011) 0.97
Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'. PLoS One (2013) 0.97
Cell sorting analysis of geographically separated hypersaline environments. Extremophiles (2013) 0.92
Unveiling trophic functions of uncultured protist taxa by incubation experiments in the brackish Baltic Sea. PLoS One (2012) 0.91
Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Sci Rep (2012) 0.86
Taming the smallest predators of the oceans. ISME J (2012) 0.86
Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction. Appl Environ Microbiol (2012) 0.85
Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations. Nucleic Acids Res (2015) 0.83
Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake. Appl Environ Microbiol (2016) 0.79
Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers? ISME J (2016) 0.77
Survey of the green picoalga Bathycoccus genomes in the global ocean. Sci Rep (2016) 0.76
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep (2017) 0.75
A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus. Front Microbiol (2016) 0.75
Ecological and evolutionary significance of novel protist lineages. Eur J Protistol (2016) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol (2005) 49.76
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol (1990) 28.74
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics (2006) 25.13
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol (1988) 21.38
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol (1996) 20.84
Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res (2008) 19.09
The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene (1988) 18.61
Differential amplification of rRNA genes by polymerase chain reaction. Appl Environ Microbiol (1992) 14.96
Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A (2002) 13.58
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
Sequencing genomes from single cells by polymerase cloning. Nat Biotechnol (2006) 7.64
Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature (2001) 5.25
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics (2006) 4.55
Genomic DNA amplification from a single bacterium. Appl Environ Microbiol (2005) 4.25
Assembling the marine metagenome, one cell at a time. PLoS One (2009) 4.10
The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Mol Biol Evol (1985) 3.95
Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Appl Environ Microbiol (2001) 3.47
Do bacteria-sized marine eukaryotes consume significant bacterial production? Science (1984) 3.25
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol (2004) 2.88
Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes. Science (2007) 2.54
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc Natl Acad Sci U S A (2007) 2.52
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS One (2009) 2.51
Structural diversity of eukaryotic small subunit ribosomal RNAs. Evolutionary implications. Ann N Y Acad Sci (1987) 2.36
Phylogenetic and ecological analysis of novel marine stramenopiles. Appl Environ Microbiol (2004) 2.35
The correlation between rDNA copy number and genome size in eukaryotes. Genome (2003) 2.26
High bacterivory by the smallest phytoplankton in the North Atlantic Ocean. Nature (2008) 2.15
Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. Environ Microbiol (2007) 1.77
New insights into the diversity of marine picoeukaryotes. PLoS One (2009) 1.75
Microbial community structure in the North Pacific ocean. ISME J (2009) 1.64
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist (2006) 1.63
Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiol Ecol (2004) 1.56
Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway). Appl Environ Microbiol (2006) 1.45
Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream). Environ Microbiol (2007) 1.30
Widespread distribution of a unique marine protistan lineage. Environ Microbiol (2008) 1.24
Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry. Appl Environ Microbiol (2003) 1.23
Telonemia, a new protist phylum with affinity to chromist lineages. Proc Biol Sci (2006) 1.21
PCR-based diversity estimates of artificial and environmental 18S rRNA gene libraries. J Eukaryot Microbiol (2011) 1.08
Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera comb.nov. Protist (1999) 0.99
Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia. Protist (2006) 0.98
Species of the parasitic genus Duboscquella are members of the enigmatic Marine Alveolate Group I. Protist (2007) 0.94
Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments. Appl Environ Microbiol (2005) 0.92
Feeding and grazing impact by small marine heterotrophic dinoflagellates on heterotrophic bacteria. J Eukaryot Microbiol (2008) 0.89
Reverse evolution: driving forces behind the loss of acquired photosynthetic traits. PLoS One (2009) 0.84
Effects of viruses and predators on prokaryotic community composition. Microb Ecol (2005) 0.81
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J Comput Biol (2013) 6.90
Assembling the marine metagenome, one cell at a time. PLoS One (2009) 4.10
Genomic sequencing of single microbial cells from environmental samples. Curr Opin Microbiol (2008) 3.99
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science (2011) 3.12
Co-selection of antibiotic and metal resistance. Trends Microbiol (2006) 2.81
A holistic approach to marine eco-systems biology. PLoS Biol (2011) 2.71
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science (2014) 2.58
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc Natl Acad Sci U S A (2007) 2.52
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci U S A (2013) 2.27
Decontamination of MDA reagents for single cell whole genome amplification. PLoS One (2011) 1.91
Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science (2011) 1.90
New abundant microbial groups in aquatic hypersaline environments. Sci Rep (2011) 1.84
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J (2011) 1.55
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J Bacteriol (2008) 1.49
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PLoS One (2012) 1.44
Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl Environ Microbiol (2005) 1.42
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME J (2012) 1.21
What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One (2011) 1.20
Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities. ISME J (2008) 1.15
Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J (2011) 1.09
Multi-site analysis reveals widespread antibiotic resistance in the marine pathogen Vibrio vulnificus. Microb Ecol (2008) 1.01
Antibiotic resistance in the shellfish pathogen Vibrio parahaemolyticus isolated from the coastal water and sediment of Georgia and South Carolina, USA. J Food Prot (2008) 1.00
Bacterial tolerances to metals and antibiotics in metal-contaminated and reference streams. FEMS Microbiol Ecol (2006) 0.99
Flow-cytometric cell sorting and subsequent molecular analyses for culture-independent identification of bacterioplankton involved in dimethylsulfoniopropionate transformations. Appl Environ Microbiol (2005) 0.97
Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environ Microbiol (2013) 0.95
Cell sorting analysis of geographically separated hypersaline environments. Extremophiles (2013) 0.92
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade. Genome Biol (2013) 0.87
Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Sci Rep (2012) 0.86
Taming the smallest predators of the oceans. ISME J (2012) 0.86
Planktonic microbes in the Gulf of Maine area. PLoS One (2011) 0.85
Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. Microbiology (2013) 0.82
Comparing effective population sizes of dominant marine alphaproteobacteria lineages. Environ Microbiol Rep (2013) 0.81
Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi. PLoS One (2011) 0.81