Published in AMIA Annu Symp Proc on November 13, 2010
Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis. J Am Med Inform Assoc (2011) 1.44
Predicting adverse drug events from personal health messages. AMIA Annu Symp Proc (2011) 1.40
A pipeline to extract drug-adverse event pairs from multiple data sources. BMC Med Inform Decis Mak (2014) 1.21
Mining adverse drug reactions from online healthcare forums using hidden Markov model. BMC Med Inform Decis Mak (2014) 1.12
Enhancing adverse drug event detection in electronic health records using molecular structure similarity: application to pancreatitis. PLoS One (2012) 0.95
Detection of drug-drug interactions by modeling interaction profile fingerprints. PLoS One (2013) 0.95
The potential of translational bioinformatics approaches for pharmacology research. Br J Clin Pharmacol (2015) 0.86
Standardizing adverse drug event reporting data. J Biomed Semantics (2014) 0.85
A Mixture Dose-Response Model for Identifying High-Dimensional Drug Interaction Effects on Myopathy Using Electronic Medical Record Databases. CPT Pharmacometrics Syst Pharmacol (2015) 0.79
The contribution of the vaccine adverse event text mining system to the classification of possible Guillain-Barré syndrome reports. Appl Clin Inform (2013) 0.79
Automatic identification and normalization of dosage forms in drug monographs. BMC Med Inform Decis Mak (2012) 0.78
IDAAPM: integrated database of ADMET and adverse effects of predictive modeling based on FDA approved drug data. J Cheminform (2016) 0.78
Graphic Mining of High-Order Drug Interactions and Their Directional Effects on Myopathy Using Electronic Medical Records. CPT Pharmacometrics Syst Pharmacol (2015) 0.78
Automated encoding of clinical documents based on natural language processing. J Am Med Inform Assoc (2004) 11.48
Use of screening algorithms and computer systems to efficiently signal higher-than-expected combinations of drugs and events in the US FDA's spontaneous reports database. Drug Saf (2002) 4.15
Quantitative signal detection using spontaneous ADR reporting. Pharmacoepidemiol Drug Saf (2009) 3.96
A Bayesian neural network method for adverse drug reaction signal generation. Eur J Clin Pharmacol (1998) 3.88
Application of data mining techniques in pharmacovigilance. Br J Clin Pharmacol (2004) 2.32
Mining multi-item drug adverse effect associations in spontaneous reporting systems. BMC Bioinformatics (2010) 2.17
Novel statistical tools for monitoring the safety of marketed drugs. Clin Pharmacol Ther (2007) 2.12
Perspectives on the use of data mining in pharmaco-vigilance. Drug Saf (2005) 2.00
The role of data mining in pharmacovigilance. Expert Opin Drug Saf (2005) 1.81
Data mining for signals in spontaneous reporting databases: proceed with caution. Pharmacoepidemiol Drug Saf (2007) 1.61
Signalling possible drug-drug interactions in a spontaneous reporting system: delay of withdrawal bleeding during concomitant use of oral contraceptives and itraconazole. Br J Clin Pharmacol (1999) 1.46
Disproportionality analysis using empirical Bayes data mining: a tool for the evaluation of drug interactions in the post-marketing setting. Pharmacoepidemiol Drug Saf (2003) 1.41
Detecting signals of drug-drug interactions in a spontaneous reports database. Br J Clin Pharmacol (2007) 1.17
A pharmacovigilance program from laboratory signals for the detection and reporting of serious adverse drug reactions in hospitalized patients. Clin Pharmacol Ther (2009) 1.10
Mining for adverse drug events with formal concept analysis. Stud Health Technol Inform (2008) 0.90
Annual report to the nation on the status of cancer, 1975-2002, featuring population-based trends in cancer treatment. J Natl Cancer Inst (2005) 8.36
Use of natural language processing to translate clinical information from a database of 889,921 chest radiographic reports. Radiology (2002) 5.52
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J Biomed Inform (2004) 4.57
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS. J Am Med Inform Assoc (2002) 4.24
Proton pump inhibitors and risk for recurrent Clostridium difficile infection among inpatients. Am J Gastroenterol (2013) 4.10
Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study. J Am Med Inform Assoc (2009) 3.62
Mapping abbreviations to full forms in biomedical articles. J Am Med Inform Assoc (2002) 3.29
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. J Am Med Inform Assoc (2007) 3.09
Comparing ICD9-encoded diagnoses and NLP-processed discharge summaries for clinical trials pre-screening: a case study. AMIA Annu Symp Proc (2008) 3.00
System architecture for temporal information extraction, representation and reasoning in clinical narrative reports. AMIA Annu Symp Proc (2005) 2.93
Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics (2004) 2.72
A multi-aspect comparison study of supervised word sense disambiguation. J Am Med Inform Assoc (2004) 2.67
A study of abbreviations in clinical notes. AMIA Annu Symp Proc (2007) 2.48
Extracting information on pneumonia in infants using natural language processing of radiology reports. J Biomed Inform (2005) 2.48
A study of abbreviations in MEDLINE abstracts. Proc AMIA Symp (2002) 2.44
Extracting phenotypic information from the literature via natural language processing. Stud Health Technol Inform (2004) 2.36
Facilitating cancer research using natural language processing of pathology reports. Stud Health Technol Inform (2004) 2.28
Mining multi-item drug adverse effect associations in spontaneous reporting systems. BMC Bioinformatics (2010) 2.17
Exploiting semantic relations for literature-based discovery. AMIA Annu Symp Proc (2006) 2.15
Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics (2007) 2.15
Gene symbol disambiguation using knowledge-based profiles. Bioinformatics (2007) 2.13
Cancer mortality surveillance--United States, 1990-2000. MMWR Surveill Summ (2004) 1.94
Colorectal cancer in U.S. adults younger than 50 years of age, 1998-2001. Cancer (2006) 1.94
Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues. BMC Bioinformatics (2006) 1.93
Information Visualization Techniques in Bioinformatics during the Postgenomic Era. Drug Discov Today Biosilico (2004) 1.85
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. Pac Symp Biocomput (2006) 1.76
Syndromic surveillance using ambulatory electronic health records. J Am Med Inform Assoc (2009) 1.64
Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions. J Am Med Inform Assoc (2012) 1.60
Of truth and pathways: chasing bits of information through myriads of articles. Bioinformatics (2002) 1.56
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles. Proc AMIA Symp (2002) 1.55
National trends and disparities in the incidence of hepatocellular carcinoma, 1998-2003. Prev Chronic Dis (2008) 1.55
Investigation of postoperative allograft-associated infections in patients who underwent musculoskeletal allograft implantation. Clin Infect Dis (2005) 1.53
Mining terminological knowledge in large biomedical corpora. Pac Symp Biocomput (2003) 1.52
Descriptive epidemiology of colorectal cancer in the United States, 1998-2001. Cancer (2006) 1.46
Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis. J Am Med Inform Assoc (2011) 1.44
Facilitating research in pathology using natural language processing. AMIA Annu Symp Proc (2003) 1.42
A comparison of the Charlson comorbidities derived from medical language processing and administrative data. Proc AMIA Symp (2002) 1.38
Semantic classification of biomedical concepts using distributional similarity. J Am Med Inform Assoc (2007) 1.35
CliniViewer: a tool for viewing electronic medical records based on natural language processing and XML. Stud Health Technol Inform (2004) 1.33
Discovering disease associations by integrating electronic clinical data and medical literature. PLoS One (2011) 1.32
A drug-adverse event extraction algorithm to support pharmacovigilance knowledge mining from PubMed citations. AMIA Annu Symp Proc (2011) 1.31
Word sense disambiguation via semantic type classification. AMIA Annu Symp Proc (2008) 1.30
Discovery of protein interaction networks shared by diseases. Pac Symp Biocomput (2007) 1.30
ISO reference terminology models for nursing: applicability for natural language processing of nursing narratives. Int J Med Inform (2005) 1.30
Drug-drug interaction through molecular structure similarity analysis. J Am Med Inform Assoc (2012) 1.25
Methods for building sense inventories of abbreviations in clinical notes. J Am Med Inform Assoc (2008) 1.24
Human and automated coding of rehabilitation discharge summaries according to the International Classification of Functioning, Disability, and Health. J Am Med Inform Assoc (2006) 1.23
Generating executable knowledge for evidence-based medicine using natural language and semantic processing. AMIA Annu Symp Proc (2006) 1.20
A comparison of semantic categories of the ISO reference terminology models for nursing and the MedLEE natural language processing system. Stud Health Technol Inform (2004) 1.19
Use of computerized surveillance to detect nosocomial pneumonia in neonatal intensive care unit patients. Am J Infect Control (2005) 1.19
Quantitative assessment of dictionary-based protein named entity tagging. J Am Med Inform Assoc (2006) 1.19
Characterizing environmental and phenotypic associations using information theory and electronic health records. BMC Bioinformatics (2009) 1.16
A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury. J Am Med Inform Assoc (2013) 1.14
Effect of the frequency of delivery of reminders and an influenza tool kit on increasing influenza vaccination rates among adults with high-risk conditions. Am J Manag Care (2004) 1.11
Detection of practice pattern trends through Natural Language Processing of clinical narratives and biomedical literature. AMIA Annu Symp Proc (2007) 1.10
Natural language processing challenges in HIV/AIDS clinic notes. AMIA Annu Symp Proc (2003) 1.08
Representing nested semantic information in a linear string of text using XML. Proc AMIA Symp (2002) 1.07
Using contextual and lexical features to restructure and validate the classification of biomedical concepts. BMC Bioinformatics (2007) 1.07
Does health insurance coverage of office visits influence colorectal cancer testing? Cancer Epidemiol Biomarkers Prev (2005) 1.03
Selecting information in electronic health records for knowledge acquisition. J Biomed Inform (2010) 1.03
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics (2009) 1.01
The influence of year-end bonuses on colorectal cancer screening. Am J Manag Care (2004) 1.01
Automated knowledge acquisition from clinical narrative reports. AMIA Annu Symp Proc (2008) 1.00
Combining corpus-derived sense profiles with estimated frequency information to disambiguate clinical abbreviations. AMIA Annu Symp Proc (2012) 0.99
Deriving comorbidities from medical records using natural language processing. J Am Med Inform Assoc (2013) 0.99
Probabilistic inference of molecular networks from noisy data sources. Bioinformatics (2004) 0.98
Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics (2004) 0.96
Integrating heterogeneous knowledge sources to acquire executable drug-related knowledge. AMIA Annu Symp Proc (2010) 0.96
Enhancing adverse drug event detection in electronic health records using molecular structure similarity: application to pancreatitis. PLoS One (2012) 0.95
Detection of drug-drug interactions by modeling interaction profile fingerprints. PLoS One (2013) 0.95
A method for controlling complex confounding effects in the detection of adverse drug reactions using electronic health records. J Am Med Inform Assoc (2013) 0.95
Disseminating natural language processed clinical narratives. AMIA Annu Symp Proc (2006) 0.95
Determining the reasons for medication prescriptions in the EHR using knowledge and natural language processing. AMIA Annu Symp Proc (2011) 0.94
Semantic reclassification of the UMLS concepts. Bioinformatics (2008) 0.92
A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database. AMIA Annu Symp Proc (2006) 0.89
Natural language processing and visualization in the molecular imaging domain. J Biomed Inform (2006) 0.89
Aligning Structured and Unstructured Medical Problems Using UMLS. AMIA Annu Symp Proc (2010) 0.89
State of the art and development of a drug-drug interaction large scale predictor based on 3D pharmacophoric similarity. Curr Drug Metab (2014) 0.88
An automated tool for detecting medication overuse based on the electronic health records. Pharmacoepidemiol Drug Saf (2012) 0.88
Deriving a probabilistic syntacto-semantic grammar for biomedicine based on domain-specific terminologies. J Biomed Inform (2011) 0.87
Methods for building sense inventories of abbreviations in clinical notes. AMIA Annu Symp Proc (2008) 0.86
Generating quality word sense disambiguation test sets based on MeSH indexing. AMIA Annu Symp Proc (2009) 0.84
A new clustering method for detecting rare senses of abbreviations in clinical notes. J Biomed Inform (2012) 0.81
Terminology model discovery using natural language processing and visualization techniques. J Biomed Inform (2006) 0.81
Evaluation considerations for EHR-based phenotyping algorithms: A case study for drug-induced liver injury. AMIA Jt Summits Transl Sci Proc (2013) 0.81
Qualitative assessment of the International Classification of Functioning, Disability, and Health with respect to the desiderata for controlled medical vocabularies. Int J Med Inform (2005) 0.81
Vitamin D resistance in chronic kidney disease (CKD). BMC Nephrol (2014) 0.80
Extending a medical language processing system to the functional status domain. AMIA Annu Symp Proc (2005) 0.79
Predicting monoamine oxidase inhibitory activity through ligand-based models. Curr Top Med Chem (2012) 0.78
Foreword: promoting the use of registry-based national cancer surveillance data for colorectal cancer prevention and control. Cancer (2006) 0.78
Natural language processing in the molecular imaging domain. AMIA Annu Symp Proc (2005) 0.77