Published in Transcription on March 01, 2011
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Dissecting the cis and trans elements that regulate adjacent-gene coregulation in Saccharomyces cerevisiae. Eukaryot Cell (2014) 0.76
Genomic insights into the different layers of gene regulation in yeast. Genet Res Int (2011) 0.76
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Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast. Nucleic Acids Res (2017) 0.75
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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet (2001) 13.05
Predicting gene expression from sequence. Cell (2004) 8.12
Identification and distinct regulation of yeast TATA box-containing genes. Cell (2004) 6.27
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol (2008) 5.71
High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res (2009) 5.11
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev (2004) 5.08
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell (2004) 4.21
Two strategies for gene regulation by promoter nucleosomes. Genome Res (2008) 4.19
Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. Proc Natl Acad Sci U S A (2005) 3.58
Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr Opin Struct Biol (2009) 3.43
Transcription factor substitution during the evolution of fungal ribosome regulation. Mol Cell (2008) 3.13
Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (2005) 3.10
Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. Proc Natl Acad Sci U S A (2004) 2.99
Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol (2004) 2.81
Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. Nature (2004) 2.51
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The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes. Nature (2004) 2.37
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What better measure than ribosome synthesis? Genes Dev (2004) 2.13
Growth control and ribosome biogenesis. Curr Opin Cell Biol (2009) 2.11
Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res (2009) 2.05
DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics (1999) 2.02
Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins. EMBO J (2005) 1.92
Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Genomics (2009) 1.79
Evolutionary tinkering with conserved components of a transcriptional regulatory network. PLoS Biol (2010) 1.67
Fine-structure analysis of ribosomal protein gene transcription. Mol Cell Biol (2006) 1.61
A complete set of nascent transcription rates for yeast genes. PLoS One (2010) 1.56
The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast (2006) 1.37
Gene duplication and the evolution of ribosomal protein gene regulation in yeast. Proc Natl Acad Sci U S A (2010) 1.33
Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. J Biol Chem (2007) 1.28
Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression. Nucleic Acids Res (2003) 1.27
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays. Genome Biol (2010) 1.20
Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6. Proc Natl Acad Sci U S A (2009) 1.20
Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription. Mol Cell Biol (2007) 1.18
TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation. Nature (2010) 1.12
Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast. Mol Biol Cell (2008) 1.09
The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Mol Cell (2010) 1.07
Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression. PLoS One (2008) 1.05
Is ribosome synthesis controlled by pol I transcription? Cell Cycle (2007) 0.98
In vivo topography of Rap1p-DNA complex at Saccharomyces cerevisiae TEF2 UAS(RPG) during transcriptional regulation. J Mol Biol (2002) 0.95
Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae. Nucleic Acids Res (2010) 0.94
Stb3 plays a role in the glucose-induced transition from quiescence to growth in Saccharomyces cerevisiae. Genetics (2010) 0.89
Tbf1 or not Tbf1? Mol Cell (2008) 0.81
Characteristic differences between the promoters of intron-containing and intronless ribosomal protein genes in yeast. BMC Res Notes (2008) 0.76
Mammalian Rap1 widens its impact. Nat Cell Biol (2010) 0.75
Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III. J Biol Chem (2005) 1.65
RNA polymerase III transcription control elements: themes and variations. Gene (2011) 1.35
Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila. PLoS Genet (2009) 1.30
New small nuclear RNA gene-like transcriptional units as sources of regulatory transcripts. PLoS Genet (2006) 1.14
Widespread occurrence of non-canonical transcription termination by human RNA polymerase III. Nucleic Acids Res (2011) 1.13
An Alu-like RNA promotes cell differentiation and reduces malignancy of human neuroblastoma cells. FASEB J (2010) 1.08
17A, a novel non-coding RNA, regulates GABA B alternative splicing and signaling in response to inflammatory stimuli and in Alzheimer disease. Neurobiol Dis (2010) 1.07
The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Mol Cell (2010) 1.07
Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation. Proc Natl Acad Sci U S A (2004) 1.06
A composite upstream sequence motif potentiates tRNA gene transcription in yeast. J Mol Biol (2003) 1.05
RNA polymerase III drives alternative splicing of the potassium channel-interacting protein contributing to brain complexity and neurodegeneration. J Cell Biol (2011) 1.01
Gene expression waves. Cell cycle independent collective dynamics in cultured cells. FEBS J (2007) 1.00
Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription. Proc Natl Acad Sci U S A (2009) 0.99
Nucleosome depletion activates poised RNA polymerase III at unconventional transcription sites in Saccharomyces cerevisiae. J Biol Chem (2006) 0.98
Visualizing RNA extrusion and DNA wrapping in transcription elongation complexes of bacterial and eukaryotic RNA polymerases. J Mol Biol (2003) 0.98
HMGB1 induces the overexpression of miR-222 and miR-221 and increases growth and motility in papillary thyroid cancer cells. Oncol Rep (2012) 0.97
Modulation of yeast genome expression in response to defective RNA polymerase III-dependent transcription. Mol Cell Biol (2005) 0.97
In vivo topography of Rap1p-DNA complex at Saccharomyces cerevisiae TEF2 UAS(RPG) during transcriptional regulation. J Mol Biol (2002) 0.95
Requirement of Nhp6 proteins for transcription of a subset of tRNA genes and heterochromatin barrier function in Saccharomyces cerevisiae. Mol Cell Biol (2006) 0.94
One-pot TiO2-catalyzed synthesis of nucleic bases and acyclonucleosides from formamide: implications for the origin of life. Chembiochem (2003) 0.93
A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III. J Biol Chem (2006) 0.91
An intronic ncRNA-dependent regulation of SORL1 expression affecting Aβ formation is upregulated in post-mortem Alzheimer's disease brain samples. Dis Model Mech (2012) 0.91
The transcription reinitiation properties of RNA polymerase III in the absence of transcription factors. Cell Mol Biol Lett (2007) 0.85
A novel snRNA-like transcript affects amyloidogenesis and cell cycle progression through perturbation of Fe65L1 (APBB2) alternative splicing. Biochim Biophys Acta (2013) 0.85
Transcriptional response of human umbilical vein endothelial cells to low doses of ionizing radiation. J Radiat Res (2005) 0.85
Distinct DNA elements contribute to Rap1p affinity for its binding sites. J Mol Biol (2004) 0.85
HUVEC respond to radiation by inducing the expression of pro-angiogenic microRNAs. Radiat Res (2011) 0.85
Transcription reinitiation properties of bacteriophage T7 RNA polymerase. Biochem Biophys Res Commun (2004) 0.84
Histone Methylation and microRNA-dependent Regulation of Epigenetic Activities in Neural Progenitor Self-Renewal and Differentiation. Curr Top Med Chem (2017) 0.82
Low-dose ionizing radiation stimulates transcription and production of endothelin by human vein endothelial cells. Radiat Res (2007) 0.81
Gene expression pathways induced by axotomy and decentralization of rat superior cervical ganglion neurons. Eur J Neurosci (2006) 0.81
The Murine PSE/TATA-dependent transcriptome: evidence of functional homologies with its human counterpart. Int J Mol Sci (2012) 0.80
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells. Database (Oxford) (2009) 0.79
Differentiated neuroprogenitor cells incubated with human or canine adenovirus, or lentiviral vectors have distinct transcriptome profiles. PLoS One (2013) 0.79
Functional dissection of RNA polymerase III termination using a peptide nucleic acid as a transcriptional roadblock. J Biol Chem (2004) 0.79
The COP9 signalosome is involved in the regulation of lipid metabolism and of transition metals uptake in Saccharomyces cerevisiae. FEBS J (2013) 0.78
The bromodomain-containing protein Bdf1p acts as a phenotypic and transcriptional multicopy suppressor of YAF9 deletion in yeast. Mol Microbiol (2004) 0.77
A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes. Genomics (2010) 0.77
General transcription factors and subunits of RNA polymerase III: Paralogs for promoter- and cell type-specific transcription in multicellular eukaryotes. Transcription (2010) 0.76
Direct interaction of Gas41 and Myc encoded by amplified genes in nervous system tumours. Acta Biochim Pol (2011) 0.76
Lack of dystrophin in mdx mice modulates the expression of genes involved in neuron survival and differentiation. Eur J Neurosci (2012) 0.76
Cesium chloride sensing and signaling in Saccharomyces cerevisiae: an interplay among the HOG and CWI MAPK pathways and the transcription factor Yaf9. FEMS Yeast Res (2009) 0.76
Selenite transiently represses transcription of photosynthesis-related genes in potato leaves. Photosynth Res (2007) 0.76
Assembly into snoRNP controls 5'-end maturation of a box C/D snoRNA in Saccharomyces cerevisiae. Biochem Biophys Res Commun (2006) 0.76
Oligonucleotide microarray-based detection and genotyping of Plum pox virus. J Virol Methods (2007) 0.75
Dose-dependent onset of regenerative program in neutron irradiated mouse skin. PLoS One (2011) 0.75
Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride. Physiol Genomics (2008) 0.75
Synchronous protein cycling in batch cultures of the yeast Saccharomyces cerevisiae at log growth phase. Exp Cell Res (2011) 0.75
Corrigendum: Abiotic ligation of DNA oligomers templated by their liquid crystal ordering. Nat Commun (2015) 0.75
The transcriptional response of mammalian cancer cells to irradiation is dominated by a cell cycle signature which is strongly attenuated in non-cancer cells and tissues. Int J Radiat Biol (2012) 0.75