Published in Bioinformatics on January 19, 2011
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res (2014) 3.57
ggbio: an R package for extending the grammar of graphics for genomic data. Genome Biol (2012) 2.51
The UCSC Genome Browser database: 2016 update. Nucleic Acids Res (2015) 2.18
Visualizing next-generation sequencing data with JBrowse. Brief Bioinform (2012) 1.70
GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update. Nucleic Acids Res (2012) 1.63
Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web. Bioinformatics (2012) 1.49
The Ensembl REST API: Ensembl Data for Any Language. Bioinformatics (2014) 1.43
Genome Maps, a new generation genome browser. Nucleic Acids Res (2013) 1.33
Developing and implementing an institute-wide data sharing policy. Genome Med (2011) 1.32
JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol (2016) 1.09
An interactive genome browser of association results from the UK10K cohorts project. Bioinformatics (2015) 0.96
myKaryoView: a light-weight client for visualization of genomic data. PLoS One (2011) 0.94
Creating reference gene annotation for the mouse C57BL6/J genome assembly. Mamm Genome (2015) 0.91
The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes. Mamm Genome (2015) 0.89
Teaching the fundamentals of biological data integration using classroom games. PLoS Comput Biol (2012) 0.87
Drift and conservation of differential exon usage across tissues in primate species. Proc Natl Acad Sci U S A (2013) 0.87
A comparison of peak callers used for DNase-Seq data. PLoS One (2014) 0.87
The personal genome browser: visualizing functions of genetic variants. Nucleic Acids Res (2014) 0.81
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. Bioinformatics (2016) 0.79
CauloBrowser: A systems biology resource for Caulobacter crescentus. Nucleic Acids Res (2015) 0.79
TnT: a set of libraries for visualizing trees and track-based annotations for the web. Bioinformatics (2016) 0.78
pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data. Bioinformatics (2016) 0.76
TEA: the epigenome platform for Arabidopsis methylome study. BMC Genomics (2016) 0.75
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data (2016) 0.75
MyDas, an extensible Java DAS server. PLoS One (2012) 0.75
GTB - an online genome tolerance browser. BMC Bioinformatics (2017) 0.75
PBrowse: a web-based platform for real-time collaborative exploration of genomic data. Nucleic Acids Res (2017) 0.75
The Sequence Alignment/Map format and SAMtools. Bioinformatics (2009) 232.39
Integrative genomics viewer. Nat Biotechnol (2011) 42.83
The generic genome browser: a building block for a model organism system database. Genome Res (2002) 42.64
Ensembl 2009. Nucleic Acids Res (2008) 25.38
The UCSC Genome Browser database: update 2010. Nucleic Acids Res (2009) 16.58
Apollo: a sequence annotation editor. Genome Biol (2002) 10.77
BigWig and BigBed: enabling browsing of large distributed datasets. Bioinformatics (2010) 9.11
JBrowse: a next-generation genome browser. Genome Res (2009) 6.77
Integrating biological data--the Distributed Annotation System. BMC Bioinformatics (2008) 6.56
The otter annotation system. Genome Res (2004) 3.88
X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis. Nucleic Acids Res (2007) 2.69
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol (2008) 21.72
SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Res (2002) 18.11
SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res (2004) 15.21
Ensembl 2011. Nucleic Acids Res (2010) 14.68
Ensembl 2012. Nucleic Acids Res (2011) 14.55
Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res (2007) 13.44
Ensembl 2014. Nucleic Acids Res (2013) 12.62
Ensembl 2013. Nucleic Acids Res (2012) 11.70
Ensembl's 10th year. Nucleic Acids Res (2009) 10.82
The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res (2002) 7.89
Integrating biological data--the Distributed Annotation System. BMC Bioinformatics (2008) 6.56
Integrating sequence and structural biology with DAS. BMC Bioinformatics (2007) 5.12
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Res (2008) 4.84
MaxBench: evaluation of sequence and structure comparison methods. Bioinformatics (2002) 4.83
Adding some SPICE to DAS. Bioinformatics (2005) 4.62
An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice. Nat Genet (2009) 3.05
NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence. Nucleic Acids Res (2005) 2.58
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinformatics (2008) 2.33
SISYPHUS--structural alignments for proteins with non-trivial relationships. Nucleic Acids Res (2006) 2.18
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nat Protoc (2012) 2.14
Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS Comput Biol (2006) 1.46
A machine learning strategy to identify candidate binding sites in human protein-coding sequence. BMC Bioinformatics (2006) 1.08
Characterizing genetic variants for clinical action. Am J Med Genet C Semin Med Genet (2014) 1.02
CASP5 target classification. Proteins (2003) 1.01
The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression. Mol Cancer (2010) 0.94
What can we learn from noncoding regions of similarity between genomes? BMC Bioinformatics (2004) 0.80
iMotifs: an integrated sequence motif visualization and analysis environment. Bioinformatics (2010) 0.79
Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning. Sci Rep (2017) 0.75