Published in Am J Bot on December 01, 2005
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol (2010) 2.50
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol (2009) 2.40
Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Syst Biol (2011) 1.50
Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus. PLoS Genet (2016) 1.38
Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae). BMC Evol Biol (2012) 1.23
From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Philos Trans R Soc Lond B Biol Sci (2006) 1.19
Parsimonious inference of hybridization in the presence of incomplete lineage sorting. Syst Biol (2013) 1.01
Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles. J Comput Biol (2011) 0.97
Phylogenomic analysis resolves the formerly intractable adaptive diversification of the endemic clade of east Asian Cyprinidae (Cypriniformes). PLoS One (2010) 0.83
Niche divergence versus neutral processes: combined environmental and genetic analyses identify contrasting patterns of differentiation in recently diverged pine species. PLoS One (2013) 0.80
An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. BMC Evol Biol (2014) 0.80
Incongruence among mitochondrial, chloroplast and nuclear gene trees in Pinus subgenus Strobus (Pinaceae). J Plant Res (2009) 0.80
Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria. BMC Bioinformatics (2012) 0.78
Clones identification of Sequoia sempervirens (D. Don) Endl. in Chile by using PCR-RAPDs technique. J Zhejiang Univ Sci B (2009) 0.78
Contributions of multiple refugia during the last glacial period to current mainland populations of Korean pine (Pinus koraiensis). Sci Rep (2015) 0.76
Fossils matter: improved estimates of divergence times in Pinus reveal older diversification. BMC Evol Biol (2017) 0.75
A set of plastid loci for use in multiplex fragment length genotyping for intraspecific variation in Pinus (Pinaceae). Appl Plant Sci (2014) 0.75
The genome of woodland strawberry (Fragaria vesca). Nat Genet (2010) 5.86
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res (2008) 5.00
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci U S A (2003) 4.62
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol (2009) 2.40
Molecular phylogenetics of the clover genus (Trifolium--Leguminosae). Mol Phylogenet Evol (2006) 2.04
Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus. Mol Biol Evol (2006) 2.00
Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics. Am J Bot (2011) 1.82
Targeted enrichment strategies for next-generation plant biology. Am J Bot (2012) 1.47
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. BMC Genomics (2011) 1.26
Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae). BMC Evol Biol (2012) 1.23
Widespread genealogical nonmonophyly in species of Pinus subgenus Strobus. Syst Biol (2007) 1.16
Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing. Mol Phylogenet Evol (2012) 1.15
Reticulate evolution and incomplete lineage sorting among the ponderosa pines. Mol Phylogenet Evol (2009) 1.10
Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. PLoS One (2011) 1.10
Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae). G3 (Bethesda) (2013) 1.06
Intraspecific chromosome number variation: a neglected threat to the conservation of rare plants. Conserv Biol (2008) 1.00
Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana. Mol Ecol (2007) 0.99
Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae). Am J Bot (2003) 0.95
Use of the chloroplast gene ycf1 for the genetic differentiation of pine nuts obtained from consumers experiencing dysgeusia. J Agric Food Chem (2011) 0.93
Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). Genome Biol Evol (2013) 0.92
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore. BMC Ecol (2011) 0.91
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. BMC Genomics (2013) 0.90
Phylogenetic insights into the correlates of dioecy in meadow-rues (Thalictrum, Ranunculaceae). Mol Phylogenet Evol (2012) 0.87
Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing. Genome Biol Evol (2013) 0.84
Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon. Mol Ecol (2009) 0.82
Length and sequence heterogeneity in 5S rDNA of Populus deltoides. Genome (2002) 0.81
Chloroplast diversity in a putative hybrid swarm of Ponderosae (Pinaceae). Am J Bot (2009) 0.80
An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. BMC Evol Biol (2014) 0.80
Bioclimatic, ecological, and phenotypic intermediacy and high genetic admixture in a natural hybrid of octoploid strawberries. Am J Bot (2013) 0.79
Genetic diversity of the narrow endemic Astragalus oniciformis (Fabaceae). Am J Bot (2004) 0.78
Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family-wide utility. Am J Bot (2011) 0.78
An evaluation of putative sympatric speciation within Limnanthes (Limnanthaceae). PLoS One (2012) 0.77
Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae). Am J Bot (2011) 0.77
Tangled trios?: Characterizing a hybrid zone in Castilleja (Orobanchaceae). Am J Bot (2009) 0.75
Implications of nonadventitious rhizome spread on reproduction, inbreeding, and conservation for a rare grassland legume. J Hered (2011) 0.75