Published in Nat Genet on January 09, 2011
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One (2014) 3.45
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat Genet (2012) 3.03
Crop genomics: advances and applications. Nat Rev Genet (2011) 2.72
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nat Genet (2012) 2.69
Genome-wide genetic changes during modern breeding of maize. Nat Genet (2012) 2.60
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proc Natl Acad Sci U S A (2011) 2.38
Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat Genet (2012) 2.25
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol (2011) 2.20
The advantages and limitations of trait analysis with GWAS: a review. Plant Methods (2013) 2.08
Associative transcriptomics of traits in the polyploid crop species Brassica napus. Nat Biotechnol (2012) 1.96
Genome-wide association studies in plants: the missing heritability is in the field. Genome Biol (2011) 1.93
Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genet (2011) 1.88
Potential for evolutionary responses to climate change - evidence from tree populations. Glob Chang Biol (2013) 1.84
Historical genomics of North American maize. Proc Natl Acad Sci U S A (2012) 1.79
NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics (2012) 1.76
Genome-wide association mapping identifies a new arsenate reductase enzyme critical for limiting arsenic accumulation in plants. PLoS Biol (2014) 1.74
A genome-wide association study of seed protein and oil content in soybean. BMC Genomics (2014) 1.73
High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res (2012) 1.66
Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing. PLoS One (2012) 1.57
Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies. PLoS Genet (2016) 1.53
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
SNP Discovery through Next-Generation Sequencing and Its Applications. Int J Plant Genomics (2012) 1.46
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proc Natl Acad Sci U S A (2011) 1.46
Harvesting the promising fruits of genomics: applying genome sequencing technologies to crop breeding. PLoS Biol (2014) 1.42
Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser. PLoS One (2014) 1.42
A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. Plant Cell (2013) 1.41
The genetic architecture of maize height. Genetics (2014) 1.41
Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.). DNA Res (2014) 1.34
Next-generation hybridization and introgression. Heredity (Edinb) (2011) 1.32
SNP markers and their impact on plant breeding. Int J Plant Genomics (2012) 1.32
Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genet (2013) 1.30
Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol (2011) 1.28
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26
Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean. BMC Genomics (2014) 1.26
Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping. Plant Physiol (2014) 1.26
Genotyping-by-Sequencing in Plants. Biology (Basel) (2012) 1.25
Can genomics boost productivity of orphan crops? Nat Biotechnol (2012) 1.24
An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F₂ maize population. BMC Genomics (2014) 1.22
Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. PLoS Genet (2014) 1.19
A modern ampelography: a genetic basis for leaf shape and venation patterning in grape. Plant Physiol (2013) 1.19
B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol (2011) 1.18
Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. PLoS Genet (2012) 1.16
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database (Oxford) (2011) 1.16
The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population. Heredity (Edinb) (2011) 1.16
Modelling the genetic architecture of flowering time control in barley through nested association mapping. BMC Genomics (2015) 1.14
Entering the second century of maize quantitative genetics. Heredity (Edinb) (2013) 1.09
Association mapping across numerous traits reveals patterns of functional variation in maize. PLoS Genet (2014) 1.08
The developmental trajectory of leaflet morphology in wild tomato species. Plant Physiol (2012) 1.08
Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm. BMC Genomics (2015) 1.07
Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred lines. PLoS One (2011) 1.06
Warped linear mixed models for the genetic analysis of transformed phenotypes. Nat Commun (2014) 1.06
Genomic toolboxes for conservation biologists. Evol Appl (2011) 1.06
The genetic architecture of maize stalk strength. PLoS One (2013) 1.03
Genome-wide SNP discovery from transcriptome of four common carp strains. PLoS One (2012) 1.02
Modeling Epistasis in Genomic Selection. Genetics (2015) 1.01
Prediction of genetic values of quantitative traits with epistatic effects in plant breeding populations. Heredity (Edinb) (2012) 1.00
Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theor Appl Genet (2014) 0.98
Unlocking Triticeae genomics to sustainably feed the future. Plant Cell Physiol (2013) 0.98
Modern maize varieties going local in the semi-arid zone in Tanzania. BMC Evol Biol (2014) 0.98
AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species. Nucleic Acids Res (2014) 0.98
Genome-Wide Linkage Mapping of QTL for Yield Components, Plant Height and Yield-Related Physiological Traits in the Chinese Wheat Cross Zhou 8425B/Chinese Spring. Front Plant Sci (2015) 0.97
Regulatory modules controlling maize inflorescence architecture. Genome Res (2013) 0.97
Identification of candidate genes for drought tolerance by whole-genome resequencing in maize. BMC Plant Biol (2014) 0.97
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels. BMC Genet (2013) 0.96
Association of candidate genes with drought tolerance traits in diverse perennial ryegrass accessions. J Exp Bot (2013) 0.95
Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits. Biotechnol Biofuels (2012) 0.94
Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population. Heredity (Edinb) (2015) 0.93
Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. Genetics (2014) 0.93
QTL mapping of leafy heads by genome resequencing in the RIL population of Brassica rapa. PLoS One (2013) 0.93
Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel. BMC Plant Biol (2015) 0.92
Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. Plant Cell (2014) 0.92
Flowering time in maize: linkage and epistasis at a major effect locus. Genetics (2012) 0.92
High-resolution genetic mapping of maize pan-genome sequence anchors. Nat Commun (2015) 0.92
Accuracy of across-environment genome-wide prediction in maize nested association mapping populations. G3 (Bethesda) (2013) 0.91
Insights into the effects of long-term artificial selection on seed size in maize. Genetics (2014) 0.91
Strategies for transferring resistance into wheat: from wide crosses to GM cassettes. Front Plant Sci (2014) 0.90
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population. Genome Biol (2015) 0.89
Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population. Plant Physiol (2014) 0.89
Latent developmental and evolutionary shapes embedded within the grapevine leaf. New Phytol (2015) 0.89
Integration of Experiments across Diverse Environments Identifies the Genetic Determinants of Variation in Sorghum bicolor Seed Element Composition. Plant Physiol (2016) 0.88
Genetic control of the leaf angle and leaf orientation value as revealed by ultra-high density maps in three connected maize populations. PLoS One (2015) 0.88
RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera). PLoS One (2015) 0.88
Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping. BMC Genomics (2015) 0.88
Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.). Sci Rep (2015) 0.88
Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis. PLoS Genet (2015) 0.87
Genome-wide association study of rice (Oryza sativa L.) leaf traits with a high-throughput leaf scorer. J Exp Bot (2015) 0.87
Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication. Proc Natl Acad Sci U S A (2014) 0.87
Emerging paradigms in genomics-based crop improvement. ScientificWorldJournal (2013) 0.86
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One (2012) 0.86
The tomato genome: implications for plant breeding, genomics and evolution. Genome Biol (2012) 0.85
Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families. G3 (Bethesda) (2014) 0.85
Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus. BMC Genomics (2013) 0.85
Genetic characteristics of soybean resistance to HG type 0 and HG type 1.2.3.5.7 of the cyst nematode analyzed by genome-wide association mapping. BMC Genomics (2015) 0.85
Collinearity analysis of Brassica A and C genomes based on an updated inferred unigene order. Data Brief (2015) 0.84
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
Rare variants create synthetic genome-wide associations. PLoS Biol (2010) 14.43
Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat Genet (2006) 9.87
The genetic architecture of maize flowering time. Science (2009) 9.27
Genetic properties of the maize nested association mapping population. Science (2009) 7.78
Common vs. rare allele hypotheses for complex diseases. Curr Opin Genet Dev (2009) 6.85
A first-generation haplotype map of maize. Science (2009) 6.82
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum Mol Genet (2003) 6.82
Naturally occurring genetic variation in Arabidopsis thaliana. Annu Rev Plant Biol (2004) 5.52
Genetic architecture of quantitative traits in mice, flies, and humans. Genome Res (2009) 4.62
Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J (2005) 4.59
The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science (2005) 4.31
Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population. Plant Mol Biol (2002) 4.28
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat Genet (2006) 3.97
Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize. Proc Natl Acad Sci U S A (2007) 3.63
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res (2010) 2.71
The genetic architecture of response to long-term artificial selection for oil concentration in the maize kernel. Genetics (2004) 2.45
Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. Plant Cell (2003) 2.43
Mapping in structured populations by resample model averaging. Genetics (2009) 2.30
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice. Proc Natl Acad Sci U S A (2009) 1.89
liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis. Genes Dev (1997) 1.85
High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues. Genome Res (2009) 1.83
A maize Myb homolog is encoded by a multicopy gene complex. Mol Gen Genet (1998) 1.49
The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary. Genes Dev (1998) 1.34
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet (2005) 20.97
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet (2010) 16.96
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics (2007) 14.95
Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nat Genet (2012) 11.09
The genetic architecture of maize flowering time. Science (2009) 9.27
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
Mixed linear model approach adapted for genome-wide association studies. Nat Genet (2010) 8.47
Genetic properties of the maize nested association mapping population. Science (2009) 7.78
A first-generation haplotype map of maize. Science (2009) 6.82
The effects of artificial selection on the maize genome. Science (2005) 6.20
Structure of linkage disequilibrium in plants. Annu Rev Plant Biol (2003) 5.87
Secreted monocytic miR-150 enhances targeted endothelial cell migration. Mol Cell (2010) 5.77
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One (2012) 5.64
Genetic design and statistical power of nested association mapping in maize. Genetics (2008) 4.92
Meta-analysis of prospective cohort studies evaluating the association of saturated fat with cardiovascular disease. Am J Clin Nutr (2010) 4.85
Depression and risk of stroke morbidity and mortality: a meta-analysis and systematic review. JAMA (2011) 4.75
Red meat consumption and mortality: results from 2 prospective cohort studies. Arch Intern Med (2012) 4.72
Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell (2009) 4.59
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res (2007) 4.59
Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J (2005) 4.59
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. Nat Genet (2014) 4.13
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS One (2008) 4.03
The developmental dynamics of the maize leaf transcriptome. Nat Genet (2010) 4.02
Rotating night shift work and risk of type 2 diabetes: two prospective cohort studies in women. PLoS Med (2011) 3.88
White rice consumption and risk of type 2 diabetes: meta-analysis and systematic review. BMJ (2012) 3.82
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Bidirectional association between depression and type 2 diabetes mellitus in women. Arch Intern Med (2010) 3.66
GAPIT: genome association and prediction integrated tool. Bioinformatics (2012) 3.66
Major dietary protein sources and risk of coronary heart disease in women. Circulation (2010) 3.65
Bidirectional association between depression and metabolic syndrome: a systematic review and meta-analysis of epidemiological studies. Diabetes Care (2012) 3.53
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS One (2008) 3.41
Genetic association mapping and genome organization of maize. Curr Opin Biotechnol (2006) 3.34
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Red meat consumption and risk of type 2 diabetes: 3 cohorts of US adults and an updated meta-analysis. Am J Clin Nutr (2011) 3.27
Genetic variants at 2q24 are associated with susceptibility to type 2 diabetes. Hum Mol Genet (2010) 3.24
Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. PLoS Genet (2012) 3.21
Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A (2002) 3.20
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS One (2009) 3.17
Changes in red meat consumption and subsequent risk of type 2 diabetes mellitus: three cohorts of US men and women. JAMA Intern Med (2013) 3.06
Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science (2008) 3.06
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci U S A (2013) 2.88
Development and mapping of SSR markers for maize. Plant Mol Biol (2002) 2.83
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genet (2013) 2.83
Crop genomics: advances and applications. Nat Rev Genet (2011) 2.72
Pore-forming activity and structural autoinhibition of the gasdermin family. Nature (2016) 2.71
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell (2005) 2.50
Depression and incident stroke in women. Stroke (2011) 2.47
Saturated fat, carbohydrate, and cardiovascular disease. Am J Clin Nutr (2010) 2.46
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
The genetic architecture of response to long-term artificial selection for oil concentration in the maize kernel. Genetics (2004) 2.45
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proc Natl Acad Sci U S A (2011) 2.38
In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell (2004) 2.33
Genetic diversity and population structure of teosinte. Genetics (2005) 2.31
Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell (2004) 2.27
Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain. Nat Genet (2010) 2.25
A genome-wide characterization of microRNA genes in maize. PLoS Genet (2009) 2.23
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol (2011) 2.20