Published in Mol Biol Evol on March 01, 1990
A new statistical method for haplotype reconstruction from population data. Am J Hum Genet (2001) 59.30
A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet (2003) 26.59
Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am J Hum Genet (2001) 22.07
Genotype imputation. Annu Rev Genomics Hum Genet (2009) 18.64
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics (2003) 17.73
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet (2005) 14.09
An E-M algorithm and testing strategy for multiple-locus haplotypes. Am J Hum Genet (1995) 13.84
A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet (2006) 12.45
Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am J Hum Genet (2000) 11.47
Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet (2001) 10.48
Complex promoter and coding region beta 2-adrenergic receptor haplotypes alter receptor expression and predict in vivo responsiveness. Proc Natl Acad Sci U S A (2000) 10.27
Haplotype inference in random population samples. Am J Hum Genet (2002) 8.07
Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase. Am J Hum Genet (1998) 7.56
Linkage disequilibrium--understanding the evolutionary past and mapping the medical future. Nat Rev Genet (2008) 7.08
Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet (2006) 5.92
Haplotype phasing: existing methods and new developments. Nat Rev Genet (2011) 4.66
Gametic phase estimation over large genomic regions using an adaptive window approach. Hum Genomics (2003) 4.63
Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. Am J Hum Genet (2000) 4.39
GERBIL: Genotype resolution and block identification using likelihood. Proc Natl Acad Sci U S A (2004) 4.36
Comparison of the accuracy of methods of computational haplotype inference using a large empirical dataset. BMC Genet (2004) 3.15
A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data. Genetics (1990) 3.07
Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proc Natl Acad Sci U S A (1999) 2.89
Haplotype block structure and its applications to association studies: power and study designs. Am J Hum Genet (2002) 2.88
Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res (2004) 2.85
Recombinational and mutational hotspots within the human lipoprotein lipase gene. Am J Hum Genet (2000) 2.83
Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism. Am J Hum Genet (2000) 2.62
An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Res (2008) 2.45
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res (2007) 2.37
Localization of a small genomic region associated with elevated ACE. Am J Hum Genet (2000) 2.13
HaploRec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics (2006) 2.08
Unraveling selection in the mitochondrial genome of Drosophila. Genetics (1994) 2.08
Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genet Epidemiol (2007) 1.87
A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Hum Genomics (2005) 1.84
Evidence for positive selection and population structure at the human MAO-A gene. Proc Natl Acad Sci U S A (2002) 1.79
Direct molecular haplotyping of long-range genomic DNA with M1-PCR. Proc Natl Acad Sci U S A (2003) 1.74
Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res (2004) 1.74
Hybrid Tamarix widespread in U.S. invasion and undetected in native Asian range. Proc Natl Acad Sci U S A (2002) 1.71
High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence. Am J Hum Genet (2001) 1.69
Haplotype and missing data inference in nuclear families. Genome Res (2004) 1.69
Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. Am J Hum Genet (2004) 1.66
Cladistic structure within the human Lipoprotein lipase gene and its implications for phenotypic association studies. Genetics (2000) 1.64
Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics (2005) 1.64
Transmission/disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes. Am J Hum Genet (2001) 1.62
HapScope: a software system for automated and visual analysis of functionally annotated haplotypes. Nucleic Acids Res (2002) 1.60
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
Nucleotide polymorphism in the Adh1 locus of pearl millet (Pennisetum glaucum) (Poaceae). Genetics (1993) 1.47
Autosomal, mtDNA, and Y-chromosome diversity in Amerinds: pre- and post-Columbian patterns of gene flow in South America. Am J Hum Genet (2000) 1.45
Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data. Am J Hum Genet (2003) 1.42
Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data. Genetics (2009) 1.42
Species and recombination effects on DNA variability in the tomato genus. Genetics (2001) 1.39
Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA. Proc Natl Acad Sci U S A (2003) 1.27
Statistical resolution of ambiguous HLA typing data. PLoS Comput Biol (2008) 1.25
Theoretical underpinning of the single-molecule-dilution (SMD) method of direct haplotype resolution. Am J Hum Genet (1990) 1.25
SNPAnalyzer: a web-based integrated workbench for single-nucleotide polymorphism analysis. Nucleic Acids Res (2005) 1.23
Direct haplotype determination by double ARMS: specificity, sensitivity and genetic applications. Nucleic Acids Res (1991) 1.22
Intra- and interpopulation genotype reconstruction from tagging SNPs. Genome Res (2006) 1.21
Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms. Genome Res (2003) 1.21
Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity. J Virol (2011) 1.19
An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies. Proc Natl Acad Sci U S A (2007) 1.18
Shape-IT: new rapid and accurate algorithm for haplotype inference. BMC Bioinformatics (2008) 1.17
Nuclear gene genealogies reveal historical, demographic and selective factors associated with speciation in field crickets. Genetics (2003) 1.09
Are molecular haplotypes worth the time and expense? A cost-effective method for applying molecular haplotypes. PLoS Genet (2006) 1.09
Linkage disequilibrium between loci with unknown phase. Genetics (2009) 1.07
The molecular basis of host adaptation in cactophilic Drosophila: molecular evolution of a glutathione S-transferase gene (GstD1) in Drosophila mojavensis. Genetics (2008) 1.06
A survey on haplotyping algorithms for tightly linked markers. J Bioinform Comput Biol (2008) 1.06
An association analysis of Alzheimer disease candidate genes detects an ancestral risk haplotype clade in ACE and putative multilocus association between ACE, A2M, and LRRTM3. Am J Med Genet B Neuropsychiatr Genet (2009) 1.05
Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain. Proc Natl Acad Sci U S A (2003) 1.04
Haplotype-based profiling of subtle allelic imbalance with SNP arrays. Genome Res (2012) 1.03
Sequence variation in PPARG may underlie differential response to troglitazone. Diabetes (2005) 1.01
MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Res (2000) 0.99
A coalescence-guided hierarchical Bayesian method for haplotype inference. Am J Hum Genet (2006) 0.98
Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers. Genetics (2003) 0.97
Sequence variation at two eosinophil-associated ribonuclease loci in humans. Genetics (2000) 0.96
Efficient inference of haplotypes from genotypes on a large animal pedigree. Genetics (2005) 0.96
LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. PLoS One (2012) 0.95
Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon). Genetics (2008) 0.95
A survey of current software for haplotype phase inference. Hum Genomics (2004) 0.94
Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations. BMC Evol Biol (2013) 0.94
The effect of recent admixture on inference of ancient human population history. Genetics (2010) 0.93
Inferring haplotypes at the NAT2 locus: the computational approach. BMC Genet (2005) 0.93
Analysis and exploration of the use of rule-based algorithms and consensus methods for the inferral of haplotypes. Genetics (2003) 0.93
A sparse marker extension tree algorithm for selecting the best set of haplotype tagging single nucleotide polymorphisms. Genet Epidemiol (2005) 0.93
Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives. PLoS One (2012) 0.93
Simultaneous estimation of haplotype frequencies and quantitative trait parameters: applications to the test of association between phenotype and diplotype configuration. Genetics (2004) 0.92
Historical spatial range expansion and a very recent bottleneck of Cinnamomum kanehirae Hay. (Lauraceae) in Taiwan inferred from nuclear genes. BMC Evol Biol (2010) 0.91
Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy. BMC Evol Biol (2010) 0.91
Incorporating experimental design and error into coalescent/mutation models of population history. Genetics (2007) 0.91
Whole-genome haplotyping approaches and genomic medicine. Genome Med (2014) 0.90
Population genetics of the developmental gene optomotor-blind (omb) in Drosophila polymorpha: evidence for a role in abdominal pigmentation variation. Genetics (2004) 0.90
A strong 'filter' effect of the East China Sea land bridge for East Asia's temperate plant species: inferences from molecular phylogeography and ecological niche modelling of Platycrater arguta (Hydrangeaceae). BMC Evol Biol (2014) 0.90
Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): founder effects, vicariance, or both? BMC Evol Biol (2008) 0.89
Polymorphism, recombination and alternative unscrambling in the DNA polymerase alpha gene of the ciliate Stylonychia lemnae (Alveolata; class Spirotrichea). Genetics (2003) 0.87
Development and application of three-tiered nuclear genetic markers for basal Hexapods using single-stranded conformation polymorphism coupled with targeted DNA sequencing. BMC Genet (2006) 0.86
Haplotype inference based on Hidden Markov Models in the QTL-MAS 2010 multi-generational dataset. BMC Proc (2011) 0.86
Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages. BMC Genet (2005) 0.85
Tracking the evolutionary history of Cortinarius species in section Calochroi, with transoceanic disjunct distributions. BMC Evol Biol (2011) 0.85
MixSIH: a mixture model for single individual haplotyping. BMC Genomics (2013) 0.85
Sex-linked inheritance in macaque monkeys: implications for effective population size and dispersal to Sulawesi. Genetics (2010) 0.84
Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster. Genetics (1995) 4.51
Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster. Genetics (1988) 1.59
Variation among extracted lines of Drosophila melanogaster in triacylglycerol and carbohydrate storage. Genetics (1988) 1.45
Prospects for estimating nucleotide divergence with RAPDs. Mol Biol Evol (1993) 1.44
Mutation-selection balance and metabolic control theory. Genetics (1991) 1.16
Two tests of Y chromosomal variation in male fertility of Drosophila melanogaster. Genetics (1990) 1.06
Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions. Proc Natl Acad Sci U S A (1994) 0.91
Neutrality tests of highly polymorphic restriction-fragment-length polymorphisms. Am J Hum Genet (1987) 0.91
P-element-induced variation in metabolic regulation in Drosophila. Genetics (1995) 0.89
The evolution of the Y chromosome with X-Y recombination. Genetics (1988) 0.85
Direct and correlated responses to artificial selection on lipid and glycogen contents in Drosophila melanogaster. Genet Res (1990) 0.75