Published in PLoS Pathog on August 18, 2011
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
Short read sequence typing (SRST): multi-locus sequence types from short reads. BMC Genomics (2012) 1.61
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing. PLoS One (2013) 1.52
The Salmonella pathogenicity island 13 contributes to pathogenesis in streptomycin pre-treated mice but not in day-old chickens. Gut Pathog (2016) 1.41
Evolutionary Genomics of Salmonella enterica Subspecies. MBio (2013) 1.17
Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence. Cell Mol Life Sci (2013) 1.15
Patterns of genome evolution that have accompanied host adaptation in Salmonella. Proc Natl Acad Sci U S A (2014) 1.11
T3_MM: a Markov model effectively classifies bacterial type III secretion signals. PLoS One (2013) 1.05
Type VI secretion system-associated gene clusters contribute to pathogenesis of Salmonella enterica serovar Typhimurium. Infect Immun (2012) 1.00
Multidrug efflux pumps from Enterobacteriaceae, Vibrio cholerae and Staphylococcus aureus bacterial food pathogens. Int J Environ Res Public Health (2015) 0.96
The type VI secretion system encoded in Salmonella pathogenicity island 19 is required for Salmonella enterica serotype Gallinarum survival within infected macrophages. Infect Immun (2013) 0.95
Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. BMC Genomics (2013) 0.95
Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences. Future Microbiol (2012) 0.93
Multiplicity of Salmonella entry mechanisms, a new paradigm for Salmonella pathogenesis. Microbiologyopen (2012) 0.92
Distinct type I and type II toxin-antitoxin modules control Salmonella lifestyle inside eukaryotic cells. Sci Rep (2015) 0.91
Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol (2012) 0.89
Bacterial secreted effectors and caspase-3 interactions. Cell Microbiol (2014) 0.88
Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One (2012) 0.87
Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity. PLoS Genet (2013) 0.87
The type VI secretion system encoded in SPI-6 plays a role in gastrointestinal colonization and systemic spread of Salmonella enterica serovar Typhimurium in the chicken. PLoS One (2013) 0.87
Silencing by H-NS potentiated the evolution of Salmonella. PLoS Pathog (2014) 0.86
'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution. Nat Rev Microbiol (2016) 0.86
Identification of immunogenic proteins and generation of antibodies against Salmonella Typhimurium using phage display. BMC Biotechnol (2012) 0.85
A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement. PLoS One (2012) 0.82
Molecular phenotyping of infection-associated small non-coding RNAs. Philos Trans R Soc Lond B Biol Sci (2016) 0.81
Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I. PLoS One (2013) 0.80
Loss of the lac operon contributes to Salmonella invasion of epithelial cells through derepression of flagellar synthesis. Curr Microbiol (2014) 0.79
The SdiA-regulated gene srgE encodes a type III secreted effector. J Bacteriol (2014) 0.78
Only one of the two type VI secretion systems encoded in the Salmonella enterica serotype Dublin genome is involved in colonization of the avian and murine hosts. Vet Res (2014) 0.78
Structural insight into effector proteins of Gram-negative bacterial pathogens that modulate the phosphoproteome of their host. Protein Sci (2015) 0.78
Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983. Stand Genomic Sci (2015) 0.78
Genome Sequence of Salmonella bongori Strain N268-08 [corrected]. Genome Announc (2013) 0.76
In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD. Sci Rep (2016) 0.76
Prevalence of Antimicrobial Resistant and Virulent Salmonella spp. in Treated Effluent and Receiving Aquatic Milieu of Wastewater Treatment Plants in Durban, South Africa. Int J Environ Res Public Health (2015) 0.75
The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis. Infect Immun (2016) 0.75
Acquisition of the lac operon by Salmonella enterica. BMC Microbiol (2015) 0.75
Acidic pH sensing in the bacterial cytoplasm is required for Salmonella virulence. Mol Microbiol (2016) 0.75
Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella Enteritidis. Vet Res (2014) 0.75
Comparative Genomics of Bacillus thuringiensis Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts. MBio (2017) 0.75
Whole-Genome Shotgun Sequence of Salmonella bongori, First Isolated in Northwestern Italy. Genome Announc (2017) 0.75
Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome. Front Cell Infect Microbiol (2017) 0.75
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A (2000) 96.90
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (2006) 87.59
ACT: the Artemis Comparison Tool. Bioinformatics (2005) 17.91
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature (2001) 16.89
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene (1995) 15.67
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature (2001) 15.44
Evolution of MRSA during hospital transmission and intercontinental spread. Science (2010) 13.34
A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Science (2006) 7.84
Determining divergence times of the major kingdoms of living organisms with a protein clock. Science (1996) 6.48
Gut inflammation provides a respiratory electron acceptor for Salmonella. Nature (2010) 6.25
Molecular genetic relationships of the salmonellae. Appl Environ Microbiol (1996) 5.66
Macrophage-dependent induction of the Salmonella pathogenicity island 2 type III secretion system and its role in intracellular survival. Mol Microbiol (1998) 5.25
Genes encoding putative effector proteins of the type III secretion system of Salmonella pathogenicity island 2 are required for bacterial virulence and proliferation in macrophages. Mol Microbiol (1998) 5.07
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol (2002) 4.96
Molecular genetic bases of Salmonella entry into host cells. Mol Microbiol (1996) 4.92
Viewing and annotating sequence data with Artemis. Brief Bioinform (2003) 4.38
Molecular relationships among the Salmonelleae. J Bacteriol (1973) 4.35
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinformatics (2006) 4.27
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics (2008) 4.25
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res (2009) 3.99
Molecular cloning, mapping, and regulation of Pho regulon genes for phosphonate breakdown by the phosphonatase pathway of Salmonella typhimurium LT2. J Bacteriol (1995) 3.94
Cobalamin (coenzyme B12): synthesis and biological significance. Annu Rev Microbiol (1996) 3.92
Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev (2004) 3.77
Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A (2002) 3.64
Contribution of Salmonella typhimurium virulence factors to diarrheal disease in calves. Infect Immun (1999) 3.46
Identification of the secretion and translocation domain of the enteropathogenic and enterohemorrhagic Escherichia coli effector Cif, using TEM-1 beta-lactamase as a new fluorescence-based reporter. J Bacteriol (2004) 3.41
Dissection of a type VI secretion system in Edwardsiella tarda. Mol Microbiol (2007) 3.37
Salmonella typhimurium leucine-rich repeat proteins are targeted to the SPI1 and SPI2 type III secretion systems. Mol Microbiol (1999) 3.15
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J Bacteriol (2008) 3.10
Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse. PLoS Pathog (2006) 2.95
Cutting edge: Salmonella AvrA effector inhibits the key proinflammatory, anti-apoptotic NF-kappa B pathway. J Immunol (2002) 2.70
Salmonella nomenclature. J Clin Microbiol (2000) 2.60
Salmonella pathogenicity island 2. Mol Microbiol (2000) 2.53
Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain. Proc Natl Acad Sci U S A (1999) 2.51
Transmissible substrate-utilizing ability in enterobacteria. J Gen Microbiol (1975) 2.46
The role of prophage-like elements in the diversity of Salmonella enterica serovars. J Mol Biol (2004) 2.45
Characterization of Salmonella enterica subspecies I genovars by use of microarrays. J Bacteriol (2004) 2.38
Salmonella SirA is a global regulator of genes mediating enteropathogenesis. Mol Microbiol (1999) 2.33
[The taxonomy of Salmonella]. Ann Microbiol (Paris) (1983) 2.27
The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol (2002) 2.18
Bayesian analysis of population structure based on linked molecular information. Math Biosci (2006) 2.11
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. Nucleic Acids Res (2000) 2.07
Molecular and phenotypic analysis of the CS54 island of Salmonella enterica serotype typhimurium: identification of intestinal colonization and persistence determinants. Infect Immun (2003) 1.94
Forces that influence the evolution of codon bias. Philos Trans R Soc Lond B Biol Sci (2010) 1.94
Attaching effacing Escherichia coli and paradigms of Tir-triggered actin polymerization: getting off the pedestal. Cell Microbiol (2007) 1.92
Distribution of pathogenicity islands in Salmonella spp. Infect Immun (1996) 1.92
Evolution of coenzyme B12 synthesis among enteric bacteria: evidence for loss and reacquisition of a multigene complex. Genetics (1996) 1.86
The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. J Bacteriol (2009) 1.85
Dynamics of intracellular bacterial replication at the single cell level. Proc Natl Acad Sci U S A (2010) 1.83
Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12. J Bacteriol (1997) 1.81
Anaerobic citrate metabolism and its regulation in enterobacteria Arch Microbiol (1997) 1.78
The SPI-3 pathogenicity island of Salmonella enterica. J Bacteriol (1999) 1.73
Why a co-substrate is required for anaerobic growth of Escherichia coli on citrate. J Gen Microbiol (1980) 1.70
The inflammation-associated Salmonella SopA is a HECT-like E3 ubiquitin ligase. Mol Microbiol (2006) 1.66
Molecular and functional analysis indicates a mosaic structure of Salmonella pathogenicity island 2. Mol Microbiol (1999) 1.57
Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis. Microbiology (2009) 1.56
Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain. J Biol Chem (2009) 1.55
[A proposal for Salmonella nomenclature]. Ann Microbiol (Paris) (1983) 1.53
Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics (2009) 1.53
Salmonella effectors within a single pathogenicity island are differentially expressed and translocated by separate type III secretion systems. Mol Microbiol (2002) 1.51
NleH effectors interact with Bax inhibitor-1 to block apoptosis during enteropathogenic Escherichia coli infection. Proc Natl Acad Sci U S A (2010) 1.43
Identification of novel genes in genomic islands that contribute to Salmonella typhimurium replication in macrophages. Microbiology (2007) 1.40
Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates. J Clin Microbiol (2007) 1.31
EspJ of enteropathogenic and enterohaemorrhagic Escherichia coli inhibits opsono-phagocytosis. Cell Microbiol (2008) 1.26
Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers. Cell Microbiol (2008) 1.25
[Differential diagnosis and pathogenicity of Salmonella java and Salmonella paratyphi B]. Z Hyg Infektionskr (1955) 1.21
Identification of Salmonella gallinarum virulence genes in a chicken infection model using PCR-based signature-tagged mutagenesis. Microbiology (2005) 1.21
The utilization of non-protein nitrogen in the bovine rumen. VIII. The nutritive value of the proteins of preparations of dried rumen bacteria, rumen protozoa and brewer's yeast for rats. Biochem J (1954) 1.20
Bacteriophage-encoded type III effectors in Salmonella enterica subspecies 1 serovar Typhimurium. Infect Genet Evol (2005) 1.20
Coordinate regulation of Salmonella pathogenicity island 1 (SPI1) and SPI4 in Salmonella enterica serovar Typhimurium. Infect Immun (2007) 1.19
SseK1 and SseK2 are novel translocated proteins of Salmonella enterica serovar typhimurium. Infect Immun (2004) 1.16
Characterization of self-transmissible plasmids determining lactose fermentation and multiple antibiotic resistance in clinical strains of Klebsiella pneumoniae. Plasmid (1987) 1.11
Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself. J Bacteriol (2005) 1.11
Regulation of expression and secretion of NleH, a new non-locus of enterocyte effacement-encoded effector in Citrobacter rodentium. J Bacteriol (2008) 1.10
Do Salmonella carry spare tyres? Trends Microbiol (2008) 1.07
Persistent endemicity of Salmonella bongori 48:z(35):--in Southern Italy: molecular characterization of human, animal, and environmental isolates. J Clin Microbiol (2002) 1.05
Functional transfer of Salmonella pathogenicity island 2 to Salmonella bongori and Escherichia coli. Infect Immun (2004) 0.99
Degradation of purines: only ureidoglycollate lyase out of four allantoin-degrading enzymes is present in mammals. Biochem J (1995) 0.98
Identification of putative ancestors of the multidrug-resistant Salmonella enterica serovar typhimurium DT104 clone harboring the Salmonella genomic island 1. Arch Microbiol (2006) 0.96
Ureidoglycollate lyase, a new metalloenzyme of peroxisomal urate degradation in marine fish liver. Biochem J (1986) 0.95
Binding to Na(+) /H(+) exchanger regulatory factor 2 (NHERF2) affects trafficking and function of the enteropathogenic Escherichia coli type III secretion system effectors Map, EspI and NleH. Cell Microbiol (2010) 0.94
Anaerobic growth of Salmonella typhimurium on L(+)- and D(-)-tartrate involves an oxaloacetate decarboxylase Na+ pump. Arch Microbiol (1994) 0.93
Multiple typing of strains of Salmonella enterica subsp. bongori ser. 48:Z35:- isolated in southern Italy. Ann Inst Pasteur Microbiol (1989) 0.90
lac repressor is an antivirulence factor of Salmonella enterica: its role in the evolution of virulence in Salmonella. PLoS One (2009) 0.90
Identification and characterization of NleI, a new non-LEE-encoded effector of enteropathogenic Escherichia coli (EPEC). Microbes Infect (2006) 0.89
Genomic diversity of citrate fermentation in Klebsiella pneumoniae. BMC Microbiol (2009) 0.87
Cobalamin synthesis in Yersinia enterocolitica 8081. Functional aspects of a putative metabolic island. Adv Exp Med Biol (2003) 0.86
The first 45 amino acids of SopA are necessary for InvB binding and SPI-1 secretion. J Bacteriol (2006) 0.82
[On the history of salmonella research]. Zentralbl Bakteriol Orig (1966) 0.77
Determination of the gene content of Salmonella genomes by microarray analysis. Methods Mol Biol (2007) 0.76
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
Enterotypes of the human gut microbiome. Nature (2011) 24.36
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet (2008) 19.97
ACT: the Artemis Comparison Tool. Bioinformatics (2005) 17.91
Requirement of bic/microRNA-155 for normal immune function. Science (2007) 16.24
Evolution of MRSA during hospital transmission and intercontinental spread. Science (2010) 13.34
Typhoid fever. N Engl J Med (2002) 12.96
Prepublication data sharing. Nature (2009) 12.24
The genome of the African trypanosome Trypanosoma brucei. Science (2005) 11.48
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics (2012) 9.97
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics (2008) 9.17
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet (2003) 9.13
Rapid pneumococcal evolution in response to clinical interventions. Science (2011) 9.09
Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc Natl Acad Sci U S A (2004) 8.95
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet (2006) 8.02
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res (2006) 7.93
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLoS Biol (2007) 7.58
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A (2004) 7.30
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics (2011) 7.27
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study. Lancet Infect Dis (2012) 7.18
The complete genome sequence of Mycobacterium bovis. Proc Natl Acad Sci U S A (2003) 6.79
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. Lancet Infect Dis (2012) 6.64
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet (2006) 6.43
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med (2012) 6.36
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res (2004) 6.30
Gut inflammation provides a respiratory electron acceptor for Salmonella. Nature (2010) 6.25
Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study. Lancet Infect Dis (2011) 6.08
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol (2008) 6.02
CD4+CD25+ T(R) cells suppress innate immune pathology through cytokine-dependent mechanisms. J Exp Med (2003) 6.00
The genome of the blood fluke Schistosoma mansoni. Nature (2009) 5.94
Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. J Bacteriol (2007) 5.88
Evidence for several waves of global transmission in the seventh cholera pandemic. Nature (2011) 5.62
DNAPlotter: circular and linear interactive genome visualization. Bioinformatics (2008) 5.49
Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J (2010) 5.43
Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nat Genet (2013) 5.22
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Phase and antigenic variation in bacteria. Clin Microbiol Rev (2004) 5.02
Evolutionary history of Salmonella typhi. Science (2006) 5.00
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol (2002) 4.96
Microbiology in the post-genomic era. Nat Rev Microbiol (2008) 4.88
Citrobacter rodentium of mice and man. Cell Microbiol (2005) 4.76
Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet (2013) 4.75
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PLoS Pathog (2012) 4.69
Simian immunodeficiency virus-induced mucosal interleukin-17 deficiency promotes Salmonella dissemination from the gut. Nat Med (2008) 4.68
IFITM3 restricts the morbidity and mortality associated with influenza. Nature (2012) 4.66
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol (2014) 4.39
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature (2012) 4.37
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet (2010) 4.35
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinformatics (2011) 4.31
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinformatics (2006) 4.27
Easyfig: a genome comparison visualizer. Bioinformatics (2011) 4.23
Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg Infect Dis (2002) 4.22
Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine. Cell Host Microbe (2009) 4.20
Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J Clin Microbiol (2003) 4.19
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics (2010) 4.18
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res (2009) 4.12
Emergence and global spread of epidemic healthcare-associated Clostridium difficile. Nat Genet (2012) 4.10
Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa. Lancet (2012) 4.02
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res (2009) 3.99
An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination. Proc Natl Acad Sci U S A (2006) 3.89
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet (2013) 3.89
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. Genome Biol (2008) 3.85
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog (2012) 3.81
Genome plasticity of BCG and impact on vaccine efficacy. Proc Natl Acad Sci U S A (2007) 3.73
Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. Genome Biol (2009) 3.66
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol (2009) 3.63