Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum.

PubWeight™: 1.00‹?› | Rank: Top 15%

🔗 View Article (PMID 21735233)

Published in Plant Cell Rep on July 07, 2011

Authors

Jian Wu1, Feiyan Wang, Lin Cheng, Fuling Kong, Zhen Peng, Songyu Liu, Xiaolin Yu, Gang Lu

Author Affiliations

1: Key Laboratory of Horticultural Plant Growth, Development and Biotechnology, Agricultural Ministry of China, Hangzhou, 310058, People's Republic of China.

Articles citing this

Retracted Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis. PLoS One (2014) 1.44

Failure of the tomato trans-acting short interfering RNA program to regulate AUXIN RESPONSE FACTOR3 and ARF4 underlies the wiry leaf syndrome. Plant Cell (2012) 1.22

Characterization of the tomato ARF gene family uncovers a multi-levels post-transcriptional regulation including alternative splicing. PLoS One (2014) 1.08

Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model. Mol Genet Genomics (2012) 1.02

The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress. DNA Res (2013) 0.97

Genome-wide identification of MAPKK and MAPKKK gene families in tomato and transcriptional profiling analysis during development and stress response. PLoS One (2014) 0.89

Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (2014) 0.88

A Review of Auxin Response Factors (ARFs) in Plants. Front Plant Sci (2016) 0.83

Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development. J Exp Bot (2015) 0.83

The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress. Front Plant Sci (2015) 0.83

Spatiotemporal transcriptome provides insights into early fruit development of tomato (Solanum lycopersicum). Sci Rep (2016) 0.83

Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis). Front Plant Sci (2015) 0.82

Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis. PLoS One (2014) 0.80

De novo Transcriptome Sequencing and Development of Abscission Zone-Specific Microarray as a New Molecular Tool for Analysis of Tomato Organ Abscission. Front Plant Sci (2016) 0.79

Genome-wide identification of auxin response factor (ARF) genes and its tissue-specific prominent expression in Gossypium raimondii. Funct Integr Genomics (2015) 0.79

Heme oxygenase-1 is involved in sodium hydrosulfide-induced lateral root formation in tomato seedlings. Plant Cell Rep (2014) 0.79

Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress. Funct Integr Genomics (2012) 0.78

Genome-wide analysis and expression profiling suggest diverse roles of GH3 genes during development and abiotic stress responses in legumes. Front Plant Sci (2015) 0.77

Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato. J Exp Bot (2014) 0.77

Genome-wide identification and transcriptional profiling analysis of auxin response-related gene families in cucumber. BMC Res Notes (2014) 0.77

Irrepressible, truncated auxin response factors: natural roles and applications in dissecting auxin gene regulation pathways. Plant Signal Behav (2012) 0.77

β-Cyclodextrin-hemin complex-induced lateral root formation in tomato: involvement of nitric oxide and heme oxygenase 1. Plant Cell Rep (2014) 0.76

Auxin Response Factor Genes Repertoire in Mulberry: Identification, and Structural, Functional and Evolutionary Analyses. Genes (Basel) (2017) 0.75

Articles cited by this

The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36

The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell (2004) 6.52

ARF1, a transcription factor that binds to auxin response elements. Science (1997) 5.64

Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci U S A (2000) 4.90

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell (2005) 4.41

Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci U S A (1999) 4.21

The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell (2003) 4.19

Auxin response factors. Curr Opin Plant Biol (2007) 3.97

Dimerization and DNA binding of auxin response factors. Plant J (1999) 3.89

Mining EST databases to resolve evolutionary events in major crop species. Genome (2004) 3.82

ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell (2007) 3.28

Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell (2002) 2.97

Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (2005) 2.97

The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev (2002) 2.90

Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell (2006) 2.73

MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana. Plant Cell (2004) 2.59

Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiol (2004) 2.41

AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development (2005) 2.34

NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. Plant J (2005) 2.32

Maize as a model for the evolution of plant nuclear genomes. Proc Natl Acad Sci U S A (2000) 2.29

Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Dev Cell (2006) 2.03

miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96

Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. Proc Natl Acad Sci U S A (2008) 1.91

GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol (2008) 1.72

AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell (2006) 1.61

The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development. Plant J (2008) 1.58

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene (2007) 1.51

Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol (2007) 1.50

Auxin signaling. Curr Opin Plant Biol (2006) 1.49

Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato. Plant Physiol (2007) 1.48

Prevalence of intron gain over intron loss in the evolution of paralogous gene families. Nucleic Acids Res (2004) 1.42

AUXIN RESPONSE FACTOR7 restores the expression of auxin-responsive genes in mutant Arabidopsis leaf mesophyll protoplasts. Plant Cell (2005) 1.40

Down-regulation of DR12, an auxin-response-factor homolog, in the tomato results in a pleiotropic phenotype including dark green and blotchy ripening fruit. Plant J (2002) 1.39

The role of auxin and gibberellin in tomato fruit set. J Exp Bot (2009) 1.34

The evolution of nuclear auxin signalling. BMC Evol Biol (2009) 1.27

Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol (2003) 1.24

Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. J Exp Bot (2010) 1.23

A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol (2006) 1.17

The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR. Gene (2009) 1.13

Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol Genet Genomics (2011) 1.08

Down-regulation of an Auxin Response Factor in the tomato induces modification of fine pectin structure and tissue architecture. J Exp Bot (2008) 1.06

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). J Exp Bot (2010) 1.02

Articles by these authors

Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia. Nat Genet (2011) 6.98

Discovery of tissue-specific exons using comprehensive human exon microarrays. Genome Biol (2007) 5.53

Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature (2003) 5.04

Transformation by the (R)-enantiomer of 2-hydroxyglutarate linked to EGLN activation. Nature (2012) 4.37

Cancer prevention by tea: animal studies, molecular mechanisms and human relevance. Nat Rev Cancer (2009) 3.90

A tweezers-like motion of the ATP-binding cassette dimer in an ABC transport cycle. Mol Cell (2003) 3.88

p38 MAP kinase inhibition enables proliferation of adult mammalian cardiomyocytes. Genes Dev (2005) 3.88

Single-layer MoS2 phototransistors. ACS Nano (2011) 3.43

Probe selection for high-density oligonucleotide arrays. Proc Natl Acad Sci U S A (2003) 3.31

Gene structure-based splice variant deconvolution using a microarray platform. Bioinformatics (2003) 2.97

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res (2005) 2.65

Nonreceptor tyrosine kinase BMX maintains self-renewal and tumorigenic potential of glioblastoma stem cells by activating STAT3. Cancer Cell (2011) 2.04

Biocompatibility and osteogenesis of biomimetic nano-hydroxyapatite/polyamide composite scaffolds for bone tissue engineering. Biomaterials (2007) 1.97

Primate-specific microRNA-637 inhibits tumorigenesis in hepatocellular carcinoma by disrupting signal transducer and activator of transcription 3 signaling. Hepatology (2011) 1.93

Adiponectin inhibits cell proliferation by interacting with several growth factors in an oligomerization-dependent manner. J Biol Chem (2005) 1.92

ANOSVA: a statistical method for detecting splice variation from expression data. Bioinformatics (2005) 1.88

Cyclophilin D inactivation protects axons in experimental autoimmune encephalomyelitis, an animal model of multiple sclerosis. Proc Natl Acad Sci U S A (2007) 1.76

Fabrication of single- and multilayer MoS2 film-based field-effect transistors for sensing NO at room temperature. Small (2011) 1.69

Ex vivo delivered stromal cell-derived factor-1alpha promotes stem cell homing and induces angiomyogenesis in the infarcted myocardium. J Mol Cell Cardiol (2007) 1.61

Tea and cancer prevention: molecular mechanisms and human relevance. Toxicol Appl Pharmacol (2006) 1.61

Single-layer semiconducting nanosheets: high-yield preparation and device fabrication. Angew Chem Int Ed Engl (2011) 1.60

MiRNA-20a promotes osteogenic differentiation of human mesenchymal stem cells by co-regulating BMP signaling. RNA Biol (2011) 1.53

Poly[{μ(2)-1,2-bis-[4-(3-pyrid-yl)pyrimidin-2-ylsulfan-yl]ethane}di-μ(2)-cyanido-dicopper(I)]. Acta Crystallogr Sect E Struct Rep Online (2008) 1.52

Deubiquitylase HAUSP stabilizes REST and promotes maintenance of neural progenitor cells. Nat Cell Biol (2011) 1.49

MiR-637 maintains the balance between adipocytes and osteoblasts by directly targeting Osterix. Mol Biol Cell (2011) 1.46

Cancer stem cells in glioblastoma--molecular signaling and therapeutic targeting. Protein Cell (2010) 1.45

Loss of brain-enriched miR-124 microRNA enhances stem-like traits and invasiveness of glioma cells. J Biol Chem (2012) 1.43

Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res (2010) 1.36

Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease. Mol Cell (2011) 1.36

Simple sequence repeat-based consensus linkage map of Bombyx mori. Proc Natl Acad Sci U S A (2005) 1.35

Stable therapeutic effects of mesenchymal stem cell-based multiple gene delivery for cardiac repair. Cardiovasc Res (2007) 1.34

Centella asiatica accelerates nerve regeneration upon oral administration and contains multiple active fractions increasing neurite elongation in-vitro. J Pharm Pharmacol (2005) 1.33

Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains. J Biol Chem (2011) 1.32

A second ortho-rhom-bic polymorph of 3,5-diphenyl-4H-1,2,4-triazol-4-amine. Acta Crystallogr Sect E Struct Rep Online (2009) 1.30

The genome of the hydatid tapeworm Echinococcus granulosus. Nat Genet (2013) 1.29

A gamma-tocopherol-rich mixture of tocopherols inhibits colon inflammation and carcinogenesis in azoxymethane and dextran sulfate sodium-treated mice. Cancer Prev Res (Phila) (2009) 1.27

Antigen-specific therapy promotes repair of myelin and axonal damage in established EAE. J Neurochem (2006) 1.26

p38 MAP kinase mediates inflammatory cytokine induction in cardiomyocytes and extracellular matrix remodeling in heart. Circulation (2005) 1.26

Inhibition of carcinogenesis by tea constituents. Semin Cancer Biol (2007) 1.25

miR-200a regulates epithelial-mesenchymal to stem-like transition via ZEB2 and beta-catenin signaling. J Biol Chem (2010) 1.24

Dithienosilole- and dibenzosilole-thiophene copolymers as semiconductors for organic thin-film transistors. J Am Chem Soc (2006) 1.23

Intracellular Tat of human immunodeficiency virus type 1 activates lytic cycle replication of Kaposi's sarcoma-associated herpesvirus: role of JAK/STAT signaling. J Virol (2006) 1.22

Curcumin induces the differentiation of myeloid-derived suppressor cells and inhibits their interaction with cancer cells and related tumor growth. Cancer Prev Res (Phila) (2011) 1.21

CYP2A13 in human respiratory tissues and lung cancers: an immunohistochemical study with a new peptide-specific antibody. Drug Metab Dispos (2006) 1.18

Cloning and expression of the human N-acetylglutamate synthase gene. Biochem Biophys Res Commun (2002) 1.18

Preparation of novel 3D graphene networks for supercapacitor applications. Small (2011) 1.17

1,3-Bis[4-(4-pyrid-yl)pyrimidin-2-ylsulfan-yl]propane. Acta Crystallogr Sect E Struct Rep Online (2008) 1.17

Molecular targets for the cancer preventive activity of tea polyphenols. Mol Carcinog (2006) 1.17

Possible mechanisms of the cancer-preventive activities of green tea. Mol Nutr Food Res (2006) 1.17

High-performance transparent inorganic-organic hybrid thin-film n-type transistors. Nat Mater (2006) 1.16

A multi-directional backlight for a wide-angle, glasses-free three-dimensional display. Nature (2013) 1.15

Laminin alpha 2 enables glioblastoma stem cell growth. Ann Neurol (2012) 1.13

Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria. J Biol Chem (2005) 1.13

Computational identification and characterization of primate-specific microRNAs in human genome. Comput Biol Chem (2010) 1.11

Knockdown of interferon-induced transmembrane protein 1 (IFITM1) inhibits proliferation, migration, and invasion of glioma cells. J Neurooncol (2010) 1.11

Evaluating multipollutant exposure and urban air quality: pollutant interrelationships, neighborhood variability, and nitrogen dioxide as a proxy pollutant. Environ Health Perspect (2013) 1.10

Evaluation of protective immune responses induced by DNA vaccines encoding Toxoplasma gondii surface antigen 1 (SAG1) and 14-3-3 protein in BALB/c mice. Parasit Vectors (2012) 1.09

Gemini vitamin D analogues inhibit estrogen receptor-positive and estrogen receptor-negative mammary tumorigenesis without hypercalcemic toxicity. Cancer Prev Res (Phila) (2008) 1.08

Identification, cloning and expression of the mouse N-acetylglutamate synthase gene. Biochem J (2002) 1.07

Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis. J Bacteriol (2006) 1.06

Tris(ethyl-enediamine)zinc(II) dichloride monohydrate. Acta Crystallogr Sect E Struct Rep Online (2008) 1.06

Prospective identification, isolation, and profiling of a telomerase-expressing subpopulation of human neural stem cells, using sox2 enhancer-directed fluorescence-activated cell sorting. J Neurosci (2010) 1.05

Mapping the central effects of chronic ketamine administration in an adolescent primate model by functional magnetic resonance imaging (fMRI). Neurotoxicology (2011) 1.05

HIV-1 Tat promotes Kaposi's sarcoma-associated herpesvirus (KSHV) vIL-6-induced angiogenesis and tumorigenesis by regulating PI3K/PTEN/AKT/GSK-3β signaling pathway. PLoS One (2013) 1.05

The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation. J Biol Chem (2008) 1.04

Inhibition of lung cancer growth in mice by dietary mixed tocopherols. Mol Nutr Food Res (2009) 1.03

An effective method for the fabrication of few-layer-thick inorganic nanosheets. Angew Chem Int Ed Engl (2012) 1.03

Procalcitonin guidance for reduction of antibiotic use in low-risk outpatients with community-acquired pneumonia. Respirology (2011) 1.03

MYC protein inhibits transcription of the microRNA cluster MC-let-7a-1~let-7d via noncanonical E-box. J Biol Chem (2011) 1.02

SKLB1002, a novel potent inhibitor of VEGF receptor 2 signaling, inhibits angiogenesis and tumor growth in vivo. Clin Cancer Res (2011) 1.02

Virological and epidemiological evidence of avian influenza virus infections among feral dogs in live poultry markets, china: a threat to human health? Clin Infect Dis (2014) 1.02

Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model. Mol Genet Genomics (2012) 1.02

Transcriptional and epigenetic regulation of human microRNAs. Cancer Lett (2012) 1.02

Genome-wide analysis of the mitogen-activated protein kinase gene family in Solanum lycopersicum. Gene (2012) 1.01

Crystal structure of a transcarbamylase-like protein from the anaerobic bacterium Bacteroides fragilis at 2.0 A resolution. J Mol Biol (2002) 1.00

FK506 and a nonimmunosuppressant derivative reduce axonal and myelin damage in experimental autoimmune encephalomyelitis: neuroimmunophilin ligand-mediated neuroprotection in a model of multiple sclerosis. J Neurosci Res (2004) 0.99

The role of calcium in hypoxia-induced signal transduction and gene expression. Cell Calcium (2004) 0.99

Optical identification of single- and few-layer MoS₂ sheets. Small (2012) 0.98

The usefulness of the spontaneously hypertensive rat to model attention-deficit/hyperactivity disorder (ADHD) may be explained by the differential expression of dopamine-related genes in the brain. Neurochem Int (2007) 0.98

The first structurally characterized nitrosyl heme thiolate model complex. Chem Commun (Camb) (2006) 0.97

Serotonin 5-HT2A and 5-HT6 receptors in the prefrontal cortex of Alzheimer and normal aging patients. BMC Neurosci (2006) 0.97

4,6-Dimethyl-2-p-tolyl-pyrimidine. Acta Crystallogr Sect E Struct Rep Online (2009) 0.97

Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity. Proc Natl Acad Sci U S A (2013) 0.97

Mechanical exfoliation and characterization of single- and few-layer nanosheets of WSe₂ , TaS₂ , and TaSe₂. Small (2012) 0.97

Inhibition of intestinal tumorigenesis in Apc(min/+) mice by green tea polyphenols (polyphenon E) and individual catechins. Nutr Cancer (2007) 0.97

Proteomic characterization of human serum proteins associated with the fat-derived hormone adiponectin. Proteomics (2006) 0.96

Highly flexible polyelectrolyte nanotubes. J Am Chem Soc (2003) 0.96

A novel HLA-DRα1-MOG-35-55 construct treats experimental stroke. Metab Brain Dis (2014) 0.95

Plasmonic vesicles of amphiphilic gold nanocrystals: self-assembly and external-stimuli-triggered destruction. J Am Chem Soc (2011) 0.95

Induction of lytic cycle replication of Kaposi's sarcoma-associated herpesvirus by herpes simplex virus type 1: involvement of IL-10 and IL-4. Cell Microbiol (2007) 0.94

Fast track clinical pathway implications in esophagogastrectomy. World J Gastroenterol (2009) 0.94

Response to neoadjuvant therapy and disease free survival in patients with triple-negative breast cancer. Gan To Kagaku Ryoho (2009) 0.94

Physalins with anti-inflammatory activity are present in Physalis alkekengi var. franchetii and can function as Michael reaction acceptors. Steroids (2011) 0.93